Wall clock time and date at job start Mon Mar 30 2020 04:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.50567 * 2 1 4 4 C 1.53051 * 109.49099 * 239.94949 * 2 1 3 5 5 N 1.46950 * 109.36493 * 181.62919 * 4 2 1 6 6 C 1.46904 * 111.00083 * 183.18686 * 5 4 2 7 7 C 1.46958 * 110.88177 * 59.32141 * 5 4 2 8 8 C 1.53051 * 109.36287 * 300.67981 * 7 5 4 9 9 N 1.46953 * 109.36856 * 58.39599 * 8 7 5 10 10 C 1.46895 * 111.00455 * 176.80840 * 9 8 7 11 11 C 1.53009 * 109.46510 * 63.72175 * 10 9 8 12 12 O 1.42901 * 109.47265 * 68.40470 * 11 10 9 13 13 C 1.42896 * 114.00142 * 180.02562 * 12 11 10 14 14 C 1.50696 * 109.46941 * 179.97438 * 13 12 11 15 15 H 1.07993 * 120.00281 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99489 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00244 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99669 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46960 * 90.00001 * 18 16 14 20 20 H 1.48500 * 109.47302 * 209.99860 * 18 16 14 21 21 H 1.48498 * 109.47196 * 330.00333 * 18 16 14 22 22 H 1.08998 * 109.46962 * 299.94240 * 1 2 3 23 23 H 1.09003 * 109.47340 * 59.94009 * 1 2 3 24 24 H 1.08998 * 109.47094 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.49100 * 61.66216 * 4 2 1 26 26 H 1.09003 * 109.48554 * 301.59949 * 4 2 1 27 27 H 1.09003 * 109.46683 * 292.24803 * 6 5 4 28 28 H 1.09002 * 109.47079 * 52.24686 * 6 5 4 29 29 H 1.08993 * 109.47089 * 172.24797 * 6 5 4 30 30 H 1.09000 * 109.49280 * 180.71013 * 7 5 4 31 31 H 1.09001 * 109.48730 * 60.64215 * 7 5 4 32 32 H 1.09003 * 109.48554 * 298.42996 * 8 7 5 33 33 H 1.09001 * 109.49100 * 178.36729 * 8 7 5 34 34 H 1.08998 * 109.47593 * 303.72759 * 10 9 8 35 35 H 1.09000 * 109.47301 * 183.71708 * 10 9 8 36 36 H 1.08993 * 109.46950 * 308.40172 * 11 10 9 37 37 H 1.09000 * 109.46822 * 188.40205 * 11 10 9 38 38 H 1.09002 * 109.47372 * 59.99415 * 13 12 11 39 39 H 1.09007 * 109.47045 * 299.99700 * 13 12 11 40 40 H 0.97008 * 120.00036 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0407 -0.7225 -1.2489 5 7 3.5096 -0.7551 -1.2265 6 6 4.0411 -1.3749 -2.4477 7 6 4.0000 -1.4490 -0.0274 8 6 3.4893 -0.7265 1.2214 9 7 2.0203 -0.6938 1.1991 10 6 1.4888 -0.0740 2.4203 11 6 1.9341 1.3884 2.4852 12 8 1.2821 2.1312 1.4531 13 6 1.6308 3.5166 1.4251 14 6 0.8899 4.1985 0.3039 15 1 0.2194 3.6308 -0.3241 16 6 1.0672 5.5475 0.0807 17 7 1.8826 6.2392 0.8464 18 14 0.1494 6.3927 -1.3096 19 1 -1.1526 6.9000 -0.8066 20 1 0.9594 7.5281 -1.8194 21 1 -0.0886 5.4219 -2.4078 22 1 -0.3633 0.5129 0.8905 23 1 -0.3634 0.5148 -0.8895 24 1 -0.3633 -1.0276 -0.0005 25 1 1.7022 -0.1928 -2.1394 26 1 1.6544 -1.7417 -1.2628 27 1 3.7846 -2.4343 -2.4586 28 1 3.6079 -0.8872 -3.3209 29 1 5.1251 -1.2633 -2.4696 30 1 5.0900 -1.4490 -0.0274 31 1 3.6360 -2.4764 -0.0275 32 1 3.8756 0.2927 1.2353 33 1 3.8278 -1.2561 2.1120 34 1 1.8662 -0.6077 3.2925 35 1 0.4000 -0.1221 2.4078 36 1 3.0137 1.4459 2.3476 37 1 1.6688 1.8061 3.4564 38 1 2.7043 3.6180 1.2653 39 1 1.3596 3.9788 2.3743 40 1 2.0070 7.1884 0.6895 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338993700.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:25 Heat of formation + Delta-G solvation = -55.925255 kcal Electronic energy + Delta-G solvation = -18864.247495 eV Core-core repulsion = 16099.289658 eV Total energy + Delta-G solvation = -2764.957838 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.78594 -38.50696 -36.43278 -34.83661 -33.39582 -31.33445 -29.35233 -27.89893 -27.61889 -24.91282 -24.54433 -23.29020 -22.35532 -20.26262 -18.57897 -17.56800 -17.46078 -16.63700 -16.40475 -16.10251 -16.04512 -15.55661 -15.42629 -14.96566 -14.39134 -13.93874 -13.56466 -13.33033 -13.24660 -13.18863 -12.90871 -12.78183 -12.75288 -12.59786 -12.42063 -12.20958 -12.03803 -11.85930 -11.65918 -11.37390 -11.25402 -10.80832 -10.14896 -9.30773 -9.07066 -8.32102 -6.43660 1.38248 1.40998 1.52851 2.33438 2.93303 3.02101 3.03649 3.27985 3.90284 4.09309 4.10115 4.25072 4.26086 4.38165 4.46463 4.54497 4.57269 4.62030 4.65569 4.75569 4.81667 4.83798 4.85205 4.89326 4.97084 4.99876 5.08827 5.16116 5.19926 5.44647 5.53238 5.55198 5.96607 6.04172 6.06417 6.24602 6.28303 6.53505 6.81703 7.27935 8.80437 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.023634 B = 0.006825 C = 0.006125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.430485 B = 4101.660772 C = 4570.385311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.075 3.925 3 H 0.050 0.950 4 C 0.071 3.929 5 N -0.571 5.571 6 C 0.029 3.971 7 C 0.065 3.935 8 C 0.048 3.952 9 N -0.526 5.526 10 C 0.063 3.937 11 C 0.016 3.984 12 O -0.383 6.383 13 C 0.211 3.789 14 C -0.537 4.537 15 H 0.064 0.936 16 C 0.005 3.995 17 N -0.933 5.933 18 Si 0.979 3.021 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.263 1.263 22 H 0.053 0.947 23 H 0.048 0.952 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.043 0.957 27 H 0.035 0.965 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.047 0.953 32 H 0.018 0.982 33 H 0.100 0.900 34 H 0.112 0.888 35 H 0.086 0.914 36 H 0.032 0.968 37 H 0.043 0.957 38 H -0.026 1.026 39 H -0.020 1.020 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.159 -16.565 -1.635 16.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.033 4.033 3 H 0.067 0.933 4 C -0.058 4.058 5 N -0.296 5.296 6 C -0.118 4.118 7 C -0.063 4.063 8 C -0.080 4.080 9 N -0.250 5.250 10 C -0.065 4.065 11 C -0.062 4.062 12 O -0.302 6.302 13 C 0.136 3.864 14 C -0.575 4.575 15 H 0.082 0.918 16 C -0.193 4.193 17 N -0.573 5.573 18 Si 0.802 3.198 19 H -0.192 1.192 20 H -0.202 1.202 21 H -0.188 1.188 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.036 0.964 33 H 0.119 0.881 34 H 0.131 0.869 35 H 0.104 0.896 36 H 0.050 0.950 37 H 0.061 0.939 38 H -0.008 1.008 39 H -0.002 1.002 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.111 -16.498 -1.750 16.724 hybrid contribution 0.071 1.177 -0.143 1.188 sum 2.182 -15.321 -1.893 15.591 Atomic orbital electron populations 1.21617 0.93849 1.01031 1.01741 1.21800 0.95796 0.96597 0.89146 0.93253 1.22137 0.87060 0.98974 0.97589 1.62078 1.08936 1.54879 1.03734 1.22351 1.01032 0.97030 0.91435 1.22138 1.00107 0.95483 0.88607 1.22274 0.87784 0.98888 0.99029 1.62503 1.08219 1.52117 1.02112 1.22385 1.01751 0.88720 0.93654 1.23316 0.96281 0.95197 0.91437 1.87967 1.68590 1.21330 1.52333 1.19725 0.93199 0.78179 0.95308 1.21326 1.26645 0.94175 1.15310 0.91823 1.25949 0.96189 0.97599 0.99581 1.70081 1.37757 1.08801 1.40654 0.85238 0.78336 0.77834 0.78381 1.19222 1.20161 1.18756 0.92776 0.93325 0.91726 0.91229 0.93855 0.94678 0.91507 0.90553 0.89200 0.93487 0.96351 0.88145 0.86949 0.89566 0.94964 0.93896 1.00847 1.00230 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.06 8.43 71.98 0.61 -3.45 16 2 C 0.07 2.58 1.92 44.92 0.09 2.67 16 3 H 0.05 2.22 5.53 -2.38 -0.01 2.21 16 4 C 0.07 2.12 4.90 86.31 0.42 2.54 16 5 N -0.57 -16.36 4.97 -921.93 -4.58 -20.94 16 6 C 0.03 0.64 9.63 127.69 1.23 1.87 16 7 C 0.06 1.59 5.62 86.31 0.48 2.07 16 8 C 0.05 1.33 5.24 86.31 0.45 1.78 16 9 N -0.53 -15.67 4.73 -870.49 -4.12 -19.79 16 10 C 0.06 1.83 5.54 86.31 0.48 2.31 16 11 C 0.02 0.61 5.73 71.99 0.41 1.02 16 12 O -0.38 -18.21 5.81 -148.98 -0.87 -19.08 16 13 C 0.21 12.03 5.69 71.23 0.41 12.43 16 14 C -0.54 -32.10 9.43 25.60 0.24 -31.86 16 15 H 0.06 3.74 7.81 -2.91 -0.02 3.72 16 16 C 0.00 0.29 5.46 84.66 0.46 0.75 16 17 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 18 Si 0.98 44.99 29.54 68.60 2.03 47.02 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 20 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 21 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 22 H 0.05 1.92 5.45 -2.39 -0.01 1.91 16 23 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.07 2.12 8.09 -2.39 -0.02 2.10 16 26 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 1.44 8.07 -2.39 -0.02 1.42 16 29 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.02 0.62 6.39 -2.39 -0.02 0.60 16 33 H 0.10 2.18 8.13 -2.39 -0.02 2.16 16 34 H 0.11 2.52 8.13 -2.39 -0.02 2.50 16 35 H 0.09 2.53 6.24 -2.39 -0.01 2.52 16 36 H 0.03 1.25 6.18 -2.39 -0.01 1.24 16 37 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 38 H -0.03 -1.61 8.14 -2.39 -0.02 -1.63 16 39 H -0.02 -1.20 8.14 -2.38 -0.02 -1.22 16 40 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 Total: -1.00 -66.90 306.99 -0.99 -67.88 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 0.98 Total: 9.69 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: 5.28 Total: -7.87 kcal Atomic # 7 Polarization: -89.24 SS G_CDS: -8.41 Total: -97.65 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.87 Total: -19.08 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -66.90 -0.99 -67.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338993700.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.959 kcal (2) G-P(sol) polarization free energy of solvation -66.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds