Wall clock time and date at job start Mon Mar 30 2020 04:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.50314 * 2 1 4 4 N 1.46953 * 109.49301 * 120.05426 * 2 1 3 5 5 C 1.47001 * 110.89383 * 179.29278 * 4 2 1 6 6 C 1.53053 * 109.33854 * 300.68831 * 5 4 2 7 7 N 1.46961 * 109.38065 * 58.39292 * 6 5 4 8 8 C 1.46895 * 111.00175 * 176.79966 * 7 6 5 9 9 C 1.53000 * 109.47368 * 195.61848 * 8 7 6 10 10 O 1.42900 * 109.47231 * 64.31423 * 9 8 7 11 11 C 1.42896 * 114.00128 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.47343 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99975 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00234 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99726 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00086 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46838 * 60.00061 * 16 14 12 18 18 H 1.48492 * 109.47262 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47134 * 300.00261 * 16 14 12 20 20 C 1.46951 * 110.87900 * 300.67122 * 7 6 5 21 21 H 1.08999 * 109.49091 * 179.31059 * 20 7 6 22 22 C 1.53004 * 109.48890 * 299.34731 * 20 7 6 23 23 H 1.09001 * 109.46592 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47050 * 300.04793 * 1 2 3 25 25 H 1.08996 * 109.47152 * 60.06113 * 1 2 3 26 26 H 1.00901 * 111.00076 * 55.42211 * 4 2 1 27 27 H 1.08999 * 109.51860 * 180.72291 * 5 4 2 28 28 H 1.08992 * 109.48733 * 60.64272 * 5 4 2 29 29 H 1.08992 * 109.49172 * 298.41426 * 6 5 4 30 30 H 1.08996 * 109.48949 * 178.36914 * 6 5 4 31 31 H 1.09003 * 109.47148 * 315.61790 * 8 7 6 32 32 H 1.08994 * 109.47286 * 75.61807 * 8 7 6 33 33 H 1.08996 * 109.47385 * 184.31516 * 9 8 7 34 34 H 1.09005 * 109.46987 * 304.31922 * 9 8 7 35 35 H 1.09002 * 109.47051 * 300.00064 * 11 10 9 36 36 H 1.09004 * 109.47220 * 59.99987 * 11 10 9 37 37 H 0.96999 * 119.99862 * 180.02562 * 15 14 12 38 38 H 1.09007 * 109.46564 * 60.00482 * 22 20 7 39 39 H 1.09002 * 109.47415 * 180.02562 * 22 20 7 40 40 H 1.09000 * 109.46882 * 300.00707 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 7 2.0204 -0.6938 1.1990 5 6 3.4898 -0.7265 1.2217 6 6 4.0000 -1.4490 -0.0274 7 7 3.5097 -0.7552 -1.2265 8 6 4.0411 -1.3750 -2.4477 9 6 3.8427 -0.4245 -3.6301 10 8 4.6151 0.7600 -3.4239 11 6 4.4997 1.7196 -4.4764 12 6 5.3504 2.9215 -4.1559 13 1 5.9216 2.9499 -3.2398 14 6 5.3994 3.9849 -5.0321 15 7 4.7034 3.9505 -6.1474 16 14 6.4533 5.4751 -4.6344 17 1 7.8716 5.0563 -4.4987 18 1 6.3345 6.4717 -5.7287 19 1 5.9921 6.0815 -3.3596 20 6 2.0407 -0.7225 -1.2488 21 1 1.7022 -0.1933 -2.1395 22 6 1.4986 -2.1532 -1.2684 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5145 0.8895 25 1 -0.3633 0.5129 -0.8905 26 1 1.6371 -1.6252 1.2601 27 1 3.8287 -1.2562 2.1120 28 1 3.8760 0.2926 1.2356 29 1 3.6362 -2.4764 -0.0274 30 1 5.0900 -1.4492 -0.0276 31 1 5.1044 -1.5779 -2.3191 32 1 3.5137 -2.3092 -2.6401 33 1 4.1666 -0.9143 -4.5483 34 1 2.7881 -0.1610 -3.7114 35 1 4.8370 1.2745 -5.4125 36 1 3.4587 2.0275 -4.5749 37 1 4.7382 4.6985 -6.7640 38 1 1.8366 -2.6819 -0.3771 39 1 0.4090 -2.1287 -1.2853 40 1 1.8640 -2.6681 -2.1569 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379466264.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:47 Heat of formation + Delta-G solvation = -64.955727 kcal Electronic energy + Delta-G solvation = -18412.274170 eV Core-core repulsion = 15646.924742 eV Total energy + Delta-G solvation = -2765.349428 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.08108 -38.52839 -35.88965 -34.82417 -33.84250 -31.02978 -29.37074 -28.84559 -27.43746 -25.36861 -24.47144 -23.12711 -22.33522 -19.99354 -18.61726 -17.66366 -17.37120 -16.83918 -16.21751 -16.13353 -16.00791 -15.83152 -15.40725 -14.78974 -14.56737 -14.02954 -13.67078 -13.54967 -13.45741 -13.13686 -12.94117 -12.73900 -12.58228 -12.54943 -12.40362 -12.31720 -12.03058 -11.79894 -11.74737 -11.48112 -11.25639 -10.85792 -10.19878 -9.47037 -9.02158 -8.32559 -6.44854 1.38570 1.43822 1.52205 2.34431 2.83191 3.00875 3.21704 3.28472 3.85349 3.95867 4.03484 4.11049 4.18677 4.26924 4.36877 4.44099 4.48246 4.50073 4.56393 4.60308 4.70545 4.79692 4.84382 4.91438 4.95194 4.99685 5.07483 5.14381 5.17029 5.30965 5.34921 5.54263 5.96199 5.98575 6.10465 6.24433 6.54474 6.55907 6.84867 7.27370 8.79738 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.028562 B = 0.005222 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.078938 B = 5360.810823 C = 5499.495863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.094 3.906 3 H 0.056 0.944 4 N -0.677 5.677 5 C 0.063 3.937 6 C 0.019 3.981 7 N -0.545 5.545 8 C 0.067 3.933 9 C 0.060 3.940 10 O -0.394 6.394 11 C 0.211 3.789 12 C -0.547 4.547 13 H 0.059 0.941 14 C 0.007 3.993 15 N -0.931 5.931 16 Si 0.983 3.017 17 H -0.265 1.265 18 H -0.273 1.273 19 H -0.267 1.267 20 C 0.045 3.955 21 H 0.062 0.938 22 C -0.181 4.181 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.346 0.654 27 H 0.103 0.897 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.045 0.955 34 H 0.033 0.967 35 H -0.017 1.017 36 H -0.020 1.020 37 H 0.271 0.729 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.908 -13.687 12.657 19.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.017 4.017 3 H 0.074 0.926 4 N -0.307 5.307 5 C -0.067 4.067 6 C -0.110 4.110 7 N -0.269 5.269 8 C -0.060 4.060 9 C -0.017 4.017 10 O -0.314 6.314 11 C 0.135 3.865 12 C -0.585 4.585 13 H 0.077 0.923 14 C -0.192 4.192 15 N -0.571 5.571 16 Si 0.805 3.195 17 H -0.189 1.189 18 H -0.197 1.197 19 H -0.192 1.192 20 C -0.065 4.065 21 H 0.080 0.920 22 C -0.240 4.240 23 H 0.092 0.908 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.165 0.835 27 H 0.121 0.879 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.001 0.999 36 H -0.003 1.003 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.707 -12.514 13.102 19.319 hybrid contribution 0.248 -0.610 -1.489 1.628 sum -6.459 -13.124 11.613 18.676 Atomic orbital electron populations 1.21803 0.92418 1.03057 1.02374 1.21496 0.96087 0.97253 0.86853 0.92588 1.60810 1.07537 1.23607 1.38795 1.22077 0.87547 1.00832 0.96241 1.22863 1.00887 0.96206 0.91053 1.62103 1.08159 1.54566 1.02079 1.22093 1.00780 0.94356 0.88817 1.22551 0.94462 0.87169 0.97524 1.87899 1.68607 1.28601 1.46288 1.19767 0.94376 0.86994 0.85315 1.21339 1.28502 1.01931 1.06695 0.92293 1.25965 0.97116 1.01837 0.94250 1.70065 1.42196 1.33422 1.11370 0.85241 0.78790 0.77204 0.78218 1.18932 1.19745 1.19157 1.22422 0.87247 0.96858 0.99985 0.91970 1.22429 1.02858 0.96460 1.02208 0.90759 0.91460 0.92265 0.83491 0.87906 0.92359 0.93207 0.90711 0.90571 0.90904 0.93716 0.94891 0.99907 1.00273 0.92028 0.91489 0.90049 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.06 71.98 0.65 -2.02 16 2 C 0.09 2.32 2.95 44.92 0.13 2.45 16 3 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 4 N -0.68 -14.29 6.48 -491.04 -3.18 -17.48 16 5 C 0.06 1.38 6.73 86.30 0.58 1.96 16 6 C 0.02 0.44 5.20 86.31 0.45 0.89 16 7 N -0.54 -16.39 4.56 -870.51 -3.97 -20.35 16 8 C 0.07 2.04 5.23 86.30 0.45 2.49 16 9 C 0.06 2.36 6.08 71.98 0.44 2.80 16 10 O -0.39 -20.41 10.26 -148.98 -1.53 -21.94 16 11 C 0.21 12.42 5.69 71.24 0.41 12.83 16 12 C -0.55 -33.96 9.43 25.60 0.24 -33.72 16 13 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 14 C 0.01 0.40 5.46 84.66 0.46 0.86 16 15 N -0.93 -57.41 13.29 21.45 0.28 -57.12 16 16 Si 0.98 45.65 29.54 68.60 2.03 47.68 16 17 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 20 C 0.05 1.18 2.39 44.92 0.11 1.29 16 21 H 0.06 1.95 6.51 -2.39 -0.02 1.94 16 22 C -0.18 -3.40 7.85 71.98 0.56 -2.83 16 23 H 0.07 1.13 6.40 -2.39 -0.02 1.12 16 24 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.35 5.84 7.18 -89.69 -0.64 5.19 16 27 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.05 0.96 6.35 -2.39 -0.02 0.95 16 30 H 0.07 1.79 8.02 -2.39 -0.02 1.77 16 31 H 0.08 2.33 7.92 -2.39 -0.02 2.31 16 32 H 0.07 1.77 5.90 -2.39 -0.01 1.75 16 33 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.03 1.29 6.55 -2.38 -0.02 1.27 16 35 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 36 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16 37 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 38 H 0.07 1.09 5.10 -2.38 -0.01 1.08 16 39 H 0.08 1.29 6.41 -2.39 -0.02 1.28 16 40 H 0.06 1.11 6.25 -2.39 -0.01 1.09 16 Total: -1.00 -69.58 305.35 -1.51 -71.09 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 0.37 Total: 11.13 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 4.48 Total: -13.00 kcal Atomic # 7 Polarization: -88.09 SS G_CDS: -6.87 Total: -94.95 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -1.53 Total: -21.94 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -69.58 -1.51 -71.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379466264.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.137 kcal (2) G-P(sol) polarization free energy of solvation -69.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds