Wall clock time and date at job start Mon Mar 30 2020 04:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.48902 * 2 1 4 4 N 1.46955 * 109.48659 * 239.95892 * 2 1 3 5 5 C 1.46956 * 110.87899 * 180.70920 * 4 2 1 6 6 C 1.53053 * 109.36119 * 59.32284 * 5 4 2 7 7 N 1.46955 * 109.36509 * 301.59537 * 6 5 4 8 8 C 1.46893 * 110.99907 * 183.19017 * 7 6 5 9 9 C 1.52999 * 109.47323 * 66.04900 * 8 7 6 10 10 O 1.42898 * 109.47174 * 64.99551 * 9 8 7 11 11 C 1.42909 * 114.00197 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.47070 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00202 * 359.97438 * 12 11 10 14 14 C 1.37884 * 119.99746 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99573 * 0.27650 * 14 12 11 16 16 Si 1.86800 * 119.99781 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47035 * 60.00183 * 16 14 12 18 18 H 1.48503 * 109.46845 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47237 * 299.99939 * 16 14 12 20 20 C 1.46955 * 110.88123 * 59.32176 * 7 6 5 21 21 H 1.08999 * 109.48880 * 60.64606 * 20 7 6 22 22 C 1.52991 * 109.49327 * 180.71180 * 20 7 6 23 23 H 1.08999 * 109.46780 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46694 * 300.04148 * 1 2 3 25 25 H 1.09000 * 109.47053 * 60.03703 * 1 2 3 26 26 H 1.00908 * 111.00060 * 56.83992 * 4 2 1 27 27 H 1.08999 * 109.49265 * 299.35500 * 5 4 2 28 28 H 1.08996 * 109.50338 * 179.29863 * 5 4 2 29 29 H 1.08997 * 109.48725 * 181.62901 * 6 5 4 30 30 H 1.08993 * 109.48828 * 61.56753 * 6 5 4 31 31 H 1.08999 * 109.47380 * 306.04802 * 8 7 6 32 32 H 1.09001 * 109.47114 * 186.04251 * 8 7 6 33 33 H 1.09008 * 109.47150 * 305.00033 * 9 8 7 34 34 H 1.08998 * 109.47779 * 184.99685 * 9 8 7 35 35 H 1.09000 * 109.46355 * 60.00386 * 11 10 9 36 36 H 1.08999 * 109.46615 * 300.00542 * 11 10 9 37 37 H 0.97001 * 120.00651 * 359.71956 * 15 14 12 38 38 H 1.09010 * 109.46887 * 59.99957 * 22 20 7 39 39 H 1.08997 * 109.47820 * 180.02562 * 22 20 7 40 40 H 1.09003 * 109.47222 * 300.00272 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 7 2.0203 -0.6935 -1.1993 5 6 3.4893 -0.7262 -1.2217 6 6 3.9999 -1.4491 0.0270 7 7 3.5097 -0.7555 1.2262 8 6 4.0412 -1.3757 2.4472 9 6 5.5567 -1.1735 2.5038 10 8 5.8470 0.2199 2.6304 11 6 7.2429 0.5197 2.6917 12 6 7.4315 2.0089 2.8245 13 1 6.5715 2.6613 2.8582 14 6 8.7022 2.5387 2.9018 15 7 9.7496 1.7447 2.8542 16 14 8.9360 4.3847 3.0657 17 1 8.2733 4.8593 4.3070 18 1 10.3866 4.6962 3.1295 19 1 8.3341 5.0661 1.8915 20 6 2.0407 -0.7228 1.2487 21 1 1.6544 -1.7420 1.2623 22 6 1.5656 0.0203 2.4988 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5145 0.8897 25 1 -0.3633 0.5133 -0.8903 26 1 1.6552 -0.2676 -2.0380 27 1 3.8756 0.2930 -1.2353 28 1 3.8280 -1.2554 -2.1123 29 1 5.0899 -1.4491 0.0269 30 1 3.6360 -2.4765 0.0267 31 1 3.8170 -2.4424 2.4401 32 1 3.5802 -0.9132 3.3199 33 1 6.0089 -1.5572 1.5892 34 1 5.9629 -1.7087 3.3621 35 1 7.7296 0.1712 1.7807 36 1 7.6844 0.0195 3.5537 37 1 9.6282 0.7862 2.7688 38 1 1.9514 1.0397 2.4840 39 1 0.4761 0.0440 2.5154 40 1 1.9311 -0.4937 3.3879 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379466266.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:50 Heat of formation + Delta-G solvation = -70.821699 kcal Electronic energy + Delta-G solvation = -18318.065427 eV Core-core repulsion = 15552.461631 eV Total energy + Delta-G solvation = -2765.603796 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.68040 -38.67267 -36.10872 -35.08357 -34.35928 -31.04076 -29.23298 -28.58996 -27.65931 -24.93123 -24.65587 -23.02793 -21.99488 -20.55142 -19.19122 -17.63097 -17.55299 -16.96389 -16.35604 -16.17113 -15.76919 -15.57024 -15.48432 -14.80608 -14.70960 -14.34328 -13.85185 -13.45139 -13.35703 -13.33423 -13.08387 -12.72251 -12.63685 -12.55734 -12.49573 -12.02085 -11.93674 -11.90411 -11.48952 -11.36529 -10.85064 -10.84046 -10.32167 -9.56261 -9.21133 -8.84310 -6.54662 1.51353 1.60560 1.81953 2.48842 2.78868 3.02681 3.07468 3.14019 3.72397 3.91940 3.97216 4.15326 4.20063 4.27329 4.28306 4.36185 4.41790 4.49056 4.50356 4.56549 4.61169 4.74890 4.78795 4.83686 4.87957 4.89859 5.01295 5.03108 5.09136 5.31551 5.37965 5.68099 5.87992 5.90924 6.05826 6.20345 6.32799 6.44504 6.70464 7.26240 8.56737 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.028476 B = 0.005153 C = 0.005008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.034447 B = 5431.993578 C = 5590.056857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.087 3.913 3 H 0.025 0.975 4 N -0.683 5.683 5 C 0.063 3.937 6 C 0.056 3.944 7 N -0.550 5.550 8 C 0.065 3.935 9 C 0.056 3.944 10 O -0.387 6.387 11 C 0.197 3.803 12 C -0.621 4.621 13 H 0.050 0.950 14 C -0.028 4.028 15 N -0.928 5.928 16 Si 1.128 2.872 17 H -0.266 1.266 18 H -0.274 1.274 19 H -0.269 1.269 20 C 0.091 3.909 21 H 0.048 0.952 22 C -0.146 4.146 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.352 0.648 27 H 0.019 0.981 28 H 0.097 0.903 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.038 0.962 34 H 0.048 0.952 35 H -0.023 1.023 36 H -0.020 1.020 37 H 0.255 0.745 38 H 0.045 0.955 39 H 0.087 0.913 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.411 -6.420 -5.857 20.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.023 4.023 3 H 0.043 0.957 4 N -0.316 5.316 5 C -0.067 4.067 6 C -0.072 4.072 7 N -0.275 5.275 8 C -0.062 4.062 9 C -0.022 4.022 10 O -0.306 6.306 11 C 0.122 3.878 12 C -0.658 4.658 13 H 0.069 0.931 14 C -0.226 4.226 15 N -0.565 5.565 16 Si 0.946 3.054 17 H -0.191 1.191 18 H -0.199 1.199 19 H -0.194 1.194 20 C -0.018 4.018 21 H 0.066 0.934 22 C -0.204 4.204 23 H 0.085 0.915 24 H 0.092 0.908 25 H 0.085 0.915 26 H 0.171 0.829 27 H 0.037 0.963 28 H 0.115 0.885 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.056 0.944 34 H 0.066 0.934 35 H -0.005 1.005 36 H -0.002 1.002 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.106 0.894 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.314 -5.265 -5.467 18.905 hybrid contribution -0.440 -1.649 -0.330 1.738 sum -17.754 -6.913 -5.797 19.915 Atomic orbital electron populations 1.21804 0.91775 1.02947 1.02914 1.21572 0.96531 0.94585 0.89598 0.95684 1.60610 1.07691 1.58029 1.05267 1.21916 0.88245 0.98691 0.97818 1.22155 0.99320 0.95851 0.89866 1.62013 1.08977 1.54630 1.01918 1.22122 0.92517 0.97715 0.93882 1.22654 0.96752 0.83615 0.99139 1.87934 1.24770 1.23638 1.94301 1.19920 0.79236 0.96289 0.92387 1.22239 0.95595 0.92277 1.55705 0.93123 1.27610 0.90982 1.11844 0.92117 1.70925 1.32348 1.05381 1.47814 0.82830 0.76643 0.67720 0.78165 1.19131 1.19921 1.19402 1.21699 0.86019 0.98380 0.95658 0.93406 1.21960 1.02003 1.00212 0.96195 0.91532 0.90805 0.91501 0.82873 0.96290 0.88472 0.91855 0.93609 0.91559 0.89502 0.94394 0.93372 1.00546 1.00221 0.93614 0.93615 0.89398 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.15 71.98 0.66 -1.56 16 2 C 0.09 2.02 2.70 44.92 0.12 2.14 16 3 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 4 N -0.68 -15.06 6.55 -491.13 -3.21 -18.27 16 5 C 0.06 1.61 6.72 86.31 0.58 2.19 16 6 C 0.06 1.62 5.41 86.31 0.47 2.09 16 7 N -0.55 -17.36 4.47 -870.55 -3.90 -21.25 16 8 C 0.07 2.02 5.11 86.30 0.44 2.47 16 9 C 0.06 2.16 6.00 71.98 0.43 2.59 16 10 O -0.39 -19.93 10.27 -148.98 -1.53 -21.46 16 11 C 0.20 11.44 5.00 71.23 0.36 11.79 16 12 C -0.62 -38.63 9.43 25.60 0.24 -38.39 16 13 H 0.05 3.17 7.81 -2.91 -0.02 3.15 16 14 C -0.03 -1.69 5.46 84.66 0.46 -1.23 16 15 N -0.93 -58.54 13.65 21.45 0.29 -58.25 16 16 Si 1.13 51.53 29.90 68.60 2.05 53.58 16 17 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 19 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 20 C 0.09 2.30 2.07 44.92 0.09 2.40 16 21 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 22 C -0.15 -3.43 8.58 71.98 0.62 -2.81 16 23 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.07 1.08 6.48 -2.38 -0.02 1.06 16 25 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.35 6.29 8.83 -89.69 -0.79 5.50 16 27 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.06 2.03 6.24 -2.39 -0.01 2.02 16 30 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.07 1.69 8.12 -2.39 -0.02 1.68 16 32 H 0.09 2.70 5.74 -2.39 -0.01 2.68 16 33 H 0.04 1.45 6.28 -2.38 -0.01 1.44 16 34 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 35 H -0.02 -1.38 8.00 -2.39 -0.02 -1.40 16 36 H -0.02 -1.17 8.01 -2.39 -0.02 -1.19 16 37 H 0.25 16.24 7.22 -92.71 -0.67 15.57 16 38 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.09 1.54 6.48 -2.39 -0.02 1.52 16 40 H 0.06 1.38 6.15 -2.39 -0.01 1.37 16 Total: -1.00 -71.32 310.45 -1.51 -72.83 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 0.32 Total: 11.13 kcal Atomic # 6 Polarization: -22.79 SS G_CDS: 4.47 Total: -18.32 kcal Atomic # 7 Polarization: -90.95 SS G_CDS: -6.82 Total: -97.77 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -1.53 Total: -21.46 kcal Atomic # 14 Polarization: 51.53 SS G_CDS: 2.05 Total: 53.58 kcal Total: -71.32 -1.51 -72.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379466266.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.013 kcal (2) G-P(sol) polarization free energy of solvation -71.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds