Wall clock time and date at job start Mon Mar 30 2020 04:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.50391 * 2 1 4 4 N 1.46961 * 109.48739 * 120.05128 * 2 1 3 5 5 C 1.46953 * 110.87994 * 179.28444 * 4 2 1 6 6 C 1.53047 * 109.36854 * 300.68573 * 5 4 2 7 7 N 1.46961 * 109.36765 * 58.39724 * 6 5 4 8 8 C 1.46894 * 111.00015 * 176.81427 * 7 6 5 9 9 C 1.53001 * 109.47330 * 48.45423 * 8 7 6 10 10 O 1.42907 * 109.46880 * 66.37747 * 9 8 7 11 11 C 1.42904 * 113.99689 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.46907 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00477 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00225 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99673 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00252 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46780 * 60.00586 * 16 14 12 18 18 H 1.48500 * 109.46871 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.47390 * 300.00305 * 16 14 12 20 20 C 1.46953 * 110.87662 * 300.68408 * 7 6 5 21 21 H 1.09001 * 109.49500 * 299.34657 * 20 7 6 22 22 C 1.52998 * 109.48746 * 179.28634 * 20 7 6 23 23 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47063 * 300.05912 * 1 2 3 25 25 H 1.09000 * 109.46754 * 60.05774 * 1 2 3 26 26 H 1.00895 * 111.00226 * 303.15585 * 4 2 1 27 27 H 1.08998 * 109.48729 * 180.71163 * 5 4 2 28 28 H 1.09004 * 109.50267 * 60.66028 * 5 4 2 29 29 H 1.09005 * 109.48593 * 298.43305 * 6 5 4 30 30 H 1.08995 * 109.49190 * 178.36587 * 6 5 4 31 31 H 1.08998 * 109.47010 * 168.45147 * 8 7 6 32 32 H 1.08995 * 109.47510 * 288.45324 * 8 7 6 33 33 H 1.08999 * 109.47681 * 186.37475 * 9 8 7 34 34 H 1.09005 * 109.47290 * 306.38198 * 9 8 7 35 35 H 1.08994 * 109.47305 * 300.00132 * 11 10 9 36 36 H 1.09002 * 109.46995 * 60.00181 * 11 10 9 37 37 H 0.97003 * 119.99745 * 179.97438 * 15 14 12 38 38 H 1.09006 * 109.47051 * 59.99751 * 22 20 7 39 39 H 1.09005 * 109.47663 * 179.97438 * 22 20 7 40 40 H 1.08998 * 109.47286 * 299.99807 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 7 2.0203 -0.6938 1.1992 5 6 3.4893 -0.7265 1.2215 6 6 3.9999 -1.4491 -0.0273 7 7 3.5097 -0.7553 -1.2264 8 6 4.0411 -1.3752 -2.4475 9 6 3.8484 -2.8913 -2.3753 10 8 2.4525 -3.1960 -2.4068 11 6 2.1612 -4.5937 -2.3447 12 6 0.6686 -4.7978 -2.3840 13 1 0.0085 -3.9456 -2.4503 14 6 0.1457 -6.0727 -2.3364 15 7 0.9495 -7.1105 -2.2562 16 14 -1.7044 -6.3259 -2.3859 17 1 -2.2475 -5.7623 -3.6479 18 1 -2.0072 -7.7782 -2.3212 19 1 -2.3293 -5.6384 -1.2275 20 6 2.0407 -0.7226 -1.2487 21 1 1.6544 -1.7418 -1.2627 22 6 1.5656 0.0208 -2.4987 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5147 0.8894 25 1 -0.3633 0.5129 -0.8905 26 1 1.6553 -0.2680 2.0379 27 1 3.8277 -1.2561 2.1121 28 1 3.8758 0.2926 1.2356 29 1 3.6359 -2.4765 -0.0272 30 1 5.0899 -1.4491 -0.0273 31 1 3.5106 -0.9825 -3.3149 32 1 5.1033 -1.1480 -2.5377 33 1 4.3421 -3.3614 -3.2258 34 1 4.2818 -3.2690 -1.4492 35 1 2.6199 -5.0986 -3.1947 36 1 2.5598 -5.0070 -1.4182 37 1 0.5816 -8.0075 -2.2224 38 1 1.9311 -0.4930 -3.3879 39 1 0.4759 0.0445 -2.5153 40 1 1.9513 1.0401 -2.4839 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379466263.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:43 Heat of formation + Delta-G solvation = -63.484846 kcal Electronic energy + Delta-G solvation = -18972.338542 eV Core-core repulsion = 16207.052896 eV Total energy + Delta-G solvation = -2765.285646 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.77872 -38.42447 -35.94910 -34.79345 -34.24484 -30.85911 -29.33687 -28.85977 -27.55559 -25.05414 -24.44472 -22.92825 -22.04723 -20.21894 -18.59441 -17.55301 -17.43551 -16.89790 -16.59692 -16.22629 -16.00037 -15.60367 -15.26908 -14.62024 -14.45918 -13.97514 -13.56063 -13.48003 -13.27546 -13.03540 -13.00106 -12.77725 -12.66880 -12.54961 -12.44495 -12.15014 -11.97656 -11.78566 -11.54671 -11.30557 -11.25324 -10.82975 -10.20783 -9.39339 -9.10301 -8.33579 -6.45666 1.36932 1.42047 1.50140 2.32300 2.91360 3.00218 3.25119 3.27698 3.86328 4.06477 4.15014 4.22168 4.28787 4.38794 4.41634 4.50276 4.52281 4.65671 4.71585 4.77711 4.80486 4.83746 4.91084 4.95205 4.99433 5.04924 5.13847 5.18066 5.29602 5.45751 5.52506 5.56145 5.94416 6.04217 6.12250 6.25683 6.51058 6.59846 6.79037 7.25836 8.78715 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.022676 B = 0.007314 C = 0.006543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.481677 B = 3827.244335 C = 4278.466627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.098 3.902 3 H 0.049 0.951 4 N -0.705 5.705 5 C 0.068 3.932 6 C 0.047 3.953 7 N -0.523 5.523 8 C 0.057 3.943 9 C 0.015 3.985 10 O -0.390 6.390 11 C 0.214 3.786 12 C -0.540 4.540 13 H 0.061 0.939 14 C 0.006 3.994 15 N -0.932 5.932 16 Si 0.980 3.020 17 H -0.263 1.263 18 H -0.275 1.275 19 H -0.266 1.266 20 C 0.073 3.927 21 H 0.045 0.955 22 C -0.135 4.135 23 H 0.038 0.962 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.351 0.649 27 H 0.087 0.913 28 H 0.047 0.953 29 H 0.015 0.985 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.041 0.959 34 H 0.038 0.962 35 H -0.020 1.020 36 H -0.026 1.026 37 H 0.270 0.730 38 H 0.050 0.950 39 H 0.062 0.938 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.917 15.626 4.457 16.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.012 4.012 3 H 0.067 0.933 4 N -0.338 5.338 5 C -0.061 4.061 6 C -0.081 4.081 7 N -0.246 5.246 8 C -0.071 4.071 9 C -0.063 4.063 10 O -0.310 6.310 11 C 0.138 3.862 12 C -0.577 4.577 13 H 0.079 0.921 14 C -0.193 4.193 15 N -0.572 5.572 16 Si 0.803 3.197 17 H -0.188 1.188 18 H -0.200 1.200 19 H -0.191 1.191 20 C -0.036 4.036 21 H 0.063 0.937 22 C -0.193 4.193 23 H 0.058 0.942 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.170 0.830 27 H 0.106 0.894 28 H 0.065 0.935 29 H 0.033 0.967 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.130 0.870 33 H 0.059 0.941 34 H 0.056 0.944 35 H -0.002 1.002 36 H -0.008 1.008 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.900 15.448 4.203 16.477 hybrid contribution -0.405 -1.062 0.130 1.144 sum 3.495 14.385 4.333 15.425 Atomic orbital electron populations 1.21832 0.93773 1.01636 1.02801 1.21477 0.95347 0.94933 0.89434 0.93342 1.60423 1.08984 1.59208 1.05194 1.21924 0.87423 0.99422 0.97350 1.22261 1.00055 0.95451 0.90363 1.62552 1.08742 1.51392 1.01920 1.22472 1.02047 0.88458 0.94156 1.23377 0.84064 0.99391 0.99488 1.87896 1.22820 1.25577 1.94675 1.19719 0.95927 0.77910 0.92598 1.21277 0.91681 0.93064 1.51727 0.92100 1.25960 1.04424 0.94885 0.93992 1.70074 1.37439 0.99160 1.50486 0.85280 0.77585 0.77438 0.79425 1.18809 1.19967 1.19089 1.21868 0.87295 0.99279 0.95156 0.93677 1.21822 1.01025 1.00124 0.96316 0.94249 0.90936 0.90844 0.82982 0.89428 0.93467 0.96705 0.88923 0.89431 0.86968 0.94057 0.94407 1.00196 1.00811 0.92117 0.93126 0.91914 0.91199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 9.15 71.98 0.66 -3.06 16 2 C 0.10 2.75 2.70 44.92 0.12 2.87 16 3 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 4 N -0.70 -19.63 6.55 -491.13 -3.21 -22.85 16 5 C 0.07 1.72 6.72 86.31 0.58 2.30 16 6 C 0.05 1.40 4.76 86.31 0.41 1.81 16 7 N -0.52 -15.92 4.73 -870.53 -4.12 -20.04 16 8 C 0.06 1.70 5.85 86.30 0.51 2.21 16 9 C 0.02 0.58 5.52 71.98 0.40 0.98 16 10 O -0.39 -19.21 7.49 -148.98 -1.12 -20.33 16 11 C 0.21 12.39 5.69 71.23 0.41 12.80 16 12 C -0.54 -32.82 9.43 25.60 0.24 -32.58 16 13 H 0.06 3.66 7.81 -2.91 -0.02 3.63 16 14 C 0.01 0.34 5.46 84.65 0.46 0.80 16 15 N -0.93 -57.45 13.29 21.45 0.28 -57.16 16 16 Si 0.98 45.32 29.54 68.60 2.03 47.35 16 17 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 20 C 0.07 2.42 1.65 44.92 0.07 2.49 16 21 H 0.05 2.02 5.63 -2.39 -0.01 2.00 16 22 C -0.14 -3.95 8.61 71.98 0.62 -3.33 16 23 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 25 H 0.07 1.73 6.48 -2.39 -0.02 1.71 16 26 H 0.35 7.86 8.83 -89.70 -0.79 7.07 16 27 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.01 0.56 6.27 -2.38 -0.01 0.55 16 30 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.09 2.63 5.51 -2.39 -0.01 2.62 16 32 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.04 1.48 5.98 -2.38 -0.01 1.47 16 35 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 36 H -0.03 -1.60 8.14 -2.39 -0.02 -1.62 16 37 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 38 H 0.05 1.59 6.05 -2.38 -0.01 1.57 16 39 H 0.06 1.76 6.48 -2.38 -0.02 1.75 16 40 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -68.55 305.38 -1.44 -69.99 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.22 Total: 15.75 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: 4.48 Total: -12.72 kcal Atomic # 7 Polarization: -93.00 SS G_CDS: -7.05 Total: -100.05 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -1.12 Total: -20.33 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -68.55 -1.44 -69.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379466263.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.507 kcal (2) G-P(sol) polarization free energy of solvation -68.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds