Wall clock time and date at job start Mon Mar 30 2020 04:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.48715 * 2 1 4 4 C 1.53056 * 109.48562 * 120.03824 * 2 1 3 5 5 N 1.46950 * 109.36601 * 178.37209 * 4 2 1 6 6 C 1.46896 * 111.00271 * 176.81190 * 5 4 2 7 7 C 1.46959 * 110.87729 * 300.68115 * 5 4 2 8 8 C 1.53048 * 109.36794 * 59.32141 * 7 5 4 9 9 N 1.46955 * 109.49153 * 239.95013 * 2 1 3 10 10 C 1.46896 * 110.99789 * 56.84933 * 9 2 1 11 11 C 1.53005 * 109.46982 * 176.00482 * 10 9 2 12 12 O 1.42892 * 109.47268 * 62.59547 * 11 10 9 13 13 C 1.42900 * 114.00085 * 180.02562 * 12 11 10 14 14 C 1.50694 * 109.47368 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00233 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00329 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99773 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00385 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47131 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47167 * 119.99942 * 18 16 14 21 21 H 1.48500 * 109.47217 * 240.00073 * 18 16 14 22 22 H 1.08994 * 109.47738 * 300.00593 * 1 2 3 23 23 H 1.08999 * 109.46988 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.47011 * 60.01032 * 1 2 3 25 25 H 1.08999 * 109.48781 * 298.34136 * 4 2 1 26 26 H 1.08997 * 109.48795 * 58.40195 * 4 2 1 27 27 H 1.09003 * 109.46963 * 59.99769 * 6 5 4 28 28 H 1.09002 * 109.47576 * 179.97438 * 6 5 4 29 29 H 1.09001 * 109.46935 * 299.99648 * 6 5 4 30 30 H 1.09002 * 109.48718 * 179.28873 * 7 5 4 31 31 H 1.09000 * 109.48694 * 299.32694 * 7 5 4 32 32 H 1.08997 * 109.48915 * 61.56594 * 8 7 5 33 33 H 1.08994 * 109.48649 * 181.61180 * 8 7 5 34 34 H 1.09007 * 109.46973 * 295.99729 * 10 9 2 35 35 H 1.09000 * 109.47510 * 56.00070 * 10 9 2 36 36 H 1.08999 * 109.47349 * 182.60297 * 11 10 9 37 37 H 1.09004 * 109.46798 * 302.59692 * 11 10 9 38 38 H 1.09003 * 109.47115 * 299.99989 * 13 12 11 39 39 H 1.08992 * 109.47142 * 60.00208 * 13 12 11 40 40 H 0.97005 * 120.00211 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7223 1.2491 5 7 3.5095 -0.7549 1.2269 6 6 4.0409 -1.3745 2.4482 7 6 3.9999 -1.4491 0.0280 8 6 3.4894 -0.7268 -1.2211 9 7 2.0203 -0.6937 -1.1991 10 6 1.4890 -0.0736 -2.4202 11 6 2.0980 -0.7575 -3.6460 12 8 1.7124 -2.1333 -3.6645 13 6 2.2317 -2.8675 -4.7751 14 6 1.7642 -4.2979 -4.6944 15 1 1.1339 -4.6147 -3.8767 16 6 2.1419 -5.2024 -5.6641 17 7 2.9098 -4.8167 -6.6597 18 14 1.5630 -6.9755 -5.5638 19 1 0.7156 -7.1521 -4.3571 20 1 0.7723 -7.3075 -6.7762 21 1 2.7403 -7.8766 -5.4786 22 1 -0.3634 0.5139 0.8898 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 -0.8901 25 1 1.7020 -0.1924 2.1394 26 1 1.6543 -1.7414 1.2632 27 1 3.6697 -2.3962 2.5284 28 1 5.1300 -1.3862 2.4055 29 1 3.7172 -0.8011 3.3169 30 1 5.0899 -1.4491 0.0281 31 1 3.6362 -2.4766 0.0284 32 1 3.8757 0.2923 -1.2352 33 1 3.8282 -1.2565 -2.1114 34 1 0.4050 -0.1860 -2.4426 35 1 1.7448 0.9859 -2.4307 36 1 1.7394 -0.2674 -4.5511 37 1 3.1846 -0.6853 -3.5999 38 1 1.8762 -2.4213 -5.7039 39 1 3.3210 -2.8392 -4.7520 40 1 3.1753 -5.4529 -7.3421 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338993701.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:28 Heat of formation + Delta-G solvation = -58.771644 kcal Electronic energy + Delta-G solvation = -18268.606725 eV Core-core repulsion = 15503.525459 eV Total energy + Delta-G solvation = -2765.081266 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.63565 -38.54680 -36.57115 -34.90289 -33.53112 -31.36440 -29.36175 -28.01375 -27.74656 -25.13036 -24.47877 -22.87612 -22.35060 -20.56947 -18.62357 -17.54796 -17.40634 -16.65380 -16.26111 -16.20507 -16.14281 -15.57559 -15.50626 -14.84094 -14.76876 -14.04929 -13.74899 -13.49652 -13.32906 -13.02250 -12.96180 -12.81494 -12.70354 -12.65049 -12.39973 -12.34207 -12.06659 -11.98983 -11.45335 -11.42674 -11.22368 -10.84809 -10.17475 -9.41660 -9.14224 -8.32195 -6.43847 1.38818 1.40232 1.55121 2.34615 2.85571 2.95721 3.01485 3.24589 3.81952 3.98286 3.99874 4.21685 4.23120 4.31416 4.35892 4.45552 4.51093 4.58955 4.62812 4.64169 4.74421 4.76822 4.83406 4.87418 4.92278 4.98702 5.00344 5.06029 5.12260 5.19472 5.37704 5.55584 5.94747 5.96512 5.98923 6.20279 6.26490 6.56897 6.86214 7.28441 8.80434 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.026016 B = 0.005316 C = 0.004976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.013930 B = 5265.920081 C = 5625.391275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.083 3.917 3 H 0.050 0.950 4 C 0.064 3.936 5 N -0.551 5.551 6 C 0.025 3.975 7 C 0.061 3.939 8 C 0.059 3.941 9 N -0.546 5.546 10 C 0.070 3.930 11 C 0.052 3.948 12 O -0.393 6.393 13 C 0.210 3.790 14 C -0.544 4.544 15 H 0.058 0.942 16 C 0.007 3.993 17 N -0.931 5.931 18 Si 0.982 3.018 19 H -0.266 1.266 20 H -0.270 1.270 21 H -0.271 1.271 22 H 0.083 0.917 23 H 0.048 0.952 24 H 0.061 0.939 25 H 0.100 0.900 26 H 0.026 0.974 27 H 0.020 0.980 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.022 0.978 32 H 0.045 0.955 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.041 0.959 38 H -0.016 1.016 39 H -0.018 1.018 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.379 10.778 15.902 19.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.025 4.025 3 H 0.068 0.932 4 C -0.064 4.064 5 N -0.275 5.275 6 C -0.123 4.123 7 C -0.067 4.067 8 C -0.069 4.069 9 N -0.272 5.272 10 C -0.058 4.058 11 C -0.025 4.025 12 O -0.312 6.312 13 C 0.134 3.866 14 C -0.581 4.581 15 H 0.076 0.924 16 C -0.191 4.191 17 N -0.570 5.570 18 Si 0.804 3.196 19 H -0.191 1.191 20 H -0.195 1.195 21 H -0.196 1.196 22 H 0.102 0.898 23 H 0.067 0.933 24 H 0.080 0.920 25 H 0.118 0.882 26 H 0.044 0.956 27 H 0.039 0.961 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.040 0.960 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.001 0.999 39 H 0.000 1.000 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.406 10.641 15.898 19.135 hybrid contribution 0.210 -0.810 -0.761 1.131 sum -0.196 9.830 15.137 18.050 Atomic orbital electron populations 1.21831 0.92979 1.02195 1.02912 1.21744 0.96104 0.95554 0.89103 0.93188 1.22238 0.87002 0.99132 0.98072 1.62244 1.08909 1.53549 1.02820 1.22410 1.00977 0.97042 0.91840 1.22098 1.00091 0.95046 0.89458 1.22110 0.87742 0.99286 0.97791 1.62055 1.08313 1.54645 1.02190 1.22094 1.00690 0.95398 0.87575 1.22680 0.98242 0.83785 0.97824 1.87922 1.74325 1.20832 1.48165 1.19783 0.91850 0.91103 0.83826 1.21382 1.32120 0.94488 1.10126 0.92406 1.25933 0.94737 1.04302 0.94140 1.70077 1.36475 1.37229 1.13262 0.85161 0.78415 0.77425 0.78552 1.19059 1.19494 1.19600 0.89830 0.93255 0.92015 0.88211 0.95598 0.96124 0.90554 0.89713 0.89164 0.96013 0.93688 0.91798 0.89726 0.91640 0.93451 0.94129 0.99867 1.00005 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.86 71.98 0.64 -2.38 16 2 C 0.08 2.05 2.56 44.92 0.11 2.16 16 3 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 4 C 0.06 1.49 4.90 86.31 0.42 1.91 16 5 N -0.55 -13.20 4.97 -921.95 -4.58 -17.78 16 6 C 0.03 0.47 9.60 127.69 1.23 1.70 16 7 C 0.06 1.71 5.62 86.31 0.49 2.20 16 8 C 0.06 1.80 5.12 86.31 0.44 2.24 16 9 N -0.55 -17.13 4.54 -870.47 -3.96 -21.09 16 10 C 0.07 2.14 4.92 86.31 0.42 2.56 16 11 C 0.05 1.99 5.57 71.98 0.40 2.39 16 12 O -0.39 -19.93 10.24 -148.98 -1.52 -21.46 16 13 C 0.21 12.14 5.69 71.23 0.41 12.54 16 14 C -0.54 -33.34 9.43 25.60 0.24 -33.10 16 15 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 16 C 0.01 0.42 5.46 84.65 0.46 0.88 16 17 N -0.93 -56.85 13.29 21.45 0.28 -56.56 16 18 Si 0.98 45.36 29.54 68.60 2.03 47.39 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.06 1.29 6.45 -2.38 -0.02 1.27 16 25 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.02 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.08 1.28 8.13 -2.39 -0.02 1.26 16 29 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.09 2.21 8.13 -2.39 -0.02 2.19 16 31 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.06 2.28 5.95 -2.39 -0.01 2.26 16 34 H 0.08 2.58 6.49 -2.38 -0.02 2.57 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.04 1.53 6.09 -2.38 -0.01 1.52 16 38 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 39 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 40 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 Total: -1.00 -68.61 314.84 -1.51 -70.12 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: 0.98 Total: 6.27 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: 5.26 Total: -6.89 kcal Atomic # 7 Polarization: -87.17 SS G_CDS: -8.25 Total: -95.43 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -1.52 Total: -21.46 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -68.61 -1.51 -70.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338993701.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.347 kcal (2) G-P(sol) polarization free energy of solvation -68.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds