Wall clock time and date at job start Mon Mar 30 2020 05:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.47093 * 2 1 4 4 O 1.42892 * 109.47129 * 120.00292 * 2 1 3 5 5 C 1.52994 * 109.47085 * 240.00344 * 2 1 3 6 6 N 1.46902 * 109.47466 * 180.02562 * 5 2 1 7 7 C 1.46846 * 110.99617 * 294.20987 * 6 5 2 8 8 C 1.53040 * 109.51964 * 174.15808 * 7 6 5 9 9 C 1.53119 * 109.28089 * 59.17912 * 8 7 6 10 10 C 1.52993 * 109.52330 * 182.43958 * 9 8 7 11 11 N 1.46500 * 109.47361 * 294.68343 * 10 9 8 12 12 C 1.36941 * 120.00288 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99916 * 359.97438 * 12 11 10 14 14 C 1.38811 * 120.00046 * 180.02562 * 12 11 10 15 15 N 1.31621 * 119.99968 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99908 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47232 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47335 * 119.99841 * 16 14 12 19 19 H 1.48502 * 109.47345 * 239.99834 * 16 14 12 20 20 C 1.53124 * 109.15841 * 302.34776 * 9 8 7 21 21 C 1.46846 * 111.00204 * 169.99882 * 6 5 2 22 22 H 1.09002 * 109.47093 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.46845 * 299.99850 * 1 2 3 24 24 H 1.09002 * 109.47027 * 59.99678 * 1 2 3 25 25 H 0.96708 * 114.00434 * 59.99828 * 4 2 1 26 26 H 1.08997 * 109.47222 * 59.99601 * 5 2 1 27 27 H 1.09002 * 109.46934 * 300.00343 * 5 2 1 28 28 H 1.08996 * 109.46231 * 294.17554 * 7 6 5 29 29 H 1.09004 * 109.46418 * 54.14394 * 7 6 5 30 30 H 1.09004 * 109.50602 * 299.23671 * 8 7 6 31 31 H 1.09001 * 109.53370 * 179.14510 * 8 7 6 32 32 H 1.09003 * 109.56984 * 62.28008 * 9 8 7 33 33 H 1.09007 * 109.47317 * 54.68551 * 10 9 8 34 34 H 1.09000 * 109.47026 * 174.68099 * 10 9 8 35 35 H 0.97006 * 119.99803 * 0.02562 * 11 10 9 36 36 H 0.97002 * 119.99866 * 179.97438 * 15 14 12 37 37 H 1.08999 * 109.49853 * 297.70868 * 20 9 8 38 38 H 1.08994 * 109.53481 * 177.61659 * 20 9 8 39 39 H 1.09001 * 109.45990 * 305.85570 * 21 6 5 40 40 H 1.08999 * 109.46398 * 65.83493 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0400 -0.7211 -1.2492 6 7 3.5090 -0.7217 -1.2490 7 6 4.0358 0.6421 -1.3870 8 6 5.5586 0.6197 -1.2370 9 6 6.1592 -0.2906 -2.3118 10 6 7.6764 -0.3652 -2.1292 11 7 8.2635 0.9540 -2.3765 12 6 9.6173 1.1316 -2.2717 13 1 10.2522 0.2991 -2.0063 14 6 10.1735 2.3817 -2.5055 15 7 9.3997 3.3963 -2.8284 16 14 12.0201 2.6240 -2.3619 17 1 12.6606 1.3373 -1.9888 18 1 12.5614 3.0875 -3.6647 19 1 12.3063 3.6401 -1.3173 20 6 5.5579 -1.6923 -2.1765 21 6 4.0352 -1.6029 -2.2993 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8900 25 1 1.7210 -1.5953 1.2328 26 1 1.6767 -0.2073 -2.1392 27 1 1.6766 -1.7488 -1.2493 28 1 3.7733 1.0351 -2.3691 29 1 3.6040 1.2781 -0.6141 30 1 5.8216 0.2396 -0.2497 31 1 5.9513 1.6297 -1.3544 32 1 5.9304 0.1102 -3.2992 33 1 7.9048 -0.6795 -1.1107 34 1 8.0921 -1.0858 -2.8336 35 1 7.6932 1.7018 -2.6145 36 1 9.7884 4.2700 -2.9914 37 1 5.8208 -2.1087 -1.2041 38 1 5.9495 -2.3346 -2.9652 39 1 3.6029 -2.5975 -2.1891 40 1 3.7729 -1.1993 -3.2772 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379917456.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:53 Heat of formation + Delta-G solvation = -75.925658 kcal Electronic energy + Delta-G solvation = -17979.368274 eV Core-core repulsion = 15213.543154 eV Total energy + Delta-G solvation = -2765.825120 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 2.92 seconds Orbital eigenvalues (eV) -40.39743 -38.38638 -36.68572 -34.69034 -32.69756 -31.75634 -31.53644 -28.39031 -26.21392 -24.65542 -24.27433 -22.49930 -21.89989 -20.66118 -19.16410 -17.55693 -16.84403 -16.69895 -16.51446 -15.78574 -15.56179 -15.27951 -15.25636 -15.13768 -14.53370 -13.97106 -13.65431 -13.57616 -13.23791 -13.08852 -12.88780 -12.79631 -12.65259 -12.48282 -12.14437 -12.05389 -11.93665 -11.73322 -11.56176 -11.19122 -11.14373 -10.92206 -10.75772 -9.18491 -8.99885 -7.95955 -5.24720 1.46295 1.47666 1.57949 2.55601 2.88855 3.37415 3.68204 3.75980 3.84287 3.89057 3.91550 4.22768 4.27953 4.31892 4.34287 4.45708 4.50342 4.56921 4.68658 4.72122 4.75781 4.89495 4.91207 4.93853 4.98688 5.10545 5.14961 5.21221 5.26631 5.30059 5.38737 5.47701 5.57001 6.14415 6.22181 6.26847 7.02104 7.32552 8.08979 8.33118 9.28075 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.043883 B = 0.004285 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.913882 B = 6532.192821 C = 6822.443199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.103 3.897 3 H 0.079 0.921 4 O -0.571 6.571 5 C 0.025 3.975 6 N -0.537 5.537 7 C 0.065 3.935 8 C -0.098 4.098 9 C -0.085 4.085 10 C 0.157 3.843 11 N -0.745 5.745 12 C -0.247 4.247 13 H 0.074 0.926 14 C -0.077 4.077 15 N -0.970 5.970 16 Si 0.976 3.024 17 H -0.266 1.266 18 H -0.291 1.291 19 H -0.292 1.292 20 C -0.101 4.101 21 C 0.062 3.938 22 H 0.074 0.926 23 H 0.061 0.939 24 H 0.071 0.929 25 H 0.384 0.616 26 H 0.044 0.956 27 H 0.095 0.905 28 H 0.028 0.972 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.015 0.985 34 H 0.019 0.981 35 H 0.373 0.627 36 H 0.251 0.749 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.400 -11.332 2.910 22.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.044 3.956 3 H 0.097 0.903 4 O -0.378 6.378 5 C -0.103 4.103 6 N -0.262 5.262 7 C -0.063 4.063 8 C -0.137 4.137 9 C -0.104 4.104 10 C 0.031 3.969 11 N -0.388 5.388 12 C -0.379 4.379 13 H 0.092 0.908 14 C -0.269 4.269 15 N -0.621 5.621 16 Si 0.804 3.196 17 H -0.191 1.191 18 H -0.218 1.218 19 H -0.219 1.219 20 C -0.139 4.139 21 C -0.066 4.066 22 H 0.093 0.907 23 H 0.080 0.920 24 H 0.090 0.910 25 H 0.233 0.767 26 H 0.062 0.938 27 H 0.114 0.886 28 H 0.047 0.953 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.033 0.967 34 H 0.037 0.963 35 H 0.206 0.794 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.113 0.887 40 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -18.798 -11.027 3.502 22.073 hybrid contribution 0.521 0.740 -1.025 1.367 sum -18.277 -10.287 2.478 21.119 Atomic orbital electron populations 1.22405 0.94468 1.03570 1.02973 1.21919 0.93480 0.95964 0.84239 0.90328 1.86600 1.77890 1.29813 1.43518 1.22909 0.87124 1.02389 0.97873 1.61865 1.07558 1.09137 1.47642 1.21994 0.94586 0.90282 0.99417 1.21421 0.94597 0.98884 0.98755 1.21248 0.93734 0.97127 0.98252 1.20831 0.92289 0.86902 0.96867 1.42611 1.04484 1.07691 1.83967 1.19706 0.85201 0.94888 1.38069 0.90803 1.25591 1.02448 0.95672 1.03145 1.69832 1.35542 1.00846 1.55919 0.85038 0.79950 0.77744 0.76823 1.19066 1.21824 1.21930 1.21518 0.94777 0.94947 1.02674 1.22089 0.94761 0.97668 0.92050 0.90746 0.91986 0.90958 0.76722 0.93782 0.88624 0.95342 0.90782 0.92557 0.93699 0.92671 0.96695 0.96297 0.79438 0.93980 0.91390 0.90394 0.88675 0.95137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.12 9.53 71.98 0.69 -1.43 16 2 C 0.10 1.83 3.46 30.59 0.11 1.94 16 3 H 0.08 1.67 6.43 -2.39 -0.02 1.65 16 4 O -0.57 -11.96 13.20 -148.98 -1.97 -13.93 16 5 C 0.02 0.43 4.62 86.30 0.40 0.83 16 6 N -0.54 -12.69 4.52 -896.38 -4.05 -16.74 16 7 C 0.07 1.83 5.29 86.33 0.46 2.29 16 8 C -0.10 -3.44 5.22 30.65 0.16 -3.28 16 9 C -0.08 -2.92 2.29 -10.71 -0.02 -2.94 16 10 C 0.16 6.74 5.65 86.38 0.49 7.23 16 11 N -0.74 -40.01 5.36 -343.45 -1.84 -41.85 16 12 C -0.25 -14.43 9.99 84.03 0.84 -13.59 16 13 H 0.07 4.16 7.83 -2.91 -0.02 4.14 16 14 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 15 N -0.97 -61.10 13.06 21.65 0.28 -60.82 16 16 Si 0.98 47.43 29.55 68.60 2.03 49.45 16 17 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 18 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 19 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 20 C -0.10 -2.66 5.38 30.65 0.16 -2.50 16 21 C 0.06 1.36 5.46 86.32 0.47 1.83 16 22 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 23 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 24 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 25 H 0.38 5.05 9.05 -74.05 -0.67 4.38 16 26 H 0.04 0.73 8.12 -2.39 -0.02 0.71 16 27 H 0.10 1.26 7.99 -2.39 -0.02 1.24 16 28 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 2.05 6.21 -2.38 -0.01 2.04 16 30 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.04 1.82 7.27 -2.39 -0.02 1.80 16 32 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.37 21.20 6.89 -92.70 -0.64 20.57 16 36 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 37 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.09 1.63 8.01 -2.39 -0.02 1.61 16 40 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -68.83 315.09 -1.64 -70.46 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: -0.30 Total: 27.12 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: 4.21 Total: -13.70 kcal Atomic # 7 Polarization: -113.80 SS G_CDS: -5.61 Total: -119.41 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: -1.97 Total: -13.93 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.45 kcal Total: -68.83 -1.64 -70.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379917456.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.461 kcal (2) G-P(sol) polarization free energy of solvation -68.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.92 seconds