Wall clock time and date at job start Mon Mar 30 2020 04:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.48846 * 2 1 4 4 C 1.53053 * 109.49085 * 239.95458 * 2 1 3 5 5 H 1.08998 * 109.48872 * 178.46199 * 4 2 1 6 6 C 1.52996 * 109.48666 * 58.39592 * 4 2 1 7 7 N 1.46955 * 109.36242 * 298.43373 * 4 2 1 8 8 C 1.46955 * 110.87898 * 300.67842 * 7 4 2 9 9 C 1.53051 * 109.36721 * 59.32001 * 8 7 4 10 10 N 1.46955 * 109.36422 * 301.59858 * 9 8 7 11 11 C 1.46904 * 110.99824 * 183.18558 * 10 9 8 12 12 C 1.52993 * 109.46913 * 66.20449 * 11 10 9 13 13 O 1.42894 * 109.47380 * 64.99850 * 12 11 10 14 14 C 1.42904 * 113.99996 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47094 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99834 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00093 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00073 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00147 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47346 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47320 * 120.00132 * 19 17 15 22 22 H 1.48498 * 109.47664 * 240.00203 * 19 17 15 23 23 H 1.09003 * 109.46841 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47270 * 300.04460 * 1 2 3 25 25 H 1.09000 * 109.47442 * 60.04546 * 1 2 3 26 26 H 1.08999 * 109.47641 * 300.11504 * 6 4 2 27 27 H 1.09004 * 109.47072 * 60.11850 * 6 4 2 28 28 H 1.09005 * 109.46868 * 180.10759 * 6 4 2 29 29 H 1.00901 * 111.00068 * 64.54233 * 7 4 2 30 30 H 1.09000 * 109.49195 * 179.29379 * 8 7 4 31 31 H 1.09005 * 109.48958 * 299.35094 * 8 7 4 32 32 H 1.09001 * 109.49043 * 181.63362 * 9 8 7 33 33 H 1.09001 * 109.50363 * 61.57960 * 9 8 7 34 34 H 1.09004 * 109.46751 * 186.20572 * 11 10 9 35 35 H 1.09001 * 109.47101 * 306.19961 * 11 10 9 36 36 H 1.09001 * 109.46789 * 185.00070 * 12 11 10 37 37 H 1.09001 * 109.47177 * 304.99384 * 12 11 10 38 38 H 1.09003 * 109.47207 * 299.99994 * 14 13 12 39 39 H 1.09007 * 109.46996 * 60.00244 * 14 13 12 40 40 H 0.96994 * 120.00210 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7224 -1.2490 5 1 3.1303 -0.6986 -1.2628 6 6 1.4984 -0.0262 -2.4988 7 7 1.5809 -2.1180 -1.2268 8 6 2.0712 -2.8120 -0.0278 9 6 1.5606 -2.0896 1.2212 10 7 2.0204 -0.6939 1.1990 11 6 1.6135 0.0138 2.4203 12 6 2.3418 -0.5867 3.6243 13 8 3.7452 -0.3488 3.4994 14 6 4.5218 -0.8719 4.5789 15 6 5.9786 -0.5659 4.3441 16 1 6.2811 -0.0256 3.4593 17 6 6.9252 -0.9747 5.2595 18 7 6.5568 -1.6322 6.3373 19 14 8.7309 -0.5948 4.9689 20 1 8.8809 0.1503 3.6931 21 1 9.2492 0.2321 6.0883 22 1 9.4982 -1.8640 4.8945 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5145 0.8896 25 1 -0.3634 0.5131 -0.8904 26 1 0.4088 -0.0494 -2.4838 27 1 1.8396 1.0089 -2.5150 28 1 1.8607 -0.5421 -3.3881 29 1 0.5750 -2.1684 -1.2877 30 1 1.7074 -3.8394 -0.0279 31 1 3.1612 -2.8120 -0.0278 32 1 1.9469 -2.5855 2.1117 33 1 0.4710 -2.1134 1.2355 34 1 1.8690 1.0697 2.3306 35 1 0.5371 -0.0890 2.5583 36 1 1.9746 -0.1224 4.5396 37 1 2.1571 -1.6603 3.6623 38 1 4.1999 -0.4131 5.5138 39 1 4.3825 -1.9515 4.6370 40 1 7.2227 -1.9202 6.9810 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379466267.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:54 Heat of formation + Delta-G solvation = -65.968685 kcal Electronic energy + Delta-G solvation = -18324.118917 eV Core-core repulsion = 15558.725564 eV Total energy + Delta-G solvation = -2765.393353 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.06310 -38.56150 -35.90357 -34.81791 -33.83386 -31.09191 -29.29212 -28.69226 -27.70156 -24.95859 -24.41595 -23.85478 -21.90468 -20.06792 -18.63362 -17.64379 -17.39785 -16.63693 -16.45181 -16.04263 -15.98109 -15.87631 -15.27610 -14.93350 -14.62806 -13.88320 -13.73786 -13.55600 -13.48462 -13.01744 -12.91342 -12.78348 -12.61541 -12.54907 -12.43474 -12.35947 -12.03221 -11.78355 -11.66931 -11.50628 -11.24420 -10.86773 -10.20068 -9.47478 -9.04366 -8.32900 -6.44895 1.38868 1.40490 1.55477 2.34537 2.82426 3.00746 3.20903 3.28032 3.85474 3.95143 4.05828 4.12885 4.19477 4.26192 4.33869 4.39522 4.46849 4.52863 4.55851 4.61932 4.73610 4.79821 4.86098 4.92065 4.94707 5.00986 5.06962 5.15190 5.16957 5.31319 5.37709 5.54744 5.96178 5.98473 6.08817 6.24099 6.53286 6.55771 6.84909 7.27510 8.79836 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.031602 B = 0.005000 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.820556 B = 5598.984752 C = 5885.607537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.048 3.952 3 H 0.078 0.922 4 C 0.091 3.909 5 H 0.061 0.939 6 C -0.137 4.137 7 N -0.677 5.677 8 C 0.065 3.935 9 C 0.017 3.983 10 N -0.543 5.543 11 C 0.072 3.928 12 C 0.057 3.943 13 O -0.395 6.395 14 C 0.210 3.790 15 C -0.545 4.545 16 H 0.058 0.942 17 C 0.007 3.993 18 N -0.931 5.931 19 Si 0.983 3.017 20 H -0.266 1.266 21 H -0.270 1.270 22 H -0.270 1.270 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.345 0.655 30 H 0.096 0.904 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.045 0.955 37 H 0.037 0.963 38 H -0.017 1.017 39 H -0.019 1.019 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.513 1.480 -14.472 20.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.062 4.062 3 H 0.096 0.904 4 C -0.019 4.019 5 H 0.079 0.921 6 C -0.195 4.195 7 N -0.307 5.307 8 C -0.065 4.065 9 C -0.113 4.113 10 N -0.268 5.268 11 C -0.056 4.056 12 C -0.020 4.020 13 O -0.314 6.314 14 C 0.135 3.865 15 C -0.582 4.582 16 H 0.076 0.924 17 C -0.191 4.191 18 N -0.571 5.571 19 Si 0.806 3.194 20 H -0.190 1.190 21 H -0.195 1.195 22 H -0.196 1.196 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.103 0.897 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.165 0.835 30 H 0.114 0.886 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.001 0.999 39 H -0.001 1.001 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.340 1.254 -14.904 20.042 hybrid contribution -0.569 0.229 1.598 1.712 sum -13.908 1.483 -13.306 19.306 Atomic orbital electron populations 1.22445 0.95827 1.02352 1.03360 1.22481 0.94274 0.98660 0.90819 0.90368 1.21584 0.99452 0.87320 0.93571 0.92103 1.21796 1.01718 1.00150 0.95799 1.60817 1.16924 1.14096 1.38900 1.21998 1.00336 0.97686 0.86515 1.22851 0.98114 0.89716 1.00581 1.62118 1.60501 1.02199 1.01949 1.22025 0.96674 0.98457 0.88424 1.22604 0.82997 0.98757 0.97651 1.87906 1.17124 1.79475 1.46914 1.19785 0.90682 0.91417 0.84636 1.21390 0.91704 1.37351 1.07799 0.92358 1.25952 1.04846 0.94217 0.94124 1.70074 1.36294 1.38976 1.11744 0.85140 0.77216 0.78444 0.78621 1.19002 1.19460 1.19556 0.92268 0.92531 0.89701 0.91033 0.91382 0.91707 0.83550 0.88560 0.92522 0.92112 0.93224 0.90611 0.91388 0.93669 0.94499 0.99893 1.00131 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.09 7.82 71.98 0.56 -2.52 16 2 C 0.05 1.11 2.50 44.92 0.11 1.22 16 3 H 0.08 1.93 8.07 -2.39 -0.02 1.91 16 4 C 0.09 2.03 2.95 44.92 0.13 2.17 16 5 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 6 C -0.14 -2.17 9.06 71.98 0.65 -1.52 16 7 N -0.68 -14.43 6.48 -491.14 -3.18 -17.62 16 8 C 0.06 1.60 6.72 86.31 0.58 2.18 16 9 C 0.02 0.45 5.03 86.31 0.43 0.88 16 10 N -0.54 -16.34 4.61 -870.47 -4.01 -20.35 16 11 C 0.07 2.18 4.73 86.30 0.41 2.59 16 12 C 0.06 2.22 6.00 71.98 0.43 2.65 16 13 O -0.39 -20.31 10.27 -148.98 -1.53 -21.84 16 14 C 0.21 12.31 5.69 71.24 0.41 12.71 16 15 C -0.54 -33.71 9.43 25.60 0.24 -33.47 16 16 H 0.06 3.62 7.81 -2.91 -0.02 3.59 16 17 C 0.01 0.41 5.46 84.65 0.46 0.87 16 18 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 19 Si 0.98 45.60 29.54 68.60 2.03 47.63 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 H 0.06 0.97 5.10 -2.39 -0.01 0.95 16 24 H 0.06 0.99 6.71 -2.39 -0.02 0.98 16 25 H 0.08 1.13 6.40 -2.39 -0.02 1.12 16 26 H 0.07 0.91 6.39 -2.39 -0.02 0.89 16 27 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 28 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.35 5.97 7.18 -89.69 -0.64 5.32 16 30 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.06 1.90 6.25 -2.39 -0.01 1.88 16 33 H 0.05 1.11 6.35 -2.39 -0.02 1.10 16 34 H 0.08 2.34 8.03 -2.39 -0.02 2.32 16 35 H 0.07 1.66 6.91 -2.39 -0.02 1.64 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.04 1.42 6.28 -2.39 -0.01 1.40 16 38 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 39 H -0.02 -1.17 8.14 -2.38 -0.02 -1.19 16 40 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -69.07 305.83 -1.62 -70.69 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 0.37 Total: 10.65 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: 4.42 Total: -12.25 kcal Atomic # 7 Polarization: -87.98 SS G_CDS: -6.91 Total: -94.89 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -1.53 Total: -21.84 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -69.07 -1.62 -70.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379466267.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.724 kcal (2) G-P(sol) polarization free energy of solvation -69.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds