Wall clock time and date at job start Mon Mar 30 2020 05:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46919 * 2 1 4 4 O 1.42905 * 109.47153 * 240.00303 * 2 1 3 5 5 C 1.52995 * 109.46975 * 120.00216 * 2 1 3 6 6 N 1.46899 * 109.47287 * 180.49561 * 5 2 1 7 7 C 1.46843 * 111.00378 * 200.06299 * 6 5 2 8 8 C 1.53038 * 109.52230 * 174.16303 * 7 6 5 9 9 C 1.53112 * 109.28364 * 59.18055 * 8 7 6 10 10 C 1.52997 * 109.52783 * 182.44285 * 9 8 7 11 11 N 1.46508 * 109.46791 * 294.68194 * 10 9 8 12 12 C 1.36931 * 119.99887 * 180.02562 * 11 10 9 13 13 H 1.08007 * 120.00125 * 0.02562 * 12 11 10 14 14 C 1.38811 * 119.99847 * 179.97438 * 12 11 10 15 15 N 1.31619 * 120.00092 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99923 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46892 * 60.00705 * 16 14 12 18 18 H 1.48504 * 109.46964 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47119 * 300.00292 * 16 14 12 20 20 C 1.53126 * 109.15619 * 302.34800 * 9 8 7 21 21 C 1.46854 * 110.99699 * 75.85068 * 6 5 2 22 22 H 1.09002 * 109.46676 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.46997 * 299.99854 * 1 2 3 24 24 H 1.09005 * 109.46788 * 60.00368 * 1 2 3 25 25 H 0.96703 * 113.99654 * 59.99671 * 4 2 1 26 26 H 1.09000 * 109.47123 * 300.49856 * 5 2 1 27 27 H 1.09005 * 109.47419 * 60.49767 * 5 2 1 28 28 H 1.08992 * 109.46256 * 294.17712 * 7 6 5 29 29 H 1.08998 * 109.46147 * 54.14876 * 7 6 5 30 30 H 1.08999 * 109.50205 * 299.23166 * 8 7 6 31 31 H 1.09007 * 109.49985 * 179.12092 * 8 7 6 32 32 H 1.09002 * 109.57380 * 62.27525 * 9 8 7 33 33 H 1.08998 * 109.47446 * 54.67697 * 10 9 8 34 34 H 1.08998 * 109.47536 * 174.68502 * 10 9 8 35 35 H 0.96996 * 119.99880 * 359.97438 * 11 10 9 36 36 H 0.97004 * 119.99695 * 179.97438 * 15 14 12 37 37 H 1.08998 * 109.50370 * 297.70549 * 20 9 8 38 38 H 1.09002 * 109.53382 * 177.61250 * 20 9 8 39 39 H 1.08994 * 109.46599 * 305.86031 * 21 6 5 40 40 H 1.08998 * 109.46173 * 65.83743 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2492 6 7 3.5090 -0.7110 1.2553 7 6 4.0390 -1.7609 2.1344 8 6 5.5629 -1.8157 2.0043 9 6 6.1524 -0.4561 2.3893 10 6 7.6707 -0.4857 2.2030 11 7 8.2602 -1.4373 3.1482 12 6 9.6152 -1.6337 3.1667 13 1 10.2495 -1.0868 2.4847 14 6 10.1737 -2.5349 4.0626 15 7 9.4008 -3.2010 4.8940 16 14 12.0222 -2.8034 4.0873 17 1 12.7045 -1.5211 4.3961 18 1 12.3625 -3.8085 5.1262 19 1 12.4688 -3.2945 2.7590 20 6 5.5477 0.6264 1.4908 21 6 4.0243 0.6105 1.6357 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.7210 -0.2700 -1.9980 26 1 1.6694 -0.2127 2.1392 27 1 1.6840 -1.7515 1.2447 28 1 3.7705 -1.5396 3.1673 29 1 3.6152 -2.7232 1.8472 30 1 5.8320 -2.0507 0.9746 31 1 5.9574 -2.5846 2.6687 32 1 5.9174 -0.2378 3.4310 33 1 7.9059 -0.7930 1.1840 34 1 8.0788 0.5083 2.3861 35 1 7.6906 -1.9276 3.7614 36 1 9.7911 -3.8311 5.5199 37 1 5.8166 0.4300 0.4529 38 1 5.9312 1.6026 1.7875 39 1 3.5898 1.3705 0.9865 40 1 3.7559 0.8207 2.6710 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379917455.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:48 Heat of formation + Delta-G solvation = -74.972032 kcal Electronic energy + Delta-G solvation = -17915.509427 eV Core-core repulsion = 15149.725659 eV Total energy + Delta-G solvation = -2765.783768 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = -0.62 seconds Orbital eigenvalues (eV) -40.33223 -38.29496 -36.72155 -34.74651 -32.72998 -31.91144 -31.41111 -28.39008 -26.23381 -24.87071 -23.89094 -22.58320 -21.62913 -20.65541 -19.15872 -18.18847 -17.06063 -16.68633 -16.07316 -15.67452 -15.54372 -15.31625 -15.18743 -14.97646 -14.36727 -14.05638 -13.82024 -13.39545 -13.26725 -13.12014 -12.98423 -12.72456 -12.64032 -12.54983 -12.19654 -12.11567 -11.96194 -11.69151 -11.53519 -11.23728 -11.01746 -10.90039 -10.74247 -9.17274 -8.99380 -7.95055 -5.23903 1.46313 1.50231 1.56300 2.56243 2.91477 3.37810 3.45477 3.79521 3.86559 3.88729 4.08812 4.22633 4.27106 4.29921 4.34736 4.48463 4.50204 4.56490 4.66920 4.71714 4.78481 4.90014 4.91924 4.99294 5.04069 5.05228 5.11383 5.15605 5.26824 5.31876 5.38818 5.47623 5.57219 6.16748 6.23822 6.27367 7.07251 7.33149 8.09707 8.34119 9.28504 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.059718 B = 0.004024 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.759776 B = 6957.049252 C = 7088.120120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.108 3.892 3 H 0.058 0.942 4 O -0.575 6.575 5 C 0.056 3.944 6 N -0.539 5.539 7 C 0.066 3.934 8 C -0.099 4.099 9 C -0.084 4.084 10 C 0.158 3.842 11 N -0.744 5.744 12 C -0.250 4.250 13 H 0.074 0.926 14 C -0.076 4.076 15 N -0.970 5.970 16 Si 0.976 3.024 17 H -0.277 1.277 18 H -0.293 1.293 19 H -0.278 1.278 20 C -0.100 4.100 21 C 0.061 3.939 22 H 0.057 0.943 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.385 0.615 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.031 0.969 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.015 0.985 34 H 0.019 0.981 35 H 0.374 0.626 36 H 0.252 0.748 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.244 9.236 -9.640 23.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.049 3.951 3 H 0.076 0.924 4 O -0.382 6.382 5 C -0.072 4.072 6 N -0.264 5.264 7 C -0.061 4.061 8 C -0.137 4.137 9 C -0.103 4.103 10 C 0.032 3.968 11 N -0.387 5.387 12 C -0.381 4.381 13 H 0.092 0.908 14 C -0.268 4.268 15 N -0.621 5.621 16 Si 0.805 3.195 17 H -0.203 1.203 18 H -0.220 1.220 19 H -0.204 1.204 20 C -0.139 4.139 21 C -0.066 4.066 22 H 0.076 0.924 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.234 0.766 26 H 0.078 0.922 27 H 0.090 0.910 28 H 0.049 0.951 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.033 0.967 34 H 0.037 0.963 35 H 0.206 0.794 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -18.641 8.785 -9.723 22.786 hybrid contribution 0.460 -0.155 0.929 1.048 sum -18.181 8.630 -8.794 21.962 Atomic orbital electron populations 1.22444 0.94886 1.02813 1.03577 1.21792 0.92978 0.94960 0.85414 0.92397 1.86639 1.77486 1.57684 1.16422 1.22244 0.86987 1.01536 0.96437 1.61828 1.07714 1.04329 1.52547 1.21988 0.94621 0.95334 0.94191 1.21433 0.94534 0.96781 1.00930 1.21241 0.93750 0.96068 0.99265 1.20823 0.92227 0.91810 0.91985 1.42587 1.04313 1.49130 1.42677 1.19636 0.85133 1.18451 1.14919 0.90836 1.25598 1.02481 0.99827 0.98930 1.69819 1.35660 1.31139 1.25470 0.85172 0.79884 0.77364 0.77099 1.20281 1.21953 1.20412 1.21507 0.94665 0.97990 0.99694 1.22121 0.94906 0.90771 0.98841 0.92391 0.90790 0.90779 0.76621 0.92218 0.91008 0.95069 0.90793 0.92566 0.93447 0.92506 0.96733 0.96312 0.79405 0.93959 0.91605 0.90362 0.89217 0.94857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.04 9.53 71.98 0.69 -1.35 16 2 C 0.11 1.78 3.64 30.60 0.11 1.89 16 3 H 0.06 0.88 6.83 -2.39 -0.02 0.86 16 4 O -0.58 -11.59 13.19 -148.98 -1.97 -13.55 16 5 C 0.06 1.13 4.69 86.30 0.41 1.53 16 6 N -0.54 -13.80 4.46 -896.39 -4.00 -17.79 16 7 C 0.07 1.92 5.43 86.33 0.47 2.39 16 8 C -0.10 -3.47 5.22 30.64 0.16 -3.31 16 9 C -0.08 -2.93 2.29 -10.72 -0.02 -2.96 16 10 C 0.16 6.80 5.65 86.38 0.49 7.29 16 11 N -0.74 -40.04 5.36 -343.44 -1.84 -41.88 16 12 C -0.25 -14.61 9.99 84.03 0.84 -13.77 16 13 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 14 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 15 N -0.97 -61.07 13.06 21.65 0.28 -60.78 16 16 Si 0.98 47.41 29.55 68.60 2.03 49.43 16 17 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 18 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 19 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 20 C -0.10 -2.74 5.38 30.65 0.16 -2.58 16 21 C 0.06 1.43 5.29 86.32 0.46 1.88 16 22 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 23 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 25 H 0.39 4.34 9.08 -74.06 -0.67 3.67 16 26 H 0.06 1.04 8.00 -2.39 -0.02 1.02 16 27 H 0.07 1.53 7.79 -2.38 -0.02 1.51 16 28 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 2.06 7.93 -2.39 -0.02 2.04 16 30 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.05 1.91 7.27 -2.38 -0.02 1.90 16 32 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.37 21.22 6.89 -92.71 -0.64 20.58 16 36 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 37 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.09 1.73 6.72 -2.39 -0.02 1.71 16 40 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -69.25 315.76 -1.57 -70.82 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: -0.30 Total: 26.81 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: 4.22 Total: -13.06 kcal Atomic # 7 Polarization: -114.91 SS G_CDS: -5.55 Total: -120.46 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -1.97 Total: -13.55 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.43 kcal Total: -69.25 -1.57 -70.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379917455.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.148 kcal (2) G-P(sol) polarization free energy of solvation -69.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.61 seconds