Wall clock time and date at job start Mon Mar 30 2020 04:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.50391 * 2 1 4 4 N 1.46961 * 109.48739 * 120.05128 * 2 1 3 5 5 C 1.46953 * 110.87994 * 179.28444 * 4 2 1 6 6 C 1.53047 * 109.36854 * 300.68573 * 5 4 2 7 7 N 1.46961 * 109.36765 * 58.39724 * 6 5 4 8 8 C 1.46894 * 111.00015 * 176.81427 * 7 6 5 9 9 C 1.53001 * 109.47330 * 48.45423 * 8 7 6 10 10 O 1.42907 * 109.46880 * 66.37747 * 9 8 7 11 11 C 1.42904 * 113.99689 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.46907 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00477 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00225 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99673 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00252 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46780 * 60.00586 * 16 14 12 18 18 H 1.48500 * 109.46871 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.47390 * 300.00305 * 16 14 12 20 20 C 1.46953 * 110.87662 * 300.68408 * 7 6 5 21 21 H 1.09001 * 109.49500 * 299.34657 * 20 7 6 22 22 C 1.52998 * 109.48746 * 179.28634 * 20 7 6 23 23 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47063 * 300.05912 * 1 2 3 25 25 H 1.09000 * 109.46754 * 60.05774 * 1 2 3 26 26 H 1.00895 * 111.00226 * 303.15585 * 4 2 1 27 27 H 1.08998 * 109.48729 * 180.71163 * 5 4 2 28 28 H 1.09004 * 109.50267 * 60.66028 * 5 4 2 29 29 H 1.09005 * 109.48593 * 298.43305 * 6 5 4 30 30 H 1.08995 * 109.49190 * 178.36587 * 6 5 4 31 31 H 1.08998 * 109.47010 * 168.45147 * 8 7 6 32 32 H 1.08995 * 109.47510 * 288.45324 * 8 7 6 33 33 H 1.08999 * 109.47681 * 186.37475 * 9 8 7 34 34 H 1.09005 * 109.47290 * 306.38198 * 9 8 7 35 35 H 1.08994 * 109.47305 * 300.00132 * 11 10 9 36 36 H 1.09002 * 109.46995 * 60.00181 * 11 10 9 37 37 H 0.97003 * 119.99745 * 179.97438 * 15 14 12 38 38 H 1.09006 * 109.47051 * 59.99751 * 22 20 7 39 39 H 1.09005 * 109.47663 * 179.97438 * 22 20 7 40 40 H 1.08998 * 109.47286 * 299.99807 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 7 2.0203 -0.6938 1.1992 5 6 3.4893 -0.7265 1.2215 6 6 3.9999 -1.4491 -0.0273 7 7 3.5097 -0.7553 -1.2264 8 6 4.0411 -1.3752 -2.4475 9 6 3.8484 -2.8913 -2.3753 10 8 2.4525 -3.1960 -2.4068 11 6 2.1612 -4.5937 -2.3447 12 6 0.6686 -4.7978 -2.3840 13 1 0.0085 -3.9456 -2.4503 14 6 0.1457 -6.0727 -2.3364 15 7 0.9495 -7.1105 -2.2562 16 14 -1.7044 -6.3259 -2.3859 17 1 -2.2475 -5.7623 -3.6479 18 1 -2.0072 -7.7782 -2.3212 19 1 -2.3293 -5.6384 -1.2275 20 6 2.0407 -0.7226 -1.2487 21 1 1.6544 -1.7418 -1.2627 22 6 1.5656 0.0208 -2.4987 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5147 0.8894 25 1 -0.3633 0.5129 -0.8905 26 1 1.6553 -0.2680 2.0379 27 1 3.8277 -1.2561 2.1121 28 1 3.8758 0.2926 1.2356 29 1 3.6359 -2.4765 -0.0272 30 1 5.0899 -1.4491 -0.0273 31 1 3.5106 -0.9825 -3.3149 32 1 5.1033 -1.1480 -2.5377 33 1 4.3421 -3.3614 -3.2258 34 1 4.2818 -3.2690 -1.4492 35 1 2.6199 -5.0986 -3.1947 36 1 2.5598 -5.0070 -1.4182 37 1 0.5816 -8.0075 -2.2224 38 1 1.9311 -0.4930 -3.3879 39 1 0.4759 0.0445 -2.5153 40 1 1.9513 1.0401 -2.4839 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379466263.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:44 Heat of formation + Delta-G solvation = -39.910428 kcal Electronic energy + Delta-G solvation = -18971.316279 eV Core-core repulsion = 16207.052896 eV Total energy + Delta-G solvation = -2764.263383 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.48983 -36.71651 -34.52353 -33.07143 -32.61811 -29.35045 -27.96786 -27.05654 -26.21526 -23.62203 -22.32325 -21.72951 -20.75065 -18.89917 -16.37779 -16.16274 -15.89601 -15.41779 -15.03378 -14.83741 -14.33207 -14.11562 -13.72504 -13.26058 -12.91649 -12.36783 -12.35080 -12.11557 -11.85770 -11.56069 -11.36566 -11.30436 -11.12246 -10.84599 -10.80609 -10.66602 -10.49586 -10.30040 -10.09655 -9.99473 -9.10370 -8.78773 -8.27243 -8.16705 -7.73432 -6.09170 -4.10660 3.32983 3.35624 3.39333 4.21512 4.33224 4.37218 4.88605 5.07982 5.23532 5.27436 5.37735 5.52346 5.56236 5.59024 5.67560 5.71049 5.85855 5.88307 5.91786 6.00710 6.06518 6.10492 6.13992 6.25394 6.30558 6.39820 6.49487 6.65211 6.91961 7.12688 7.19326 7.36505 7.44269 7.53259 7.61899 7.80053 8.16652 8.57486 9.01575 9.53906 11.02388 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.022676 B = 0.007314 C = 0.006543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.481677 B = 3827.244335 C = 4278.466627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.094 3.906 3 H 0.035 0.965 4 N -0.684 5.684 5 C 0.065 3.935 6 C 0.049 3.951 7 N -0.532 5.532 8 C 0.051 3.949 9 C 0.023 3.977 10 O -0.387 6.387 11 C 0.196 3.804 12 C -0.511 4.511 13 H 0.065 0.935 14 C 0.057 3.943 15 N -0.899 5.899 16 Si 0.906 3.094 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.074 3.926 21 H 0.097 0.903 22 C -0.141 4.141 23 H 0.069 0.931 24 H 0.048 0.952 25 H 0.062 0.938 26 H 0.336 0.664 27 H 0.074 0.926 28 H 0.031 0.969 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.037 0.963 34 H 0.041 0.959 35 H 0.002 0.998 36 H 0.002 0.998 37 H 0.264 0.736 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.368 13.834 4.088 15.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.016 4.016 3 H 0.053 0.947 4 N -0.316 5.316 5 C -0.065 4.065 6 C -0.080 4.080 7 N -0.256 5.256 8 C -0.077 4.077 9 C -0.056 4.056 10 O -0.307 6.307 11 C 0.122 3.878 12 C -0.549 4.549 13 H 0.083 0.917 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.733 3.267 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.034 4.034 21 H 0.115 0.885 22 C -0.199 4.199 23 H 0.089 0.911 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.154 0.846 27 H 0.092 0.908 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.020 0.980 36 H 0.020 0.980 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.333 13.635 3.826 14.809 hybrid contribution -0.647 -0.514 0.229 0.857 sum 3.686 13.121 4.055 14.219 Atomic orbital electron populations 1.21866 0.94343 1.03211 1.01096 1.21530 0.94885 0.94815 0.90348 0.94747 1.60462 1.08130 1.58477 1.04531 1.21914 0.87968 0.98687 0.97901 1.22189 0.98759 0.97508 0.89520 1.62446 1.09376 1.52030 1.01720 1.22368 0.99969 0.91467 0.93944 1.23043 0.86536 0.96549 0.99464 1.87873 1.19655 1.28392 1.94738 1.20163 0.96641 0.75936 0.95076 1.20975 0.90843 0.92551 1.50518 0.91690 1.24938 0.98772 0.95549 0.95192 1.69957 1.34940 0.98529 1.50418 0.86426 0.84493 0.76930 0.78826 1.20056 1.21194 1.19961 1.21927 0.86783 1.01593 0.93052 0.88492 1.21877 1.00779 0.99451 0.97753 0.91149 0.93266 0.91879 0.84606 0.90809 0.95112 0.92606 0.91162 0.89621 0.90387 0.94497 0.94119 0.98008 0.98013 0.92660 0.91840 0.92202 0.93328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.15 37.16 0.34 -1.66 16 2 C 0.09 1.39 2.70 -67.65 -0.18 1.20 16 3 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 4 N -0.68 -9.93 6.55 -106.59 -0.70 -10.63 16 5 C 0.06 0.88 6.72 -3.77 -0.03 0.85 16 6 C 0.05 0.74 4.76 -3.77 -0.02 0.73 16 7 N -0.53 -8.42 4.73 -226.50 -1.07 -9.49 16 8 C 0.05 0.79 5.85 -3.83 -0.02 0.76 16 9 C 0.02 0.43 5.52 37.16 0.21 0.64 16 10 O -0.39 -9.11 7.49 -35.23 -0.26 -9.37 16 11 C 0.20 5.40 5.69 36.00 0.20 5.61 16 12 C -0.51 -15.02 9.43 -34.44 -0.32 -15.35 16 13 H 0.06 1.89 7.81 -52.49 -0.41 1.48 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 16 Si 0.91 22.04 29.54 -169.99 -5.02 17.02 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 20 C 0.07 1.25 1.65 -67.66 -0.11 1.14 16 21 H 0.10 2.08 5.63 -51.93 -0.29 1.79 16 22 C -0.14 -2.13 8.61 37.16 0.32 -1.81 16 23 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.79 6.48 -51.93 -0.34 0.45 16 26 H 0.34 4.07 8.83 -39.29 -0.35 3.73 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 1.03 6.27 -51.93 -0.33 0.71 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.09 1.34 5.51 -51.93 -0.29 1.05 16 32 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.04 0.77 5.98 -51.93 -0.31 0.46 16 35 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 36 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 38 H 0.06 1.01 6.05 -51.93 -0.31 0.70 16 39 H 0.06 0.86 6.48 -51.93 -0.34 0.53 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 305.38 15.07 4.60 4.60 Total: -1.00 -30.94 305.38 -8.17 -39.11 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -6.74 Total: 1.55 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 0.29 Total: -6.34 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: -1.03 Total: -46.57 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -0.26 Total: -9.37 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.94 -8.17 -39.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379466263.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.799 kcal (2) G-P(sol) polarization free energy of solvation -30.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds