Wall clock time and date at job start Mon Mar 30 2020 05:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99775 * 2 1 4 4 C 1.53000 * 109.47240 * 180.02562 * 3 2 1 5 5 N 1.46892 * 109.47129 * 65.00070 * 4 3 2 6 6 C 1.48565 * 111.00263 * 290.12701 * 5 4 3 7 7 C 1.54375 * 104.59469 * 200.96251 * 6 5 4 8 8 C 1.54258 * 105.06455 * 23.85367 * 7 6 5 9 9 H 1.09001 * 110.31831 * 241.00444 * 8 7 6 10 10 N 1.46899 * 110.32788 * 118.89716 * 8 7 6 11 11 C 1.46894 * 110.99892 * 87.82368 * 10 8 7 12 12 H 1.09004 * 109.47353 * 35.00721 * 11 10 8 13 13 C 1.52997 * 109.47489 * 275.00297 * 11 10 8 14 14 C 1.50708 * 109.46889 * 155.00229 * 11 10 8 15 15 H 1.08000 * 119.99473 * 5.61631 * 14 11 10 16 16 C 1.37874 * 119.99910 * 185.61864 * 14 11 10 17 17 N 1.31515 * 119.99820 * 196.67648 * 16 14 11 18 18 Si 1.86796 * 120.00316 * 16.66997 * 16 14 11 19 19 H 1.48504 * 109.47089 * 179.97438 * 18 16 14 20 20 H 1.48501 * 109.47359 * 300.00250 * 18 16 14 21 21 H 1.48503 * 109.46976 * 60.00583 * 18 16 14 22 22 C 1.48717 * 111.01640 * 174.62115 * 5 4 3 23 23 H 1.08997 * 109.47161 * 60.00341 * 1 2 3 24 24 H 1.09007 * 109.46484 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47234 * 299.99385 * 1 2 3 26 26 H 1.09004 * 109.47123 * 59.99763 * 3 2 1 27 27 H 1.09007 * 109.47296 * 300.00167 * 3 2 1 28 28 H 1.09003 * 109.46590 * 304.99990 * 4 3 2 29 29 H 1.08999 * 109.47212 * 185.00279 * 4 3 2 30 30 H 1.08996 * 110.41214 * 82.17836 * 6 5 4 31 31 H 1.09003 * 110.50792 * 319.78921 * 6 5 4 32 32 H 1.09004 * 110.32566 * 264.95209 * 7 6 5 33 33 H 1.09000 * 110.41068 * 142.79428 * 7 6 5 34 34 H 1.00891 * 111.00242 * 211.78433 * 10 8 7 35 35 H 1.09004 * 109.47089 * 306.90250 * 13 11 10 36 36 H 1.09000 * 109.47106 * 66.90851 * 13 11 10 37 37 H 1.09002 * 109.46979 * 186.90706 * 13 11 10 38 38 H 0.97004 * 120.00252 * 356.05846 * 17 16 14 39 39 H 1.09000 * 110.38992 * 40.24116 * 22 5 4 40 40 H 1.09008 * 110.50736 * 277.75072 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9769 0.5629 -1.2561 6 6 3.5901 -0.8707 -1.3050 7 6 4.5415 -1.4949 -2.3483 8 6 5.7713 -0.5642 -2.3769 9 1 5.8985 -0.1355 -3.3709 10 7 6.9787 -1.3018 -1.9818 11 6 7.6065 -1.9448 -3.1438 12 1 7.4839 -1.3095 -4.0210 13 6 6.9419 -3.2992 -3.3981 14 6 9.0749 -2.1488 -2.8726 15 1 9.4816 -1.9165 -1.8995 16 6 9.8989 -2.6319 -3.8669 17 7 11.0823 -3.1179 -3.5618 18 14 9.3345 -2.5964 -5.6472 19 1 10.3958 -3.1683 -6.5144 20 1 8.0929 -3.3986 -5.7890 21 1 9.0666 -1.1934 -6.0536 22 6 5.4610 0.5459 -1.3499 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0278 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 1.6885 1.8464 0.8900 27 1 1.6885 1.8465 -0.8900 28 1 3.8514 0.5683 0.8410 29 1 3.9785 2.1766 0.0890 30 1 2.5535 -0.9740 -1.6259 31 1 3.7342 -1.3385 -0.3311 32 1 4.0641 -1.5217 -3.3278 33 1 4.8340 -2.4995 -2.0429 34 1 7.6320 -0.6978 -1.5060 35 1 6.9565 -3.8890 -2.4815 36 1 5.9103 -3.1441 -3.7141 37 1 7.4855 -3.8295 -4.1801 38 1 11.3989 -3.0843 -2.6455 39 1 5.8999 0.3022 -0.3824 40 1 5.8322 1.5072 -1.7054 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379925460.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:28 Heat of formation + Delta-G solvation = -38.453318 kcal Electronic energy + Delta-G solvation = -18128.566479 eV Core-core repulsion = 15364.366281 eV Total energy + Delta-G solvation = -2764.200198 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 3.01 seconds Orbital eigenvalues (eV) -39.16284 -37.72386 -35.52891 -32.84773 -31.39771 -29.36650 -28.62929 -26.50716 -26.09963 -24.43672 -22.55013 -20.82174 -20.10883 -19.35983 -17.45080 -16.72964 -16.54363 -15.68364 -15.08654 -14.86374 -14.59873 -13.94217 -13.54593 -13.48241 -13.23314 -12.58338 -12.49886 -12.16078 -11.80760 -11.68471 -11.50766 -11.31231 -11.23021 -10.86736 -10.83461 -10.63336 -10.27334 -10.18850 -9.87154 -9.76847 -9.54837 -8.84390 -8.36725 -8.22052 -7.50427 -6.44531 -4.05803 3.40921 3.43623 3.61937 3.63709 4.06242 4.49910 4.81456 4.95779 5.03960 5.05818 5.14641 5.20180 5.28112 5.32314 5.38715 5.44496 5.53378 5.65455 5.65930 5.73455 5.91374 6.03005 6.28951 6.38765 6.47092 6.50496 6.59008 6.76421 6.83701 6.93634 6.98981 7.10273 7.14387 7.52093 7.80263 8.16608 8.40880 8.53473 8.97025 9.63103 10.95371 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.050839 B = 0.004646 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.623976 B = 6024.700647 C = 6213.765745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.067 3.933 4 C 0.045 3.955 5 N -0.511 5.511 6 C 0.049 3.951 7 C -0.119 4.119 8 C 0.082 3.918 9 H 0.045 0.955 10 N -0.674 5.674 11 C 0.189 3.811 12 H -0.006 1.006 13 C -0.139 4.139 14 C -0.604 4.604 15 H 0.059 0.941 16 C 0.031 3.969 17 N -0.907 5.907 18 Si 1.047 2.953 19 H -0.286 1.286 20 H -0.273 1.273 21 H -0.286 1.286 22 C 0.031 3.969 23 H 0.040 0.960 24 H 0.083 0.917 25 H 0.037 0.963 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.044 0.956 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.042 0.958 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.336 0.664 35 H 0.048 0.952 36 H 0.022 0.978 37 H 0.050 0.950 38 H 0.267 0.733 39 H 0.051 0.949 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.106 8.407 5.593 21.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C -0.010 4.010 4 C -0.084 4.084 5 N -0.235 5.235 6 C -0.078 4.078 7 C -0.157 4.157 8 C -0.029 4.029 9 H 0.063 0.937 10 N -0.305 5.305 11 C 0.080 3.920 12 H 0.011 0.989 13 C -0.197 4.197 14 C -0.643 4.643 15 H 0.077 0.923 16 C -0.174 4.174 17 N -0.541 5.541 18 Si 0.875 3.125 19 H -0.212 1.212 20 H -0.199 1.199 21 H -0.212 1.212 22 C -0.097 4.097 23 H 0.058 0.942 24 H 0.102 0.898 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.154 0.846 35 H 0.067 0.933 36 H 0.041 0.959 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.131 7.551 3.818 20.919 hybrid contribution 0.112 1.067 1.915 2.195 sum -19.019 8.618 5.734 21.653 Atomic orbital electron populations 1.22704 0.81575 1.02595 0.99660 1.87991 1.19245 1.27861 1.95267 1.22549 0.93475 0.84915 1.00090 1.22279 0.93645 1.00388 0.92097 1.65422 1.09898 1.15968 1.32229 1.23075 0.99645 0.86809 0.98313 1.22527 0.94650 1.00173 0.98389 1.22267 0.92516 0.91899 0.96241 0.93660 1.60736 1.07613 1.33964 1.28234 1.19466 0.94177 0.91129 0.87251 0.98858 1.22201 0.97267 0.99553 1.00645 1.22115 0.91962 1.49790 1.00400 0.92282 1.25720 0.94738 0.92159 1.04786 1.70858 1.21193 1.39362 1.22657 0.84020 0.75916 0.76921 0.75602 1.21167 1.19891 1.21207 1.23308 0.88148 0.99158 0.99111 0.94161 0.89803 0.94461 0.93256 0.92472 0.93793 0.89606 0.89850 0.93951 0.92234 0.89925 0.84598 0.93310 0.95907 0.93135 0.92265 0.93027 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.40 7.94 -35.23 -0.28 -4.68 16 3 C 0.07 0.67 6.24 37.16 0.23 0.90 16 4 C 0.04 0.52 5.38 -3.83 -0.02 0.49 16 5 N -0.51 -7.20 5.37 -229.84 -1.23 -8.44 16 6 C 0.05 0.73 5.11 -2.18 -0.01 0.72 16 7 C -0.12 -1.98 5.51 -25.35 -0.14 -2.12 16 8 C 0.08 1.47 3.37 -66.33 -0.22 1.25 16 9 H 0.05 0.87 7.46 -51.93 -0.39 0.48 16 10 N -0.67 -14.22 6.03 -99.51 -0.60 -14.82 16 11 C 0.19 4.59 2.18 -68.87 -0.15 4.44 16 12 H -0.01 -0.15 6.12 -51.93 -0.32 -0.47 16 13 C -0.14 -3.20 8.25 37.16 0.31 -2.89 16 14 C -0.60 -17.13 8.83 -34.44 -0.30 -17.43 16 15 H 0.06 1.79 7.92 -52.49 -0.42 1.38 16 16 C 0.03 0.91 5.30 -17.82 -0.09 0.82 16 17 N -0.91 -28.07 13.70 55.43 0.76 -27.31 16 18 Si 1.05 25.58 26.26 -169.99 -4.46 21.12 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.27 -6.20 5.72 56.52 0.32 -5.88 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 C 0.03 0.47 5.95 -2.09 -0.01 0.46 16 23 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 24 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 28 H 0.04 0.54 7.88 -51.93 -0.41 0.13 16 29 H 0.09 0.85 8.13 -51.93 -0.42 0.43 16 30 H 0.08 1.20 6.80 -51.93 -0.35 0.85 16 31 H 0.04 0.66 7.83 -51.93 -0.41 0.25 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 1.49 6.75 -51.93 -0.35 1.14 16 34 H 0.34 7.10 7.90 -39.30 -0.31 6.79 16 35 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.02 0.46 6.53 -51.93 -0.34 0.12 16 37 H 0.05 1.20 4.81 -51.93 -0.25 0.95 16 38 H 0.27 8.25 8.73 -40.82 -0.36 7.89 16 39 H 0.05 0.79 7.84 -51.93 -0.41 0.39 16 40 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 LS Contribution 306.21 15.07 4.61 4.61 Total: -1.00 -30.56 306.21 -7.49 -38.05 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -6.98 Total: 3.46 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: 0.69 Total: -12.00 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: -1.08 Total: -50.57 kcal Atomic # 8 Polarization: -4.40 SS G_CDS: -0.28 Total: -4.68 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -4.46 Total: 21.12 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.56 -7.49 -38.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379925460.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.399 kcal (2) G-P(sol) polarization free energy of solvation -30.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.01 seconds