Wall clock time and date at job start Mon Mar 30 2020 05:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99775 * 2 1 4 4 C 1.53000 * 109.47240 * 180.02562 * 3 2 1 5 5 N 1.46892 * 109.47129 * 65.00070 * 4 3 2 6 6 C 1.48565 * 111.00263 * 290.12701 * 5 4 3 7 7 C 1.54375 * 104.59469 * 200.96251 * 6 5 4 8 8 C 1.54258 * 105.06455 * 23.85367 * 7 6 5 9 9 H 1.09001 * 110.31831 * 241.00444 * 8 7 6 10 10 N 1.46899 * 110.32788 * 118.89716 * 8 7 6 11 11 C 1.46894 * 110.99892 * 87.82368 * 10 8 7 12 12 H 1.09004 * 109.47353 * 35.00721 * 11 10 8 13 13 C 1.52997 * 109.47489 * 275.00297 * 11 10 8 14 14 C 1.50708 * 109.46889 * 155.00229 * 11 10 8 15 15 H 1.08000 * 119.99473 * 5.61631 * 14 11 10 16 16 C 1.37874 * 119.99910 * 185.61864 * 14 11 10 17 17 N 1.31515 * 119.99820 * 196.67648 * 16 14 11 18 18 Si 1.86796 * 120.00316 * 16.66997 * 16 14 11 19 19 H 1.48504 * 109.47089 * 179.97438 * 18 16 14 20 20 H 1.48501 * 109.47359 * 300.00250 * 18 16 14 21 21 H 1.48503 * 109.46976 * 60.00583 * 18 16 14 22 22 C 1.48717 * 111.01640 * 174.62115 * 5 4 3 23 23 H 1.08997 * 109.47161 * 60.00341 * 1 2 3 24 24 H 1.09007 * 109.46484 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47234 * 299.99385 * 1 2 3 26 26 H 1.09004 * 109.47123 * 59.99763 * 3 2 1 27 27 H 1.09007 * 109.47296 * 300.00167 * 3 2 1 28 28 H 1.09003 * 109.46590 * 304.99990 * 4 3 2 29 29 H 1.08999 * 109.47212 * 185.00279 * 4 3 2 30 30 H 1.08996 * 110.41214 * 82.17836 * 6 5 4 31 31 H 1.09003 * 110.50792 * 319.78921 * 6 5 4 32 32 H 1.09004 * 110.32566 * 264.95209 * 7 6 5 33 33 H 1.09000 * 110.41068 * 142.79428 * 7 6 5 34 34 H 1.00891 * 111.00242 * 211.78433 * 10 8 7 35 35 H 1.09004 * 109.47089 * 306.90250 * 13 11 10 36 36 H 1.09000 * 109.47106 * 66.90851 * 13 11 10 37 37 H 1.09002 * 109.46979 * 186.90706 * 13 11 10 38 38 H 0.97004 * 120.00252 * 356.05846 * 17 16 14 39 39 H 1.09000 * 110.38992 * 40.24116 * 22 5 4 40 40 H 1.09008 * 110.50736 * 277.75072 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9769 0.5629 -1.2561 6 6 3.5901 -0.8707 -1.3050 7 6 4.5415 -1.4949 -2.3483 8 6 5.7713 -0.5642 -2.3769 9 1 5.8985 -0.1355 -3.3709 10 7 6.9787 -1.3018 -1.9818 11 6 7.6065 -1.9448 -3.1438 12 1 7.4839 -1.3095 -4.0210 13 6 6.9419 -3.2992 -3.3981 14 6 9.0749 -2.1488 -2.8726 15 1 9.4816 -1.9165 -1.8995 16 6 9.8989 -2.6319 -3.8669 17 7 11.0823 -3.1179 -3.5618 18 14 9.3345 -2.5964 -5.6472 19 1 10.3958 -3.1683 -6.5144 20 1 8.0929 -3.3986 -5.7890 21 1 9.0666 -1.1934 -6.0536 22 6 5.4610 0.5459 -1.3499 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0278 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 1.6885 1.8464 0.8900 27 1 1.6885 1.8465 -0.8900 28 1 3.8514 0.5683 0.8410 29 1 3.9785 2.1766 0.0890 30 1 2.5535 -0.9740 -1.6259 31 1 3.7342 -1.3385 -0.3311 32 1 4.0641 -1.5217 -3.3278 33 1 4.8340 -2.4995 -2.0429 34 1 7.6320 -0.6978 -1.5060 35 1 6.9565 -3.8890 -2.4815 36 1 5.9103 -3.1441 -3.7141 37 1 7.4855 -3.8295 -4.1801 38 1 11.3989 -3.0843 -2.6455 39 1 5.8999 0.3022 -0.3824 40 1 5.8322 1.5072 -1.7054 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379925460.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:23 Heat of formation + Delta-G solvation = -62.281977 kcal Electronic energy + Delta-G solvation = -18129.599767 eV Core-core repulsion = 15364.366281 eV Total energy + Delta-G solvation = -2765.233486 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 4.04 seconds Orbital eigenvalues (eV) -40.33357 -38.67751 -37.14486 -34.68768 -32.90190 -30.94993 -29.71275 -27.77295 -27.06100 -26.42763 -23.55177 -22.03616 -21.83146 -20.91562 -19.58847 -17.57227 -17.45889 -16.92365 -16.46127 -16.13744 -15.78413 -15.28988 -15.18058 -14.85902 -14.68942 -14.12542 -13.83461 -13.59448 -13.32523 -12.99984 -12.73406 -12.58790 -12.45810 -12.33763 -12.26685 -11.99380 -11.78977 -11.74088 -11.51885 -11.40261 -10.97996 -10.51316 -10.41913 -9.49590 -9.22973 -8.74957 -6.38606 1.45506 1.51477 1.71267 2.47213 2.92741 2.95281 3.05418 3.60859 3.69206 3.81769 4.18552 4.25950 4.33301 4.39639 4.45573 4.55913 4.58280 4.61726 4.66935 4.68883 4.70734 4.88184 4.88513 4.91309 4.96330 5.02899 5.03519 5.16248 5.23415 5.28877 5.60463 5.76089 5.85967 6.00989 6.05758 6.29944 6.30576 6.68340 6.78031 7.39772 8.62469 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.050839 B = 0.004646 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.623976 B = 6024.700647 C = 6213.765745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.412 6.412 3 C 0.068 3.932 4 C 0.042 3.958 5 N -0.511 5.511 6 C 0.062 3.938 7 C -0.117 4.117 8 C 0.078 3.922 9 H 0.039 0.961 10 N -0.677 5.677 11 C 0.192 3.808 12 H -0.004 1.004 13 C -0.132 4.132 14 C -0.607 4.607 15 H 0.023 0.977 16 C -0.018 4.018 17 N -0.938 5.938 18 Si 1.084 2.916 19 H -0.288 1.288 20 H -0.243 1.243 21 H -0.267 1.267 22 C 0.039 3.961 23 H 0.046 0.954 24 H 0.089 0.911 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.035 0.965 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.031 0.969 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.332 0.668 35 H 0.037 0.963 36 H 0.051 0.949 37 H 0.042 0.958 38 H 0.252 0.748 39 H 0.047 0.953 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.669 9.450 4.912 24.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.331 6.331 3 C -0.008 4.008 4 C -0.087 4.087 5 N -0.236 5.236 6 C -0.066 4.066 7 C -0.156 4.156 8 C -0.033 4.033 9 H 0.057 0.943 10 N -0.308 5.308 11 C 0.082 3.918 12 H 0.013 0.987 13 C -0.190 4.190 14 C -0.645 4.645 15 H 0.041 0.959 16 C -0.217 4.217 17 N -0.574 5.574 18 Si 0.905 3.095 19 H -0.214 1.214 20 H -0.167 1.167 21 H -0.193 1.193 22 C -0.090 4.090 23 H 0.065 0.935 24 H 0.108 0.892 25 H 0.069 0.931 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.053 0.947 29 H 0.122 0.878 30 H 0.109 0.891 31 H 0.050 0.950 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.150 0.850 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -21.728 8.607 3.169 23.585 hybrid contribution 0.886 0.787 2.248 2.541 sum -20.842 9.394 5.417 23.495 Atomic orbital electron populations 1.22846 0.80019 1.03366 1.00636 1.87939 1.21030 1.28671 1.95480 1.22567 0.92212 0.84762 1.01277 1.22420 0.95034 1.00823 0.90386 1.65453 1.08770 1.15373 1.33970 1.22933 0.99477 0.87133 0.97089 1.22493 0.94445 0.99154 0.99483 1.22356 0.91398 0.92865 0.96689 0.94346 1.60700 1.08277 1.34819 1.27008 1.19335 0.91877 0.92276 0.88298 0.98699 1.22088 0.98714 0.98243 0.99968 1.22349 0.94573 1.48859 0.98746 0.95876 1.27151 0.94188 0.91374 1.08977 1.70988 1.22733 1.41956 1.21680 0.83576 0.76731 0.78440 0.70731 1.21387 1.16725 1.19258 1.23204 0.89167 0.98597 0.98001 0.93508 0.89247 0.93114 0.91050 0.92226 0.94663 0.87788 0.89089 0.95016 0.91297 0.91414 0.85012 0.94344 0.93013 0.93894 0.93901 0.93477 0.89477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.41 -8.48 7.94 -148.98 -1.18 -9.66 16 3 C 0.07 1.19 6.24 71.98 0.45 1.64 16 4 C 0.04 0.86 5.38 86.30 0.46 1.33 16 5 N -0.51 -13.27 5.37 -881.06 -4.73 -18.00 16 6 C 0.06 1.71 5.11 86.45 0.44 2.15 16 7 C -0.12 -3.68 5.51 31.49 0.17 -3.51 16 8 C 0.08 2.66 3.37 45.81 0.15 2.82 16 9 H 0.04 1.39 7.46 -2.39 -0.02 1.38 16 10 N -0.68 -28.25 6.03 -468.74 -2.83 -31.08 16 11 C 0.19 9.17 2.18 44.17 0.10 9.27 16 12 H 0.00 -0.21 6.12 -2.38 -0.01 -0.23 16 13 C -0.13 -5.89 8.25 71.98 0.59 -5.29 16 14 C -0.61 -34.95 8.83 25.60 0.23 -34.72 16 15 H 0.02 1.45 7.92 -2.91 -0.02 1.43 16 16 C -0.02 -1.08 5.30 84.65 0.45 -0.63 16 17 N -0.94 -59.45 13.70 21.45 0.29 -59.15 16 18 Si 1.08 50.48 26.26 68.60 1.80 52.28 16 19 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 20 H -0.24 -10.12 5.72 99.48 0.57 -9.55 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 22 C 0.04 1.11 5.95 86.42 0.51 1.62 16 23 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 24 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 25 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.04 0.80 7.88 -2.39 -0.02 0.78 16 29 H 0.10 1.76 8.13 -2.39 -0.02 1.74 16 30 H 0.09 2.42 6.80 -2.39 -0.02 2.40 16 31 H 0.03 0.95 7.83 -2.39 -0.02 0.93 16 32 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.07 2.34 6.75 -2.39 -0.02 2.32 16 34 H 0.33 14.14 7.90 -89.70 -0.71 13.43 16 35 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.05 1.98 6.53 -2.39 -0.02 1.96 16 37 H 0.04 1.95 4.81 -2.39 -0.01 1.94 16 38 H 0.25 16.22 8.73 -92.71 -0.81 15.41 16 39 H 0.05 1.39 7.84 -2.39 -0.02 1.37 16 40 H 0.09 2.29 8.14 -2.38 -0.02 2.28 16 Total: -1.00 -65.83 306.21 -1.72 -67.55 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 0.12 Total: 21.77 kcal Atomic # 6 Polarization: -28.51 SS G_CDS: 4.81 Total: -23.70 kcal Atomic # 7 Polarization: -100.97 SS G_CDS: -7.26 Total: -108.23 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -1.18 Total: -9.66 kcal Atomic # 14 Polarization: 50.48 SS G_CDS: 1.80 Total: 52.28 kcal Total: -65.83 -1.72 -67.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379925460.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.265 kcal (2) G-P(sol) polarization free energy of solvation -65.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.04 seconds