Wall clock time and date at job start Mon Mar 30 2020 04:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.50314 * 2 1 4 4 N 1.46953 * 109.49301 * 120.05426 * 2 1 3 5 5 C 1.47001 * 110.89383 * 179.29278 * 4 2 1 6 6 C 1.53053 * 109.33854 * 300.68831 * 5 4 2 7 7 N 1.46961 * 109.38065 * 58.39292 * 6 5 4 8 8 C 1.46895 * 111.00175 * 176.79966 * 7 6 5 9 9 C 1.53000 * 109.47368 * 195.61848 * 8 7 6 10 10 O 1.42900 * 109.47231 * 64.31423 * 9 8 7 11 11 C 1.42896 * 114.00128 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.47343 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99975 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00234 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99726 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00086 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46838 * 60.00061 * 16 14 12 18 18 H 1.48492 * 109.47262 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47134 * 300.00261 * 16 14 12 20 20 C 1.46951 * 110.87900 * 300.67122 * 7 6 5 21 21 H 1.08999 * 109.49091 * 179.31059 * 20 7 6 22 22 C 1.53004 * 109.48890 * 299.34731 * 20 7 6 23 23 H 1.09001 * 109.46592 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47050 * 300.04793 * 1 2 3 25 25 H 1.08996 * 109.47152 * 60.06113 * 1 2 3 26 26 H 1.00901 * 111.00076 * 55.42211 * 4 2 1 27 27 H 1.08999 * 109.51860 * 180.72291 * 5 4 2 28 28 H 1.08992 * 109.48733 * 60.64272 * 5 4 2 29 29 H 1.08992 * 109.49172 * 298.41426 * 6 5 4 30 30 H 1.08996 * 109.48949 * 178.36914 * 6 5 4 31 31 H 1.09003 * 109.47148 * 315.61790 * 8 7 6 32 32 H 1.08994 * 109.47286 * 75.61807 * 8 7 6 33 33 H 1.08996 * 109.47385 * 184.31516 * 9 8 7 34 34 H 1.09005 * 109.46987 * 304.31922 * 9 8 7 35 35 H 1.09002 * 109.47051 * 300.00064 * 11 10 9 36 36 H 1.09004 * 109.47220 * 59.99987 * 11 10 9 37 37 H 0.96999 * 119.99862 * 180.02562 * 15 14 12 38 38 H 1.09007 * 109.46564 * 60.00482 * 22 20 7 39 39 H 1.09002 * 109.47415 * 180.02562 * 22 20 7 40 40 H 1.09000 * 109.46882 * 300.00707 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 7 2.0204 -0.6938 1.1990 5 6 3.4898 -0.7265 1.2217 6 6 4.0000 -1.4490 -0.0274 7 7 3.5097 -0.7552 -1.2265 8 6 4.0411 -1.3750 -2.4477 9 6 3.8427 -0.4245 -3.6301 10 8 4.6151 0.7600 -3.4239 11 6 4.4997 1.7196 -4.4764 12 6 5.3504 2.9215 -4.1559 13 1 5.9216 2.9499 -3.2398 14 6 5.3994 3.9849 -5.0321 15 7 4.7034 3.9505 -6.1474 16 14 6.4533 5.4751 -4.6344 17 1 7.8716 5.0563 -4.4987 18 1 6.3345 6.4717 -5.7287 19 1 5.9921 6.0815 -3.3596 20 6 2.0407 -0.7225 -1.2488 21 1 1.7022 -0.1933 -2.1395 22 6 1.4986 -2.1532 -1.2684 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5145 0.8895 25 1 -0.3633 0.5129 -0.8905 26 1 1.6371 -1.6252 1.2601 27 1 3.8287 -1.2562 2.1120 28 1 3.8760 0.2926 1.2356 29 1 3.6362 -2.4764 -0.0274 30 1 5.0900 -1.4492 -0.0276 31 1 5.1044 -1.5779 -2.3191 32 1 3.5137 -2.3092 -2.6401 33 1 4.1666 -0.9143 -4.5483 34 1 2.7881 -0.1610 -3.7114 35 1 4.8370 1.2745 -5.4125 36 1 3.4587 2.0275 -4.5749 37 1 4.7382 4.6985 -6.7640 38 1 1.8366 -2.6819 -0.3771 39 1 0.4090 -2.1287 -1.2853 40 1 1.8640 -2.6681 -2.1569 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379466264.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:47 Heat of formation + Delta-G solvation = -40.681637 kcal Electronic energy + Delta-G solvation = -18411.221567 eV Core-core repulsion = 15646.924742 eV Total energy + Delta-G solvation = -2764.296825 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.02874 -36.70783 -34.61436 -32.90492 -32.60637 -29.58978 -28.28293 -26.98382 -26.30578 -24.19646 -22.28985 -22.04913 -21.06977 -18.94548 -16.36952 -16.25960 -16.06419 -15.23307 -15.14494 -14.92305 -14.40421 -14.27560 -14.06183 -13.55413 -12.96471 -12.87212 -12.48555 -12.44986 -11.84741 -11.80157 -11.68253 -11.53761 -11.18823 -10.95267 -10.86762 -10.75176 -10.70626 -10.66351 -10.27727 -9.96152 -9.04337 -8.74028 -8.47582 -8.08478 -7.96096 -6.05528 -4.06390 3.36157 3.38248 3.42757 3.91585 4.21088 4.39757 4.75300 4.91678 5.02588 5.10267 5.13033 5.16988 5.30872 5.32777 5.40217 5.41129 5.52562 5.63508 5.68888 5.70109 5.80003 5.90858 5.96764 6.05224 6.09124 6.11983 6.21091 6.29112 6.32405 6.97056 7.15379 7.22884 7.29334 7.38799 7.49516 7.86096 8.22862 8.68292 9.08225 9.58265 11.06178 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.028562 B = 0.005222 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.078938 B = 5360.810823 C = 5499.495863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.091 3.909 3 H 0.093 0.907 4 N -0.681 5.681 5 C 0.060 3.940 6 C 0.015 3.985 7 N -0.512 5.512 8 C 0.057 3.943 9 C 0.070 3.930 10 O -0.379 6.379 11 C 0.195 3.805 12 C -0.510 4.510 13 H 0.066 0.934 14 C 0.055 3.945 15 N -0.901 5.901 16 Si 0.907 3.093 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.045 3.955 21 H 0.090 0.910 22 C -0.191 4.191 23 H 0.053 0.947 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.332 0.668 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.029 0.971 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.042 0.958 33 H 0.037 0.963 34 H 0.034 0.966 35 H 0.001 0.999 36 H 0.002 0.998 37 H 0.263 0.737 38 H 0.053 0.947 39 H 0.065 0.935 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.855 -12.834 11.428 18.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.019 4.019 3 H 0.111 0.889 4 N -0.310 5.310 5 C -0.070 4.070 6 C -0.114 4.114 7 N -0.235 5.235 8 C -0.071 4.071 9 C -0.009 4.009 10 O -0.298 6.298 11 C 0.120 3.880 12 C -0.549 4.549 13 H 0.084 0.916 14 C -0.145 4.145 15 N -0.540 5.540 16 Si 0.735 3.265 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.065 4.065 21 H 0.108 0.892 22 C -0.250 4.250 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.150 0.850 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.047 0.953 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.019 0.981 36 H 0.020 0.980 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.640 -11.627 11.861 17.887 hybrid contribution 0.279 -0.824 -1.102 1.404 sum -6.360 -12.451 10.758 17.642 Atomic orbital electron populations 1.21858 0.94327 1.01784 1.02397 1.21614 0.94640 0.99107 0.86555 0.88906 1.60860 1.07652 1.22809 1.39721 1.22087 0.87454 1.02025 0.95415 1.22846 1.01078 0.95379 0.92126 1.62188 1.06845 1.53138 1.01342 1.22212 1.00354 0.94559 0.89944 1.22201 0.95200 0.88519 0.94949 1.87944 1.67366 1.27192 1.47346 1.20159 0.96152 0.86475 0.85178 1.21026 1.27265 1.00323 1.06240 0.91609 1.24943 0.96093 0.98680 0.94823 1.69957 1.41377 1.32151 1.10560 0.86406 0.80624 0.81605 0.77900 1.20065 1.21217 1.19998 1.22461 0.88047 0.95116 1.00888 0.89169 1.22531 1.01992 0.98795 1.01696 0.92766 0.91772 0.91850 0.85010 0.90648 0.89710 0.95306 0.90316 0.90374 0.93978 0.94509 0.94802 0.98113 0.98000 0.92704 0.92812 0.91567 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.06 37.16 0.34 -1.16 16 2 C 0.09 1.14 2.95 -67.66 -0.20 0.94 16 3 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 4 N -0.68 -7.76 6.48 -106.56 -0.69 -8.45 16 5 C 0.06 0.70 6.73 -3.74 -0.03 0.67 16 6 C 0.02 0.19 5.20 -3.76 -0.02 0.17 16 7 N -0.51 -7.79 4.56 -226.50 -1.03 -8.82 16 8 C 0.06 0.88 5.23 -3.83 -0.02 0.86 16 9 C 0.07 1.33 6.08 37.16 0.23 1.56 16 10 O -0.38 -9.46 10.26 -35.23 -0.36 -9.83 16 11 C 0.19 5.50 5.69 36.01 0.20 5.71 16 12 C -0.51 -15.43 9.43 -34.44 -0.32 -15.75 16 13 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 16 Si 0.91 22.31 29.54 -169.99 -5.02 17.29 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 20 C 0.05 0.60 2.39 -67.66 -0.16 0.44 16 21 H 0.09 1.37 6.51 -51.93 -0.34 1.04 16 22 C -0.19 -2.04 7.85 37.16 0.29 -1.75 16 23 H 0.05 0.49 6.40 -51.93 -0.33 0.16 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.33 3.32 7.18 -39.29 -0.28 3.04 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.03 0.33 6.35 -51.93 -0.33 0.00 16 30 H 0.08 0.99 8.02 -51.93 -0.42 0.57 16 31 H 0.08 1.22 7.92 -51.93 -0.41 0.81 16 32 H 0.04 0.56 5.90 -51.93 -0.31 0.25 16 33 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.03 0.64 6.55 -51.93 -0.34 0.30 16 35 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 36 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.05 0.54 5.10 -51.93 -0.26 0.27 16 39 H 0.07 0.63 6.41 -51.93 -0.33 0.30 16 40 H 0.06 0.65 6.25 -51.93 -0.32 0.32 16 LS Contribution 305.35 15.07 4.60 4.60 Total: -1.00 -31.71 305.35 -8.16 -39.87 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -6.61 Total: -1.17 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: 0.21 Total: -6.77 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: -0.99 Total: -44.00 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -0.36 Total: -9.83 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.71 -8.16 -39.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379466264.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.810 kcal (2) G-P(sol) polarization free energy of solvation -31.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds