Wall clock time and date at job start Mon Mar 30 2020 05:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00033 * 2 1 4 4 C 1.53005 * 109.46676 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.47254 * 65.00090 * 4 3 2 6 6 C 1.47846 * 110.99547 * 290.12325 * 5 4 3 7 7 C 1.54915 * 104.79538 * 213.63497 * 6 5 4 8 8 C 1.55138 * 101.64918 * 37.06908 * 7 6 5 9 9 H 1.09005 * 110.70206 * 82.73348 * 8 7 6 10 10 N 1.46897 * 110.85315 * 205.89253 * 8 7 6 11 11 C 1.46904 * 111.00101 * 268.68696 * 10 8 7 12 12 H 1.09000 * 109.46941 * 35.00723 * 11 10 8 13 13 C 1.52995 * 109.47132 * 274.99949 * 11 10 8 14 14 C 1.50701 * 109.46975 * 155.00110 * 11 10 8 15 15 H 1.08004 * 120.00162 * 359.97438 * 14 11 10 16 16 C 1.37878 * 120.00093 * 179.97438 * 14 11 10 17 17 N 1.31513 * 119.99626 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 120.00101 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.47106 * 60.00040 * 18 16 14 20 20 H 1.48498 * 109.46922 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47169 * 300.00002 * 18 16 14 22 22 C 1.47437 * 111.00223 * 169.27923 * 5 4 3 23 23 H 1.09003 * 109.46855 * 300.00545 * 1 2 3 24 24 H 1.08996 * 109.46952 * 60.00095 * 1 2 3 25 25 H 1.08996 * 109.47576 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47275 * 60.00074 * 3 2 1 27 27 H 1.08997 * 109.47097 * 299.99522 * 3 2 1 28 28 H 1.09002 * 109.47270 * 304.99810 * 4 3 2 29 29 H 1.09003 * 109.46878 * 184.99450 * 4 3 2 30 30 H 1.08995 * 110.38030 * 332.46412 * 6 5 4 31 31 H 1.09000 * 110.37255 * 94.81067 * 6 5 4 32 32 H 1.08995 * 110.99221 * 155.16374 * 7 6 5 33 33 H 1.09001 * 110.98790 * 278.98277 * 7 6 5 34 34 H 1.00909 * 111.00155 * 144.73799 * 10 8 7 35 35 H 1.08998 * 109.47022 * 60.00405 * 13 11 10 36 36 H 1.09004 * 109.46968 * 179.97438 * 13 11 10 37 37 H 1.08992 * 109.47758 * 299.99964 * 13 11 10 38 38 H 0.97003 * 119.99540 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.89349 * 242.66131 * 22 5 4 40 40 H 1.08999 * 109.89127 * 3.85194 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9779 0.5621 -1.2543 6 6 3.5928 -0.8645 -1.3026 7 6 4.7369 -1.5568 -2.0846 8 6 5.9790 -0.7774 -1.5781 9 1 6.3228 -1.1780 -0.6244 10 7 7.0591 -0.8111 -2.5732 11 6 7.9526 -1.9539 -2.3417 12 1 7.3721 -2.8006 -1.9752 13 6 9.0099 -1.5726 -1.3036 14 6 8.6304 -2.3313 -3.6337 15 1 8.4183 -1.7779 -4.5366 16 6 9.5214 -3.3832 -3.6632 17 7 9.7793 -4.0574 -2.5639 18 14 10.3621 -3.8505 -5.2645 19 1 11.1525 -2.6967 -5.7637 20 1 11.2652 -5.0058 -5.0306 21 1 9.3363 -4.2209 -6.2724 22 6 5.4414 0.6587 -1.4048 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.6886 1.8464 0.8899 27 1 1.6887 1.8463 -0.8900 28 1 3.8508 0.5684 0.8427 29 1 3.9785 2.1764 0.0901 30 1 3.5212 -1.2727 -0.2945 31 1 2.6463 -0.9844 -1.8296 32 1 4.8053 -2.6128 -1.8233 33 1 4.6078 -1.4297 -3.1595 34 1 7.5748 0.0562 -2.5767 35 1 8.5196 -1.2997 -0.3692 36 1 9.6726 -2.4208 -1.1316 37 1 9.5903 -0.7261 -1.6702 38 1 10.4058 -4.7976 -2.5847 39 1 5.6852 1.2546 -2.2844 40 1 5.8766 1.1126 -0.5145 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379925458.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:18 Heat of formation + Delta-G solvation = -60.465895 kcal Electronic energy + Delta-G solvation = -18021.046326 eV Core-core repulsion = 15255.891592 eV Total energy + Delta-G solvation = -2765.154735 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.33725 -38.61600 -37.12827 -34.56572 -32.76555 -30.39527 -29.72800 -27.46827 -27.16747 -26.81211 -23.52892 -22.50316 -21.59025 -21.27580 -18.36905 -17.44092 -17.32336 -17.14685 -16.56131 -16.12154 -15.66282 -15.36389 -14.90344 -14.66284 -14.45020 -14.04176 -13.76086 -13.61659 -13.02146 -12.91446 -12.78330 -12.65865 -12.50725 -12.35969 -12.31058 -12.17194 -12.07355 -11.75263 -11.64703 -11.52422 -11.01665 -10.50641 -10.47837 -9.27221 -8.98457 -8.09084 -6.20310 1.43905 1.46018 1.53675 2.44795 2.96457 3.00081 3.19275 3.58390 3.70427 3.95198 4.18898 4.25916 4.35988 4.43871 4.47435 4.54244 4.60165 4.64510 4.71788 4.73874 4.78313 4.84701 4.91225 4.93501 5.00527 5.03848 5.13912 5.17770 5.30761 5.47521 5.69232 5.83703 5.98768 6.15534 6.28433 6.34087 6.65696 6.84816 6.95427 7.49750 8.96530 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.048993 B = 0.004350 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.373331 B = 6435.790464 C = 6616.433565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.412 6.412 3 C 0.068 3.932 4 C 0.046 3.954 5 N -0.529 5.529 6 C 0.075 3.925 7 C -0.118 4.118 8 C 0.066 3.934 9 H 0.026 0.974 10 N -0.673 5.673 11 C 0.218 3.782 12 H -0.003 1.003 13 C -0.155 4.155 14 C -0.515 4.515 15 H 0.055 0.945 16 C 0.008 3.992 17 N -0.924 5.924 18 Si 0.962 3.038 19 H -0.270 1.270 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.052 3.948 23 H 0.051 0.949 24 H 0.046 0.954 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.035 0.965 29 H 0.106 0.894 30 H 0.042 0.958 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.333 0.667 35 H 0.021 0.979 36 H 0.061 0.939 37 H 0.035 0.965 38 H 0.261 0.739 39 H 0.084 0.916 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.182 11.036 6.439 19.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.332 6.332 3 C -0.009 4.009 4 C -0.082 4.082 5 N -0.254 5.254 6 C -0.053 4.053 7 C -0.157 4.157 8 C -0.045 4.045 9 H 0.044 0.956 10 N -0.304 5.304 11 C 0.109 3.891 12 H 0.015 0.985 13 C -0.215 4.215 14 C -0.554 4.554 15 H 0.074 0.926 16 C -0.190 4.190 17 N -0.564 5.564 18 Si 0.787 3.213 19 H -0.195 1.195 20 H -0.210 1.210 21 H -0.200 1.200 22 C -0.076 4.076 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.106 0.894 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.053 0.947 29 H 0.124 0.876 30 H 0.061 0.939 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.151 0.849 35 H 0.040 0.960 36 H 0.080 0.920 37 H 0.054 0.946 38 H 0.070 0.930 39 H 0.103 0.897 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.598 10.678 5.635 19.725 hybrid contribution 1.362 -0.632 0.830 1.715 sum -14.236 10.046 6.465 18.584 Atomic orbital electron populations 1.22835 0.80076 1.03287 1.00610 1.87933 1.20977 1.28768 1.95532 1.22592 0.92397 0.84703 1.01209 1.22514 0.94941 1.00611 0.90094 1.63618 1.11590 1.15519 1.34656 1.22788 0.97466 0.86504 0.98526 1.22723 0.94169 0.98174 1.00676 1.22685 0.92805 0.96328 0.92709 0.95629 1.60723 1.14352 1.06158 1.49149 1.18931 0.88615 0.87989 0.93532 0.98477 1.22238 1.01133 1.00863 0.97229 1.21428 1.23578 1.14811 0.95571 0.92640 1.25737 0.97446 0.96214 0.99620 1.70012 1.36342 1.21535 1.28551 0.85555 0.78232 0.77651 0.79818 1.19486 1.21016 1.19974 1.22893 0.87595 0.95247 1.01892 0.93057 0.93579 0.89370 0.91036 0.92303 0.94715 0.87625 0.93917 0.89971 0.93097 0.91339 0.84862 0.96013 0.92008 0.94623 0.93034 0.89745 0.91833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.41 -9.02 8.10 -148.98 -1.21 -10.23 16 3 C 0.07 1.24 6.24 71.98 0.45 1.69 16 4 C 0.05 0.99 5.14 86.30 0.44 1.43 16 5 N -0.53 -14.48 5.16 -885.52 -4.57 -19.05 16 6 C 0.07 2.24 5.08 86.78 0.44 2.69 16 7 C -0.12 -4.29 6.77 31.98 0.22 -4.08 16 8 C 0.07 2.45 3.01 46.10 0.14 2.59 16 9 H 0.03 1.03 7.22 -2.38 -0.02 1.01 16 10 N -0.67 -29.13 6.08 -467.28 -2.84 -31.98 16 11 C 0.22 11.34 2.44 44.17 0.11 11.45 16 12 H 0.00 -0.16 7.86 -2.39 -0.02 -0.18 16 13 C -0.16 -7.62 8.92 71.98 0.64 -6.98 16 14 C -0.52 -29.25 8.84 25.60 0.23 -29.02 16 15 H 0.06 3.15 7.81 -2.91 -0.02 3.13 16 16 C 0.01 0.44 5.30 84.66 0.45 0.89 16 17 N -0.92 -54.30 11.32 21.45 0.24 -54.06 16 18 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 19 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 20 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 21 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 22 C 0.05 1.52 6.36 86.65 0.55 2.07 16 23 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.03 0.80 7.83 -2.39 -0.02 0.78 16 29 H 0.11 1.80 8.01 -2.39 -0.02 1.78 16 30 H 0.04 1.30 7.25 -2.39 -0.02 1.29 16 31 H 0.08 2.41 7.59 -2.39 -0.02 2.39 16 32 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.33 13.36 8.06 -89.69 -0.72 12.63 16 35 H 0.02 0.94 7.51 -2.39 -0.02 0.92 16 36 H 0.06 3.39 6.07 -2.38 -0.01 3.38 16 37 H 0.03 1.65 8.13 -2.39 -0.02 1.63 16 38 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 39 H 0.08 2.50 7.90 -2.39 -0.02 2.48 16 40 H 0.06 1.65 7.54 -2.39 -0.02 1.63 16 Total: -1.00 -62.84 314.74 -1.16 -64.00 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.27 Total: 20.19 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: 4.91 Total: -15.60 kcal Atomic # 7 Polarization: -97.92 SS G_CDS: -7.16 Total: -105.08 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -1.21 Total: -10.23 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -62.84 -1.16 -64.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379925458.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.535 kcal (2) G-P(sol) polarization free energy of solvation -62.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds