Wall clock time and date at job start Mon Mar 30 2020 04:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.48902 * 2 1 4 4 N 1.46955 * 109.48659 * 239.95892 * 2 1 3 5 5 C 1.46956 * 110.87899 * 180.70920 * 4 2 1 6 6 C 1.53053 * 109.36119 * 59.32284 * 5 4 2 7 7 N 1.46955 * 109.36509 * 301.59537 * 6 5 4 8 8 C 1.46893 * 110.99907 * 183.19017 * 7 6 5 9 9 C 1.52999 * 109.47323 * 66.04900 * 8 7 6 10 10 O 1.42898 * 109.47174 * 64.99551 * 9 8 7 11 11 C 1.42909 * 114.00197 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.47070 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00202 * 359.97438 * 12 11 10 14 14 C 1.37884 * 119.99746 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99573 * 0.27650 * 14 12 11 16 16 Si 1.86800 * 119.99781 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47035 * 60.00183 * 16 14 12 18 18 H 1.48503 * 109.46845 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47237 * 299.99939 * 16 14 12 20 20 C 1.46955 * 110.88123 * 59.32176 * 7 6 5 21 21 H 1.08999 * 109.48880 * 60.64606 * 20 7 6 22 22 C 1.52991 * 109.49327 * 180.71180 * 20 7 6 23 23 H 1.08999 * 109.46780 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46694 * 300.04148 * 1 2 3 25 25 H 1.09000 * 109.47053 * 60.03703 * 1 2 3 26 26 H 1.00908 * 111.00060 * 56.83992 * 4 2 1 27 27 H 1.08999 * 109.49265 * 299.35500 * 5 4 2 28 28 H 1.08996 * 109.50338 * 179.29863 * 5 4 2 29 29 H 1.08997 * 109.48725 * 181.62901 * 6 5 4 30 30 H 1.08993 * 109.48828 * 61.56753 * 6 5 4 31 31 H 1.08999 * 109.47380 * 306.04802 * 8 7 6 32 32 H 1.09001 * 109.47114 * 186.04251 * 8 7 6 33 33 H 1.09008 * 109.47150 * 305.00033 * 9 8 7 34 34 H 1.08998 * 109.47779 * 184.99685 * 9 8 7 35 35 H 1.09000 * 109.46355 * 60.00386 * 11 10 9 36 36 H 1.08999 * 109.46615 * 300.00542 * 11 10 9 37 37 H 0.97001 * 120.00651 * 359.71956 * 15 14 12 38 38 H 1.09010 * 109.46887 * 59.99957 * 22 20 7 39 39 H 1.08997 * 109.47820 * 180.02562 * 22 20 7 40 40 H 1.09003 * 109.47222 * 300.00272 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 7 2.0203 -0.6935 -1.1993 5 6 3.4893 -0.7262 -1.2217 6 6 3.9999 -1.4491 0.0270 7 7 3.5097 -0.7555 1.2262 8 6 4.0412 -1.3757 2.4472 9 6 5.5567 -1.1735 2.5038 10 8 5.8470 0.2199 2.6304 11 6 7.2429 0.5197 2.6917 12 6 7.4315 2.0089 2.8245 13 1 6.5715 2.6613 2.8582 14 6 8.7022 2.5387 2.9018 15 7 9.7496 1.7447 2.8542 16 14 8.9360 4.3847 3.0657 17 1 8.2733 4.8593 4.3070 18 1 10.3866 4.6962 3.1295 19 1 8.3341 5.0661 1.8915 20 6 2.0407 -0.7228 1.2487 21 1 1.6544 -1.7420 1.2623 22 6 1.5656 0.0203 2.4988 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5145 0.8897 25 1 -0.3633 0.5133 -0.8903 26 1 1.6552 -0.2676 -2.0380 27 1 3.8756 0.2930 -1.2353 28 1 3.8280 -1.2554 -2.1123 29 1 5.0899 -1.4491 0.0269 30 1 3.6360 -2.4765 0.0267 31 1 3.8170 -2.4424 2.4401 32 1 3.5802 -0.9132 3.3199 33 1 6.0089 -1.5572 1.5892 34 1 5.9629 -1.7087 3.3621 35 1 7.7296 0.1712 1.7807 36 1 7.6844 0.0195 3.5537 37 1 9.6282 0.7862 2.7688 38 1 1.9514 1.0397 2.4840 39 1 0.4761 0.0440 2.5154 40 1 1.9311 -0.4937 3.3879 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379466266.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:51 Heat of formation + Delta-G solvation = -45.586338 kcal Electronic energy + Delta-G solvation = -18316.971140 eV Core-core repulsion = 15552.461631 eV Total energy + Delta-G solvation = -2764.509509 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.56000 -36.85829 -34.79452 -33.36148 -32.86254 -29.62059 -28.20463 -26.90531 -26.10655 -23.66779 -22.44077 -21.93707 -20.72392 -19.47527 -16.92914 -16.44840 -15.94511 -15.59427 -15.19083 -14.77088 -14.31372 -14.17940 -13.70641 -13.50374 -13.15882 -12.91848 -12.47310 -12.37245 -11.95582 -11.76649 -11.74736 -11.55821 -11.39922 -11.06578 -10.91018 -10.71182 -10.63443 -10.28334 -10.08161 -9.99019 -8.76978 -8.59003 -8.54003 -8.18042 -8.03519 -6.42246 -4.09864 3.45180 3.48192 3.66919 3.93776 4.08719 4.47661 4.70424 4.80098 5.03481 5.07317 5.27005 5.35035 5.35590 5.39157 5.39731 5.44205 5.59486 5.62695 5.68924 5.77716 5.82874 5.86856 5.95503 5.97796 6.02123 6.13024 6.16511 6.30256 6.38157 6.81504 6.90588 7.16632 7.19456 7.31414 7.37752 7.97155 8.24797 8.70682 8.87608 9.60619 10.98011 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.028476 B = 0.005153 C = 0.005008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.034447 B = 5431.993578 C = 5590.056857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.088 3.912 3 H 0.049 0.951 4 N -0.690 5.690 5 C 0.059 3.941 6 C 0.056 3.944 7 N -0.522 5.522 8 C 0.057 3.943 9 C 0.064 3.936 10 O -0.370 6.370 11 C 0.185 3.815 12 C -0.592 4.592 13 H 0.060 0.940 14 C 0.016 3.984 15 N -0.913 5.913 16 Si 1.079 2.921 17 H -0.286 1.286 18 H -0.281 1.281 19 H -0.286 1.286 20 C 0.091 3.909 21 H 0.041 0.959 22 C -0.150 4.150 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.053 0.947 26 H 0.339 0.661 27 H 0.044 0.956 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.034 0.966 31 H 0.038 0.962 32 H 0.087 0.913 33 H 0.035 0.965 34 H 0.038 0.962 35 H -0.008 1.008 36 H -0.008 1.008 37 H 0.266 0.734 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.752 -6.571 -5.585 18.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 H 0.067 0.933 4 N -0.321 5.321 5 C -0.070 4.070 6 C -0.072 4.072 7 N -0.247 5.247 8 C -0.070 4.070 9 C -0.014 4.014 10 O -0.289 6.289 11 C 0.111 3.889 12 C -0.630 4.630 13 H 0.078 0.922 14 C -0.187 4.187 15 N -0.550 5.550 16 Si 0.906 3.094 17 H -0.212 1.212 18 H -0.207 1.207 19 H -0.213 1.213 20 C -0.018 4.018 21 H 0.059 0.941 22 C -0.208 4.208 23 H 0.079 0.921 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.157 0.843 27 H 0.062 0.938 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.105 0.895 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.010 0.990 36 H 0.009 0.991 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.621 -5.380 -5.184 17.315 hybrid contribution -0.917 -1.502 -0.392 1.803 sum -16.538 -6.882 -5.576 18.760 Atomic orbital electron populations 1.21860 0.94312 1.02305 1.01804 1.21540 0.94605 0.96168 0.89872 0.93257 1.60591 1.08738 1.58126 1.04681 1.21965 0.87319 1.00057 0.97661 1.22176 1.00361 0.95114 0.89560 1.62028 1.07091 1.53859 1.01707 1.22207 0.95288 0.96003 0.93543 1.22311 0.93926 0.86572 0.98587 1.87982 1.26933 1.19775 1.94218 1.20254 0.77600 0.97316 0.93765 1.21897 0.95308 0.91060 1.54712 0.92194 1.25921 0.91534 1.07428 0.93815 1.70797 1.31720 1.05729 1.46705 0.83413 0.76002 0.73309 0.76701 1.21245 1.20675 1.21260 1.21606 0.87693 0.97829 0.94652 0.94060 1.21979 1.00291 1.01886 0.96641 0.92066 0.91658 0.92750 0.84300 0.93797 0.90528 0.89962 0.94746 0.94437 0.89482 0.94658 0.94395 0.99019 0.99082 0.92381 0.91297 0.92167 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.15 37.16 0.34 -1.03 16 2 C 0.09 1.08 2.70 -67.65 -0.18 0.90 16 3 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 4 N -0.69 -8.16 6.55 -106.59 -0.70 -8.86 16 5 C 0.06 0.78 6.72 -3.77 -0.03 0.75 16 6 C 0.06 0.82 5.41 -3.77 -0.02 0.80 16 7 N -0.52 -8.36 4.47 -226.51 -1.01 -9.38 16 8 C 0.06 0.91 5.11 -3.83 -0.02 0.89 16 9 C 0.06 1.24 6.00 37.16 0.22 1.46 16 10 O -0.37 -9.31 10.27 -35.23 -0.36 -9.67 16 11 C 0.19 5.22 5.00 36.00 0.18 5.40 16 12 C -0.59 -18.08 9.43 -34.44 -0.32 -18.41 16 13 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 14 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 15 N -0.91 -28.52 13.65 55.43 0.76 -27.76 16 16 Si 1.08 25.99 29.90 -169.99 -5.08 20.91 16 17 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 20 C 0.09 1.22 2.07 -67.66 -0.14 1.08 16 21 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 22 C -0.15 -1.86 8.58 37.15 0.32 -1.54 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.57 6.48 -51.93 -0.34 0.23 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.34 3.36 8.83 -39.29 -0.35 3.01 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.08 1.30 6.24 -51.93 -0.32 0.97 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.04 0.52 8.12 -51.93 -0.42 0.10 16 32 H 0.09 1.39 5.74 -51.93 -0.30 1.09 16 33 H 0.04 0.66 6.28 -51.92 -0.33 0.34 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 35 H -0.01 -0.23 8.00 -51.93 -0.42 -0.64 16 36 H -0.01 -0.24 8.01 -51.93 -0.42 -0.66 16 37 H 0.27 8.27 7.22 -40.82 -0.29 7.98 16 38 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 39 H 0.06 0.60 6.48 -51.93 -0.34 0.26 16 40 H 0.06 0.74 6.15 -51.93 -0.32 0.42 16 LS Contribution 310.45 15.07 4.68 4.68 Total: -1.00 -33.04 310.45 -8.32 -41.35 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -6.85 Total: -1.95 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 0.25 Total: -9.32 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: -0.95 Total: -46.00 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -0.36 Total: -9.67 kcal Atomic # 14 Polarization: 25.99 SS G_CDS: -5.08 Total: 20.91 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.04 -8.32 -41.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379466266.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.233 kcal (2) G-P(sol) polarization free energy of solvation -33.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds