Wall clock time and date at job start Mon Mar 30 2020 05:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.47093 * 2 1 4 4 O 1.42892 * 109.47129 * 120.00292 * 2 1 3 5 5 C 1.52994 * 109.47085 * 240.00344 * 2 1 3 6 6 N 1.46902 * 109.47466 * 180.02562 * 5 2 1 7 7 C 1.46846 * 110.99617 * 294.20987 * 6 5 2 8 8 C 1.53040 * 109.51964 * 174.15808 * 7 6 5 9 9 C 1.53119 * 109.28089 * 59.17912 * 8 7 6 10 10 C 1.52993 * 109.52330 * 182.43958 * 9 8 7 11 11 N 1.46500 * 109.47361 * 294.68343 * 10 9 8 12 12 C 1.36941 * 120.00288 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99916 * 359.97438 * 12 11 10 14 14 C 1.38811 * 120.00046 * 180.02562 * 12 11 10 15 15 N 1.31621 * 119.99968 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99908 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47232 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47335 * 119.99841 * 16 14 12 19 19 H 1.48502 * 109.47345 * 239.99834 * 16 14 12 20 20 C 1.53124 * 109.15841 * 302.34776 * 9 8 7 21 21 C 1.46846 * 111.00204 * 169.99882 * 6 5 2 22 22 H 1.09002 * 109.47093 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.46845 * 299.99850 * 1 2 3 24 24 H 1.09002 * 109.47027 * 59.99678 * 1 2 3 25 25 H 0.96708 * 114.00434 * 59.99828 * 4 2 1 26 26 H 1.08997 * 109.47222 * 59.99601 * 5 2 1 27 27 H 1.09002 * 109.46934 * 300.00343 * 5 2 1 28 28 H 1.08996 * 109.46231 * 294.17554 * 7 6 5 29 29 H 1.09004 * 109.46418 * 54.14394 * 7 6 5 30 30 H 1.09004 * 109.50602 * 299.23671 * 8 7 6 31 31 H 1.09001 * 109.53370 * 179.14510 * 8 7 6 32 32 H 1.09003 * 109.56984 * 62.28008 * 9 8 7 33 33 H 1.09007 * 109.47317 * 54.68551 * 10 9 8 34 34 H 1.09000 * 109.47026 * 174.68099 * 10 9 8 35 35 H 0.97006 * 119.99803 * 0.02562 * 11 10 9 36 36 H 0.97002 * 119.99866 * 179.97438 * 15 14 12 37 37 H 1.08999 * 109.49853 * 297.70868 * 20 9 8 38 38 H 1.08994 * 109.53481 * 177.61659 * 20 9 8 39 39 H 1.09001 * 109.45990 * 305.85570 * 21 6 5 40 40 H 1.08999 * 109.46398 * 65.83493 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0400 -0.7211 -1.2492 6 7 3.5090 -0.7217 -1.2490 7 6 4.0358 0.6421 -1.3870 8 6 5.5586 0.6197 -1.2370 9 6 6.1592 -0.2906 -2.3118 10 6 7.6764 -0.3652 -2.1292 11 7 8.2635 0.9540 -2.3765 12 6 9.6173 1.1316 -2.2717 13 1 10.2522 0.2991 -2.0063 14 6 10.1735 2.3817 -2.5055 15 7 9.3997 3.3963 -2.8284 16 14 12.0201 2.6240 -2.3619 17 1 12.6606 1.3373 -1.9888 18 1 12.5614 3.0875 -3.6647 19 1 12.3063 3.6401 -1.3173 20 6 5.5579 -1.6923 -2.1765 21 6 4.0352 -1.6029 -2.2993 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8900 25 1 1.7210 -1.5953 1.2328 26 1 1.6767 -0.2073 -2.1392 27 1 1.6766 -1.7488 -1.2493 28 1 3.7733 1.0351 -2.3691 29 1 3.6040 1.2781 -0.6141 30 1 5.8216 0.2396 -0.2497 31 1 5.9513 1.6297 -1.3544 32 1 5.9304 0.1102 -3.2992 33 1 7.9048 -0.6795 -1.1107 34 1 8.0921 -1.0858 -2.8336 35 1 7.6932 1.7018 -2.6145 36 1 9.7884 4.2700 -2.9914 37 1 5.8208 -2.1087 -1.2041 38 1 5.9495 -2.3346 -2.9652 39 1 3.6029 -2.5975 -2.1891 40 1 3.7729 -1.1993 -3.2772 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379917456.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:55 Heat of formation + Delta-G solvation = -51.584365 kcal Electronic energy + Delta-G solvation = -17978.312757 eV Core-core repulsion = 15213.543154 eV Total energy + Delta-G solvation = -2764.769603 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.32129 -37.39609 -35.09474 -33.06132 -31.34795 -30.58231 -30.12690 -27.04310 -24.78516 -23.16726 -22.94577 -21.32991 -20.74669 -19.34341 -17.07060 -16.65879 -16.01934 -15.50014 -14.83902 -14.63068 -14.34410 -13.99995 -13.67259 -13.44519 -13.31906 -12.73808 -12.48870 -12.43793 -12.14861 -11.88810 -11.74106 -11.44214 -10.99071 -10.90599 -10.85843 -10.78833 -10.23350 -10.12353 -10.08007 -9.96636 -9.69312 -9.51844 -8.80632 -8.20376 -6.83612 -5.70615 -2.98117 3.47331 3.52855 3.55225 3.80416 4.40045 4.56384 4.64875 4.91404 4.94857 5.09169 5.12013 5.15766 5.32947 5.37733 5.49276 5.50574 5.62677 5.64592 5.69516 5.79129 5.83785 5.89393 6.02862 6.05294 6.20797 6.27973 6.37631 6.49299 6.63508 6.79029 6.90029 7.03278 7.18014 7.21639 7.63249 7.76668 8.49007 9.59888 10.19704 10.54442 11.52698 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.043883 B = 0.004285 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.913882 B = 6532.192821 C = 6822.443199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.104 3.896 3 H 0.098 0.902 4 O -0.548 6.548 5 C 0.023 3.977 6 N -0.527 5.527 7 C 0.055 3.945 8 C -0.104 4.104 9 C -0.094 4.094 10 C 0.159 3.841 11 N -0.732 5.732 12 C -0.235 4.235 13 H 0.070 0.930 14 C -0.017 4.017 15 N -0.935 5.935 16 Si 0.906 3.094 17 H -0.281 1.281 18 H -0.292 1.292 19 H -0.292 1.292 20 C -0.108 4.108 21 C 0.059 3.941 22 H 0.057 0.943 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.370 0.630 26 H 0.038 0.962 27 H 0.073 0.927 28 H 0.028 0.972 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.019 0.981 34 H 0.016 0.984 35 H 0.383 0.617 36 H 0.253 0.747 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.415 -9.678 2.977 21.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.045 3.955 3 H 0.116 0.884 4 O -0.352 6.352 5 C -0.106 4.106 6 N -0.252 5.252 7 C -0.072 4.072 8 C -0.142 4.142 9 C -0.113 4.113 10 C 0.031 3.969 11 N -0.377 5.377 12 C -0.366 4.366 13 H 0.088 0.912 14 C -0.212 4.212 15 N -0.584 5.584 16 Si 0.738 3.262 17 H -0.206 1.206 18 H -0.220 1.220 19 H -0.219 1.219 20 C -0.146 4.146 21 C -0.069 4.069 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.216 0.784 26 H 0.056 0.944 27 H 0.092 0.908 28 H 0.047 0.953 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.037 0.963 34 H 0.034 0.966 35 H 0.217 0.783 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -17.794 -9.319 3.561 20.400 hybrid contribution 0.240 0.275 -1.077 1.137 sum -17.554 -9.044 2.485 19.903 Atomic orbital electron populations 1.22499 0.96603 1.02422 1.02756 1.21923 0.91888 0.97038 0.84689 0.88432 1.86640 1.77266 1.28444 1.42836 1.22836 0.89212 1.00907 0.97644 1.61885 1.05579 1.10421 1.47309 1.22189 0.96883 0.88777 0.99347 1.21556 0.92267 1.00858 0.99552 1.21352 0.96397 0.94736 0.98851 1.20670 0.89655 0.89199 0.97365 1.42400 1.05117 1.06134 1.84012 1.19307 0.83859 0.94637 1.38842 0.91203 1.24726 0.97767 0.95892 1.02821 1.69673 1.33634 1.00548 1.54586 0.86119 0.85461 0.77516 0.77149 1.20586 1.21962 1.21912 1.21565 0.93270 0.97417 1.02331 1.22076 0.96312 0.96380 0.92104 0.92374 0.91622 0.91746 0.78416 0.94402 0.90846 0.95342 0.90954 0.91293 0.90561 0.91800 0.96282 0.96620 0.78318 0.93670 0.91097 0.91742 0.91390 0.95325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 9.53 37.16 0.35 -0.98 16 2 C 0.10 1.01 3.46 -26.73 -0.09 0.92 16 3 H 0.10 1.06 6.43 -51.93 -0.33 0.73 16 4 O -0.55 -6.15 13.20 -35.23 -0.47 -6.62 16 5 C 0.02 0.23 4.62 -3.83 -0.02 0.21 16 6 N -0.53 -6.74 4.52 -234.68 -1.06 -7.80 16 7 C 0.06 0.79 5.29 -3.83 -0.02 0.77 16 8 C -0.10 -1.78 5.22 -26.65 -0.14 -1.92 16 9 C -0.09 -1.63 2.29 -90.50 -0.21 -1.83 16 10 C 0.16 3.36 5.65 -4.05 -0.02 3.34 16 11 N -0.73 -19.24 5.36 -59.91 -0.32 -19.56 16 12 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 13 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 14 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 15 N -0.94 -28.89 13.06 55.49 0.72 -28.17 16 16 Si 0.91 22.94 29.55 -169.99 -5.02 17.91 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 19 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 20 C -0.11 -1.51 5.38 -26.65 -0.14 -1.66 16 21 C 0.06 0.73 5.46 -3.84 -0.02 0.71 16 22 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.37 2.82 9.05 45.56 0.41 3.24 16 26 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 27 H 0.07 0.63 7.99 -51.93 -0.41 0.22 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 1.00 6.21 -51.93 -0.32 0.67 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.08 1.47 7.27 -51.93 -0.38 1.09 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.38 10.49 6.89 -40.82 -0.28 10.20 16 36 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.72 8.01 -51.93 -0.42 0.31 16 40 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 315.09 15.07 4.75 4.75 Total: -1.00 -32.09 315.09 -8.31 -40.39 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -6.35 Total: 7.07 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -0.56 Total: -7.98 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -0.66 Total: -55.53 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.47 Total: -6.62 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.09 -8.31 -40.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379917456.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.192 kcal (2) G-P(sol) polarization free energy of solvation -32.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds