Wall clock time and date at job start Mon Mar 30 2020 05:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00033 * 2 1 4 4 C 1.53005 * 109.46676 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.47254 * 65.00090 * 4 3 2 6 6 C 1.47846 * 110.99547 * 290.12325 * 5 4 3 7 7 C 1.54915 * 104.79538 * 213.63497 * 6 5 4 8 8 C 1.55138 * 101.64918 * 37.06908 * 7 6 5 9 9 H 1.09005 * 110.70206 * 82.73348 * 8 7 6 10 10 N 1.46897 * 110.85315 * 205.89253 * 8 7 6 11 11 C 1.46904 * 111.00101 * 268.68696 * 10 8 7 12 12 H 1.09000 * 109.46941 * 35.00723 * 11 10 8 13 13 C 1.52995 * 109.47132 * 274.99949 * 11 10 8 14 14 C 1.50701 * 109.46975 * 155.00110 * 11 10 8 15 15 H 1.08004 * 120.00162 * 359.97438 * 14 11 10 16 16 C 1.37878 * 120.00093 * 179.97438 * 14 11 10 17 17 N 1.31513 * 119.99626 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 120.00101 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.47106 * 60.00040 * 18 16 14 20 20 H 1.48498 * 109.46922 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47169 * 300.00002 * 18 16 14 22 22 C 1.47437 * 111.00223 * 169.27923 * 5 4 3 23 23 H 1.09003 * 109.46855 * 300.00545 * 1 2 3 24 24 H 1.08996 * 109.46952 * 60.00095 * 1 2 3 25 25 H 1.08996 * 109.47576 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47275 * 60.00074 * 3 2 1 27 27 H 1.08997 * 109.47097 * 299.99522 * 3 2 1 28 28 H 1.09002 * 109.47270 * 304.99810 * 4 3 2 29 29 H 1.09003 * 109.46878 * 184.99450 * 4 3 2 30 30 H 1.08995 * 110.38030 * 332.46412 * 6 5 4 31 31 H 1.09000 * 110.37255 * 94.81067 * 6 5 4 32 32 H 1.08995 * 110.99221 * 155.16374 * 7 6 5 33 33 H 1.09001 * 110.98790 * 278.98277 * 7 6 5 34 34 H 1.00909 * 111.00155 * 144.73799 * 10 8 7 35 35 H 1.08998 * 109.47022 * 60.00405 * 13 11 10 36 36 H 1.09004 * 109.46968 * 179.97438 * 13 11 10 37 37 H 1.08992 * 109.47758 * 299.99964 * 13 11 10 38 38 H 0.97003 * 119.99540 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.89349 * 242.66131 * 22 5 4 40 40 H 1.08999 * 109.89127 * 3.85194 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9779 0.5621 -1.2543 6 6 3.5928 -0.8645 -1.3026 7 6 4.7369 -1.5568 -2.0846 8 6 5.9790 -0.7774 -1.5781 9 1 6.3228 -1.1780 -0.6244 10 7 7.0591 -0.8111 -2.5732 11 6 7.9526 -1.9539 -2.3417 12 1 7.3721 -2.8006 -1.9752 13 6 9.0099 -1.5726 -1.3036 14 6 8.6304 -2.3313 -3.6337 15 1 8.4183 -1.7779 -4.5366 16 6 9.5214 -3.3832 -3.6632 17 7 9.7793 -4.0574 -2.5639 18 14 10.3621 -3.8505 -5.2645 19 1 11.1525 -2.6967 -5.7637 20 1 11.2652 -5.0058 -5.0306 21 1 9.3363 -4.2209 -6.2724 22 6 5.4414 0.6587 -1.4048 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.6886 1.8464 0.8899 27 1 1.6887 1.8463 -0.8900 28 1 3.8508 0.5684 0.8427 29 1 3.9785 2.1764 0.0901 30 1 3.5212 -1.2727 -0.2945 31 1 2.6463 -0.9844 -1.8296 32 1 4.8053 -2.6128 -1.8233 33 1 4.6078 -1.4297 -3.1595 34 1 7.5748 0.0562 -2.5767 35 1 8.5196 -1.2997 -0.3692 36 1 9.6726 -2.4208 -1.1316 37 1 9.5903 -0.7261 -1.6702 38 1 10.4058 -4.7976 -2.5847 39 1 5.6852 1.2546 -2.2844 40 1 5.8766 1.1126 -0.5145 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379925458.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:19 Heat of formation + Delta-G solvation = -39.064952 kcal Electronic energy + Delta-G solvation = -18020.118312 eV Core-core repulsion = 15255.891592 eV Total energy + Delta-G solvation = -2764.226720 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.11693 -37.63022 -35.43017 -32.78822 -31.26966 -28.81799 -28.53026 -26.36511 -25.63847 -25.02787 -22.50984 -20.78632 -20.28408 -19.62246 -16.61838 -16.45662 -16.21873 -15.75274 -14.87747 -14.81697 -14.51010 -13.94066 -13.62470 -13.25473 -12.77853 -12.63415 -12.39053 -11.92105 -11.81687 -11.56813 -11.39452 -11.23832 -10.95286 -10.87739 -10.68982 -10.55974 -10.36992 -10.22463 -10.04945 -9.75738 -9.72884 -8.94773 -8.32032 -8.09639 -7.19907 -5.94395 -3.97362 3.37695 3.41198 3.44982 3.69876 4.12635 4.47844 4.89183 5.01775 5.09678 5.13946 5.23189 5.27548 5.36958 5.38200 5.42558 5.50028 5.61108 5.67358 5.77789 5.82432 5.96887 6.23646 6.34479 6.44086 6.56573 6.71260 6.81364 6.86027 7.03658 7.13034 7.22735 7.28950 7.44397 7.77087 7.93952 8.32988 8.59004 8.67447 9.09828 9.67796 11.12772 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.048993 B = 0.004350 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.373331 B = 6435.790464 C = 6616.433565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.067 3.933 4 C 0.050 3.950 5 N -0.526 5.526 6 C 0.058 3.942 7 C -0.118 4.118 8 C 0.069 3.931 9 H 0.040 0.960 10 N -0.672 5.672 11 C 0.212 3.788 12 H 0.033 0.967 13 C -0.169 4.169 14 C -0.494 4.494 15 H 0.062 0.938 16 C 0.054 3.946 17 N -0.899 5.899 18 Si 0.898 3.102 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.277 1.277 22 C 0.041 3.959 23 H 0.036 0.964 24 H 0.040 0.960 25 H 0.083 0.917 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.041 0.959 29 H 0.084 0.916 30 H 0.045 0.955 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.325 0.675 35 H 0.002 0.998 36 H 0.089 0.911 37 H 0.027 0.973 38 H 0.259 0.741 39 H 0.084 0.916 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.484 9.601 6.417 18.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C -0.010 4.010 4 C -0.079 4.079 5 N -0.250 5.250 6 C -0.070 4.070 7 C -0.157 4.157 8 C -0.043 4.043 9 H 0.058 0.942 10 N -0.302 5.302 11 C 0.104 3.896 12 H 0.051 0.949 13 C -0.228 4.228 14 C -0.533 4.533 15 H 0.080 0.920 16 C -0.146 4.146 17 N -0.539 5.539 18 Si 0.726 3.274 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.203 1.203 22 C -0.087 4.087 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.102 0.898 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.142 0.858 35 H 0.021 0.979 36 H 0.107 0.893 37 H 0.047 0.953 38 H 0.069 0.931 39 H 0.102 0.898 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -14.881 9.221 5.606 18.382 hybrid contribution 1.208 -0.188 0.799 1.461 sum -13.673 9.032 6.405 17.594 Atomic orbital electron populations 1.22695 0.81620 1.02557 0.99604 1.87983 1.19183 1.27852 1.95308 1.22562 0.93576 0.84906 0.99997 1.22352 0.93599 1.00026 0.91883 1.63592 1.12464 1.16299 1.32680 1.22985 0.98611 0.86161 0.99250 1.22771 0.93049 0.98694 1.01147 1.22640 0.93642 0.93768 0.94227 0.94196 1.60864 1.14516 1.06972 1.47827 1.19198 0.88457 0.87692 0.94277 0.94897 1.22439 1.01867 1.01861 0.96623 1.21129 1.22947 1.14332 0.94843 0.91976 1.24953 0.96879 0.96345 0.96399 1.69879 1.35988 1.21293 1.26725 0.86565 0.79264 0.77742 0.83816 1.20395 1.21521 1.20284 1.23015 0.86944 0.97765 1.00999 0.94552 0.94159 0.89835 0.93410 0.92439 0.94063 0.89744 0.93698 0.90378 0.91558 0.90039 0.85770 0.97854 0.89287 0.95343 0.93079 0.89813 0.93613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.56 8.10 -35.23 -0.29 -4.85 16 3 C 0.07 0.70 6.24 37.16 0.23 0.93 16 4 C 0.05 0.60 5.14 -3.82 -0.02 0.58 16 5 N -0.53 -7.67 5.16 -231.25 -1.19 -8.86 16 6 C 0.06 0.88 5.08 -2.29 -0.01 0.87 16 7 C -0.12 -2.10 6.77 -24.59 -0.17 -2.27 16 8 C 0.07 1.28 3.01 -65.89 -0.20 1.08 16 9 H 0.04 0.80 7.22 -51.93 -0.38 0.42 16 10 N -0.67 -14.49 6.08 -99.05 -0.60 -15.09 16 11 C 0.21 5.40 2.44 -68.86 -0.17 5.23 16 12 H 0.03 0.93 7.86 -51.93 -0.41 0.52 16 13 C -0.17 -4.12 8.92 37.15 0.33 -3.79 16 14 C -0.49 -13.86 8.84 -34.44 -0.30 -14.17 16 15 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 16 C 0.05 1.53 5.30 -17.82 -0.09 1.44 16 17 N -0.90 -26.07 11.32 55.43 0.63 -25.45 16 18 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 C 0.04 0.63 6.36 -2.84 -0.02 0.62 16 23 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 24 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.04 0.52 7.83 -51.93 -0.41 0.11 16 29 H 0.08 0.86 8.01 -51.93 -0.42 0.45 16 30 H 0.04 0.70 7.25 -51.93 -0.38 0.32 16 31 H 0.08 1.18 7.59 -51.93 -0.39 0.79 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 34 H 0.33 6.63 8.06 -39.29 -0.32 6.31 16 35 H 0.00 0.06 7.51 -51.93 -0.39 -0.33 16 36 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 37 H 0.03 0.66 8.13 -51.93 -0.42 0.24 16 38 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.08 1.32 7.90 -51.93 -0.41 0.91 16 40 H 0.05 0.65 7.54 -51.93 -0.39 0.26 16 LS Contribution 314.74 15.07 4.74 4.74 Total: -1.00 -29.46 314.74 -8.16 -37.62 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -7.13 Total: 3.22 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 0.69 Total: -8.10 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: -1.17 Total: -49.40 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.29 Total: -4.85 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.46 -8.16 -37.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379925458.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.446 kcal (2) G-P(sol) polarization free energy of solvation -29.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds