Wall clock time and date at job start Mon Mar 30 2020 05:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46919 * 2 1 4 4 O 1.42905 * 109.47153 * 240.00303 * 2 1 3 5 5 C 1.52995 * 109.46975 * 120.00216 * 2 1 3 6 6 N 1.46899 * 109.47287 * 180.49561 * 5 2 1 7 7 C 1.46843 * 111.00378 * 200.06299 * 6 5 2 8 8 C 1.53038 * 109.52230 * 174.16303 * 7 6 5 9 9 C 1.53112 * 109.28364 * 59.18055 * 8 7 6 10 10 C 1.52997 * 109.52783 * 182.44285 * 9 8 7 11 11 N 1.46508 * 109.46791 * 294.68194 * 10 9 8 12 12 C 1.36931 * 119.99887 * 180.02562 * 11 10 9 13 13 H 1.08007 * 120.00125 * 0.02562 * 12 11 10 14 14 C 1.38811 * 119.99847 * 179.97438 * 12 11 10 15 15 N 1.31619 * 120.00092 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99923 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46892 * 60.00705 * 16 14 12 18 18 H 1.48504 * 109.46964 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47119 * 300.00292 * 16 14 12 20 20 C 1.53126 * 109.15619 * 302.34800 * 9 8 7 21 21 C 1.46854 * 110.99699 * 75.85068 * 6 5 2 22 22 H 1.09002 * 109.46676 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.46997 * 299.99854 * 1 2 3 24 24 H 1.09005 * 109.46788 * 60.00368 * 1 2 3 25 25 H 0.96703 * 113.99654 * 59.99671 * 4 2 1 26 26 H 1.09000 * 109.47123 * 300.49856 * 5 2 1 27 27 H 1.09005 * 109.47419 * 60.49767 * 5 2 1 28 28 H 1.08992 * 109.46256 * 294.17712 * 7 6 5 29 29 H 1.08998 * 109.46147 * 54.14876 * 7 6 5 30 30 H 1.08999 * 109.50205 * 299.23166 * 8 7 6 31 31 H 1.09007 * 109.49985 * 179.12092 * 8 7 6 32 32 H 1.09002 * 109.57380 * 62.27525 * 9 8 7 33 33 H 1.08998 * 109.47446 * 54.67697 * 10 9 8 34 34 H 1.08998 * 109.47536 * 174.68502 * 10 9 8 35 35 H 0.96996 * 119.99880 * 359.97438 * 11 10 9 36 36 H 0.97004 * 119.99695 * 179.97438 * 15 14 12 37 37 H 1.08998 * 109.50370 * 297.70549 * 20 9 8 38 38 H 1.09002 * 109.53382 * 177.61250 * 20 9 8 39 39 H 1.08994 * 109.46599 * 305.86031 * 21 6 5 40 40 H 1.08998 * 109.46173 * 65.83743 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2492 6 7 3.5090 -0.7110 1.2553 7 6 4.0390 -1.7609 2.1344 8 6 5.5629 -1.8157 2.0043 9 6 6.1524 -0.4561 2.3893 10 6 7.6707 -0.4857 2.2030 11 7 8.2602 -1.4373 3.1482 12 6 9.6152 -1.6337 3.1667 13 1 10.2495 -1.0868 2.4847 14 6 10.1737 -2.5349 4.0626 15 7 9.4008 -3.2010 4.8940 16 14 12.0222 -2.8034 4.0873 17 1 12.7045 -1.5211 4.3961 18 1 12.3625 -3.8085 5.1262 19 1 12.4688 -3.2945 2.7590 20 6 5.5477 0.6264 1.4908 21 6 4.0243 0.6105 1.6357 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.7210 -0.2700 -1.9980 26 1 1.6694 -0.2127 2.1392 27 1 1.6840 -1.7515 1.2447 28 1 3.7705 -1.5396 3.1673 29 1 3.6152 -2.7232 1.8472 30 1 5.8320 -2.0507 0.9746 31 1 5.9574 -2.5846 2.6687 32 1 5.9174 -0.2378 3.4310 33 1 7.9059 -0.7930 1.1840 34 1 8.0788 0.5083 2.3861 35 1 7.6906 -1.9276 3.7614 36 1 9.7911 -3.8311 5.5199 37 1 5.8166 0.4300 0.4529 38 1 5.9312 1.6026 1.7875 39 1 3.5898 1.3705 0.9865 40 1 3.7559 0.8207 2.6710 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379917455.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:49 Heat of formation + Delta-G solvation = -50.364496 kcal Electronic energy + Delta-G solvation = -17914.442364 eV Core-core repulsion = 15149.725659 eV Total energy + Delta-G solvation = -2764.716705 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.21010 -37.35348 -35.13409 -33.10410 -31.38682 -30.65380 -30.02833 -27.03811 -24.79912 -23.35413 -22.49795 -21.31483 -20.59632 -19.30579 -17.44711 -17.04193 -15.97865 -15.14468 -14.68571 -14.50968 -14.27640 -14.04017 -13.61783 -13.44295 -13.20208 -12.74063 -12.58482 -12.43272 -12.21544 -11.88998 -11.66320 -11.45948 -11.06717 -10.89473 -10.76900 -10.74716 -10.18164 -10.12829 -10.06971 -9.93323 -9.74028 -9.48822 -8.78876 -8.14653 -6.82773 -5.69436 -2.96966 3.48950 3.52719 3.54132 3.89286 4.13278 4.65601 4.72665 4.88826 4.94783 5.11369 5.12820 5.25331 5.30581 5.45112 5.52031 5.55542 5.64780 5.68767 5.71426 5.74511 5.86188 5.89560 6.02007 6.08039 6.23385 6.29659 6.40371 6.51103 6.65670 6.80416 6.91856 7.05984 7.23303 7.27356 7.62487 7.76459 8.50219 9.60880 10.20879 10.55757 11.53732 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.059718 B = 0.004024 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.759776 B = 6957.049252 C = 7088.120120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.107 3.893 3 H 0.052 0.948 4 O -0.548 6.548 5 C 0.060 3.940 6 N -0.527 5.527 7 C 0.058 3.942 8 C -0.105 4.105 9 C -0.094 4.094 10 C 0.159 3.841 11 N -0.732 5.732 12 C -0.236 4.236 13 H 0.069 0.931 14 C -0.016 4.016 15 N -0.936 5.936 16 Si 0.907 3.093 17 H -0.287 1.287 18 H -0.292 1.292 19 H -0.286 1.286 20 C -0.107 4.107 21 C 0.058 3.942 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.368 0.632 26 H 0.045 0.955 27 H 0.077 0.923 28 H 0.029 0.971 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.019 0.981 34 H 0.016 0.984 35 H 0.383 0.617 36 H 0.255 0.745 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.406 7.880 -8.833 21.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.048 3.952 3 H 0.070 0.930 4 O -0.352 6.352 5 C -0.068 4.068 6 N -0.252 5.252 7 C -0.069 4.069 8 C -0.143 4.143 9 C -0.113 4.113 10 C 0.031 3.969 11 N -0.376 5.376 12 C -0.368 4.368 13 H 0.087 0.913 14 C -0.212 4.212 15 N -0.585 5.585 16 Si 0.738 3.262 17 H -0.214 1.214 18 H -0.217 1.217 19 H -0.213 1.213 20 C -0.146 4.146 21 C -0.070 4.070 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.214 0.786 26 H 0.063 0.937 27 H 0.096 0.904 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.037 0.963 34 H 0.034 0.966 35 H 0.217 0.783 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -17.783 7.390 -8.873 21.203 hybrid contribution 0.229 0.242 0.734 0.806 sum -17.555 7.632 -8.139 20.800 Atomic orbital electron populations 1.22522 0.96802 1.02832 1.02320 1.21761 0.91569 0.95296 0.86615 0.93043 1.86694 1.76804 1.56658 1.15073 1.22114 0.88744 1.01244 0.94730 1.61836 1.05944 1.04431 1.52949 1.22152 0.96791 0.94329 0.93647 1.21566 0.92347 0.97729 1.02634 1.21347 0.96382 0.94715 0.98865 1.20670 0.89652 0.93070 0.93490 1.42382 1.04939 1.48316 1.41999 1.19216 0.83777 1.18669 1.15122 0.91317 1.24725 0.97743 0.99731 0.98971 1.69653 1.33788 1.30387 1.24653 0.86264 0.85490 0.77370 0.77061 1.21360 1.21744 1.21305 1.21560 0.93313 0.98710 1.00979 1.22122 0.96374 0.90546 0.97964 0.91746 0.91780 0.92281 0.78607 0.93657 0.90407 0.95311 0.91130 0.91336 0.90532 0.91780 0.96289 0.96635 0.78308 0.93569 0.91107 0.91811 0.91466 0.95333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.31 9.53 37.16 0.35 -0.96 16 2 C 0.11 1.02 3.64 -26.73 -0.10 0.92 16 3 H 0.05 0.47 6.83 -51.93 -0.35 0.12 16 4 O -0.55 -6.04 13.19 -35.23 -0.46 -6.50 16 5 C 0.06 0.67 4.69 -3.83 -0.02 0.65 16 6 N -0.53 -7.17 4.46 -234.68 -1.05 -8.21 16 7 C 0.06 0.85 5.43 -3.84 -0.02 0.83 16 8 C -0.10 -1.81 5.22 -26.65 -0.14 -1.95 16 9 C -0.09 -1.64 2.29 -90.50 -0.21 -1.85 16 10 C 0.16 3.39 5.65 -4.04 -0.02 3.37 16 11 N -0.73 -19.31 5.36 -59.91 -0.32 -19.63 16 12 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 13 H 0.07 1.94 7.83 -52.48 -0.41 1.52 16 14 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 15 N -0.94 -28.96 13.06 55.49 0.72 -28.24 16 16 Si 0.91 22.98 29.55 -169.99 -5.02 17.96 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 18 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 C -0.11 -1.55 5.38 -26.65 -0.14 -1.70 16 21 C 0.06 0.74 5.29 -3.83 -0.02 0.72 16 22 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.37 2.44 9.08 45.56 0.41 2.85 16 26 H 0.05 0.45 8.00 -51.93 -0.42 0.04 16 27 H 0.08 0.88 7.79 -51.93 -0.40 0.48 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.99 7.93 -51.93 -0.41 0.58 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.08 1.48 7.27 -51.93 -0.38 1.10 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.38 10.52 6.89 -40.82 -0.28 10.24 16 36 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.76 6.72 -51.93 -0.35 0.41 16 40 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 315.76 15.07 4.76 4.76 Total: -1.00 -32.52 315.76 -8.31 -40.83 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -6.38 Total: 6.59 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -0.56 Total: -7.55 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: -0.64 Total: -56.08 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -0.46 Total: -6.50 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.52 -8.31 -40.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379917455.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.533 kcal (2) G-P(sol) polarization free energy of solvation -32.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds