Wall clock time and date at job start Mon Mar 30 2020 04:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.48846 * 2 1 4 4 C 1.53053 * 109.49085 * 239.95458 * 2 1 3 5 5 H 1.08998 * 109.48872 * 178.46199 * 4 2 1 6 6 C 1.52996 * 109.48666 * 58.39592 * 4 2 1 7 7 N 1.46955 * 109.36242 * 298.43373 * 4 2 1 8 8 C 1.46955 * 110.87898 * 300.67842 * 7 4 2 9 9 C 1.53051 * 109.36721 * 59.32001 * 8 7 4 10 10 N 1.46955 * 109.36422 * 301.59858 * 9 8 7 11 11 C 1.46904 * 110.99824 * 183.18558 * 10 9 8 12 12 C 1.52993 * 109.46913 * 66.20449 * 11 10 9 13 13 O 1.42894 * 109.47380 * 64.99850 * 12 11 10 14 14 C 1.42904 * 113.99996 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47094 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99834 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00093 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00073 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00147 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47346 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47320 * 120.00132 * 19 17 15 22 22 H 1.48498 * 109.47664 * 240.00203 * 19 17 15 23 23 H 1.09003 * 109.46841 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47270 * 300.04460 * 1 2 3 25 25 H 1.09000 * 109.47442 * 60.04546 * 1 2 3 26 26 H 1.08999 * 109.47641 * 300.11504 * 6 4 2 27 27 H 1.09004 * 109.47072 * 60.11850 * 6 4 2 28 28 H 1.09005 * 109.46868 * 180.10759 * 6 4 2 29 29 H 1.00901 * 111.00068 * 64.54233 * 7 4 2 30 30 H 1.09000 * 109.49195 * 179.29379 * 8 7 4 31 31 H 1.09005 * 109.48958 * 299.35094 * 8 7 4 32 32 H 1.09001 * 109.49043 * 181.63362 * 9 8 7 33 33 H 1.09001 * 109.50363 * 61.57960 * 9 8 7 34 34 H 1.09004 * 109.46751 * 186.20572 * 11 10 9 35 35 H 1.09001 * 109.47101 * 306.19961 * 11 10 9 36 36 H 1.09001 * 109.46789 * 185.00070 * 12 11 10 37 37 H 1.09001 * 109.47177 * 304.99384 * 12 11 10 38 38 H 1.09003 * 109.47207 * 299.99994 * 14 13 12 39 39 H 1.09007 * 109.46996 * 60.00244 * 14 13 12 40 40 H 0.96994 * 120.00210 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7224 -1.2490 5 1 3.1303 -0.6986 -1.2628 6 6 1.4984 -0.0262 -2.4988 7 7 1.5809 -2.1180 -1.2268 8 6 2.0712 -2.8120 -0.0278 9 6 1.5606 -2.0896 1.2212 10 7 2.0204 -0.6939 1.1990 11 6 1.6135 0.0138 2.4203 12 6 2.3418 -0.5867 3.6243 13 8 3.7452 -0.3488 3.4994 14 6 4.5218 -0.8719 4.5789 15 6 5.9786 -0.5659 4.3441 16 1 6.2811 -0.0256 3.4593 17 6 6.9252 -0.9747 5.2595 18 7 6.5568 -1.6322 6.3373 19 14 8.7309 -0.5948 4.9689 20 1 8.8809 0.1503 3.6931 21 1 9.2492 0.2321 6.0883 22 1 9.4982 -1.8640 4.8945 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5145 0.8896 25 1 -0.3634 0.5131 -0.8904 26 1 0.4088 -0.0494 -2.4838 27 1 1.8396 1.0089 -2.5150 28 1 1.8607 -0.5421 -3.3881 29 1 0.5750 -2.1684 -1.2877 30 1 1.7074 -3.8394 -0.0279 31 1 3.1612 -2.8120 -0.0278 32 1 1.9469 -2.5855 2.1117 33 1 0.4710 -2.1134 1.2355 34 1 1.8690 1.0697 2.3306 35 1 0.5371 -0.0890 2.5583 36 1 1.9746 -0.1224 4.5396 37 1 2.1571 -1.6603 3.6623 38 1 4.1999 -0.4131 5.5138 39 1 4.3825 -1.9515 4.6370 40 1 7.2227 -1.9202 6.9810 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379466267.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:54 Heat of formation + Delta-G solvation = -41.786777 kcal Electronic energy + Delta-G solvation = -18323.070311 eV Core-core repulsion = 15558.725564 eV Total energy + Delta-G solvation = -2764.344747 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.02373 -36.76173 -34.62368 -32.89059 -32.61882 -29.71225 -28.06524 -27.07342 -26.46960 -23.79234 -22.76123 -22.23590 -20.68056 -19.06234 -16.39921 -16.36806 -15.63992 -15.52296 -15.09222 -14.95662 -14.57944 -14.27213 -13.94759 -13.53368 -13.17026 -12.71380 -12.53025 -12.32258 -12.06533 -11.79350 -11.70828 -11.56724 -11.18734 -10.99859 -10.89541 -10.76455 -10.69862 -10.61908 -10.31986 -9.95443 -9.02733 -8.76010 -8.47548 -8.09791 -7.97793 -6.06484 -4.07207 3.32358 3.38674 3.45923 3.90892 4.20179 4.39370 4.77152 4.85022 4.93886 5.12297 5.14200 5.18558 5.27931 5.30192 5.38018 5.43992 5.53076 5.63690 5.65283 5.68795 5.74552 5.87464 5.96550 6.03426 6.07696 6.10401 6.15065 6.27924 6.31481 6.96505 7.14168 7.22511 7.28598 7.38535 7.48250 7.85840 8.21826 8.66834 9.08001 9.57668 11.05337 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.031602 B = 0.005000 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.820556 B = 5598.984752 C = 5885.607537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.047 3.953 3 H 0.086 0.914 4 C 0.091 3.909 5 H 0.091 0.909 6 C -0.145 4.145 7 N -0.681 5.681 8 C 0.060 3.940 9 C 0.013 3.987 10 N -0.512 5.512 11 C 0.061 3.939 12 C 0.067 3.933 13 O -0.379 6.379 14 C 0.194 3.806 15 C -0.509 4.509 16 H 0.067 0.933 17 C 0.055 3.945 18 N -0.901 5.901 19 Si 0.906 3.094 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.332 0.668 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.029 0.971 34 H 0.079 0.921 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.035 0.965 38 H 0.001 0.999 39 H 0.002 0.998 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.831 1.079 -13.247 19.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.063 4.063 3 H 0.104 0.896 4 C -0.020 4.020 5 H 0.110 0.890 6 C -0.203 4.203 7 N -0.310 5.310 8 C -0.070 4.070 9 C -0.117 4.117 10 N -0.235 5.235 11 C -0.067 4.067 12 C -0.011 4.011 13 O -0.298 6.298 14 C 0.120 3.880 15 C -0.547 4.547 16 H 0.085 0.915 17 C -0.146 4.146 18 N -0.540 5.540 19 Si 0.734 3.266 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.209 1.209 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.150 0.850 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.047 0.953 34 H 0.098 0.902 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.019 0.981 39 H 0.020 0.980 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.621 0.853 -13.666 18.622 hybrid contribution -0.713 0.376 1.216 1.459 sum -13.334 1.229 -12.450 18.284 Atomic orbital electron populations 1.22536 0.98202 1.01809 1.02385 1.22455 0.92439 0.99430 0.92013 0.89600 1.21620 1.01024 0.86905 0.92435 0.89039 1.21858 1.00817 1.00197 0.97452 1.60856 1.16009 1.14324 1.39843 1.22084 1.02049 0.96488 0.86357 1.22897 0.97069 0.90543 1.01179 1.62192 1.58906 1.01273 1.01149 1.22153 0.95745 0.99142 0.89619 1.22251 0.85761 0.98008 0.95115 1.87951 1.14129 1.79626 1.48128 1.20178 0.90491 0.92947 0.84432 1.21102 0.90260 1.36007 1.07330 0.91488 1.24946 0.99617 0.95149 0.94863 1.69975 1.34175 1.38856 1.11040 0.86300 0.83940 0.78067 0.78306 1.19453 1.20924 1.20871 0.92713 0.92458 0.91692 0.92723 0.92025 0.91775 0.85008 0.90550 0.89557 0.89731 0.95312 0.90224 0.94444 0.94443 0.94687 0.98084 0.97986 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.91 7.82 37.16 0.29 -1.62 16 2 C 0.05 0.58 2.50 -67.65 -0.17 0.41 16 3 H 0.09 1.09 8.07 -51.93 -0.42 0.67 16 4 C 0.09 1.05 2.95 -67.66 -0.20 0.85 16 5 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 6 C -0.15 -1.31 9.06 37.16 0.34 -0.98 16 7 N -0.68 -7.76 6.48 -106.59 -0.69 -8.45 16 8 C 0.06 0.75 6.72 -3.77 -0.03 0.73 16 9 C 0.01 0.17 5.03 -3.77 -0.02 0.15 16 10 N -0.51 -7.77 4.61 -226.49 -1.04 -8.81 16 11 C 0.06 0.95 4.73 -3.82 -0.02 0.93 16 12 C 0.07 1.27 6.00 37.15 0.22 1.50 16 13 O -0.38 -9.43 10.27 -35.23 -0.36 -9.79 16 14 C 0.19 5.46 5.69 36.01 0.20 5.67 16 15 C -0.51 -15.34 9.43 -34.44 -0.32 -15.67 16 16 H 0.07 2.03 7.81 -52.48 -0.41 1.62 16 17 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 19 Si 0.91 22.26 29.54 -169.99 -5.02 17.24 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H 0.05 0.54 5.10 -51.93 -0.26 0.28 16 24 H 0.06 0.59 6.71 -51.93 -0.35 0.24 16 25 H 0.06 0.56 6.40 -51.93 -0.33 0.22 16 26 H 0.05 0.44 6.39 -51.93 -0.33 0.11 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.33 3.33 7.18 -39.29 -0.28 3.05 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.08 1.29 6.25 -51.93 -0.32 0.97 16 33 H 0.03 0.35 6.35 -51.93 -0.33 0.02 16 34 H 0.08 1.25 8.03 -51.93 -0.42 0.84 16 35 H 0.04 0.50 6.91 -51.93 -0.36 0.14 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.04 0.65 6.28 -51.93 -0.33 0.33 16 38 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 39 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 LS Contribution 305.83 15.07 4.61 4.61 Total: -1.00 -31.63 305.83 -8.23 -39.86 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -6.66 Total: -1.48 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: 0.20 Total: -6.51 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: -1.00 Total: -43.94 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: -0.36 Total: -9.79 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.63 -8.23 -39.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379466267.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.922 kcal (2) G-P(sol) polarization free energy of solvation -31.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds