Wall clock time and date at job start Mon Mar 30 2020 05:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00563 * 2 1 4 4 C 1.52993 * 109.47377 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47296 * 64.14406 * 4 3 2 6 6 C 1.47904 * 111.00271 * 175.78974 * 5 4 3 7 7 C 1.53992 * 107.05898 * 214.16261 * 6 5 4 8 8 C 1.54592 * 105.13952 * 1.22033 * 7 6 5 9 9 H 1.08994 * 110.73115 * 263.42149 * 8 7 6 10 10 N 1.46904 * 110.72100 * 140.31861 * 8 7 6 11 11 C 1.46900 * 111.00118 * 86.45773 * 10 8 7 12 12 H 1.09000 * 109.46953 * 324.99521 * 11 10 8 13 13 C 1.53000 * 109.47477 * 84.99796 * 11 10 8 14 14 C 1.50700 * 109.46921 * 205.00162 * 11 10 8 15 15 H 1.07993 * 120.00137 * 359.97438 * 14 11 10 16 16 C 1.37887 * 119.99575 * 179.97438 * 14 11 10 17 17 N 1.31506 * 120.00063 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 119.99548 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.47297 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47024 * 119.99859 * 18 16 14 21 21 H 1.48504 * 109.46494 * 239.99675 * 18 16 14 22 22 C 1.48539 * 110.99479 * 58.39513 * 5 4 3 23 23 H 1.08998 * 109.46677 * 300.00213 * 1 2 3 24 24 H 1.09001 * 109.46752 * 59.99280 * 1 2 3 25 25 H 1.09001 * 109.47614 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46960 * 300.00106 * 3 2 1 27 27 H 1.09006 * 109.46788 * 60.00107 * 3 2 1 28 28 H 1.09003 * 109.47534 * 184.14928 * 4 3 2 29 29 H 1.09000 * 109.47332 * 304.15016 * 4 3 2 30 30 H 1.09001 * 109.91477 * 333.51043 * 6 5 4 31 31 H 1.08996 * 109.91631 * 94.61040 * 6 5 4 32 32 H 1.09001 * 110.31002 * 120.14468 * 7 6 5 33 33 H 1.09005 * 110.30175 * 242.20995 * 7 6 5 34 34 H 1.00902 * 111.00018 * 322.49743 * 10 8 7 35 35 H 1.09003 * 109.46764 * 59.99961 * 13 11 10 36 36 H 1.08994 * 109.47172 * 179.97438 * 13 11 10 37 37 H 1.08999 * 109.46979 * 300.00277 * 13 11 10 38 38 H 0.97006 * 120.00197 * 180.02562 * 17 16 14 39 39 H 1.08999 * 110.66888 * 278.15194 * 22 5 4 40 40 H 1.09002 * 110.66738 * 41.29202 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9754 0.5439 -1.2473 6 6 5.4516 0.5006 -1.3288 7 6 5.8272 0.6675 -2.8128 8 6 4.4809 0.8381 -3.5533 9 1 4.1449 -0.1127 -3.9668 10 7 4.5941 1.8515 -4.6107 11 6 5.0834 1.2555 -5.8610 12 1 5.7978 0.4649 -5.6314 13 6 3.9057 0.6679 -6.6411 14 6 5.7579 2.3159 -6.6927 15 1 5.8168 3.3310 -6.3291 16 6 6.2999 1.9898 -7.9180 17 7 6.2286 0.7535 -8.3605 18 14 7.1353 3.3044 -8.9493 19 1 7.0822 4.6039 -8.2325 20 1 8.5518 2.9246 -9.1824 21 1 6.4353 3.4297 -10.2530 22 6 3.5271 1.3203 -2.4316 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.6887 1.8463 -0.8900 27 1 1.6887 1.8463 0.8901 28 1 3.9788 2.1775 0.0737 29 1 3.8525 0.5806 0.8496 30 1 5.8798 1.3145 -0.7436 31 1 5.8161 -0.4565 -0.9557 32 1 6.4486 1.5527 -2.9486 33 1 6.3491 -0.2192 -3.1729 34 1 5.1857 2.6148 -4.3182 35 1 3.1913 1.4585 -6.8707 36 1 4.2687 0.2260 -7.5690 37 1 3.4179 -0.0991 -6.0395 38 1 6.6102 0.5240 -9.2223 39 1 2.4923 1.0828 -2.6781 40 1 3.6468 2.3898 -2.2583 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379925462.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:34 Heat of formation + Delta-G solvation = -39.608608 kcal Electronic energy + Delta-G solvation = -18028.750373 eV Core-core repulsion = 15264.500078 eV Total energy + Delta-G solvation = -2764.250295 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.13194 -37.59252 -35.42402 -32.89409 -31.27003 -28.91790 -28.16809 -26.59861 -25.85193 -25.05842 -22.44764 -20.76552 -20.27633 -19.46036 -16.75210 -16.57541 -15.99237 -15.70843 -15.13186 -14.77207 -14.59719 -13.96856 -13.34505 -13.29853 -12.94434 -12.66558 -12.41915 -12.24307 -11.69424 -11.53236 -11.42510 -11.15678 -10.94688 -10.91323 -10.80999 -10.66027 -10.24143 -10.17476 -10.09680 -9.81367 -9.66509 -8.80768 -8.47323 -8.20657 -7.23754 -6.01977 -4.08372 3.28481 3.36422 3.40251 3.74145 4.11992 4.40804 4.83519 4.97782 5.11172 5.18763 5.25409 5.28531 5.31018 5.32873 5.40798 5.49069 5.55841 5.61530 5.69617 5.83064 5.94732 6.04722 6.21504 6.25673 6.52269 6.58974 6.91673 7.05440 7.07916 7.18356 7.27026 7.30066 7.55975 7.79197 7.92077 8.28937 8.40878 8.68647 9.02771 9.57568 11.04337 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.040136 B = 0.004603 C = 0.004410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.463728 B = 6081.170359 C = 6347.677200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.063 3.937 4 C 0.050 3.950 5 N -0.510 5.510 6 C 0.040 3.960 7 C -0.159 4.159 8 C 0.091 3.909 9 H 0.085 0.915 10 N -0.681 5.681 11 C 0.212 3.788 12 H 0.003 0.997 13 C -0.125 4.125 14 C -0.518 4.518 15 H 0.059 0.941 16 C 0.062 3.938 17 N -0.889 5.889 18 Si 0.895 3.105 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.047 3.953 23 H 0.035 0.965 24 H 0.040 0.960 25 H 0.084 0.916 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.038 0.962 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.330 0.670 35 H 0.030 0.970 36 H 0.080 0.920 37 H 0.005 0.995 38 H 0.260 0.740 39 H 0.079 0.921 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.383 0.514 15.682 16.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.292 6.292 3 C -0.014 4.014 4 C -0.079 4.079 5 N -0.235 5.235 6 C -0.088 4.088 7 C -0.199 4.199 8 C -0.022 4.022 9 H 0.103 0.897 10 N -0.311 5.311 11 C 0.105 3.895 12 H 0.021 0.979 13 C -0.183 4.183 14 C -0.557 4.557 15 H 0.077 0.923 16 C -0.140 4.140 17 N -0.528 5.528 18 Si 0.723 3.277 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.081 4.081 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.102 0.898 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.098 0.902 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.148 0.852 35 H 0.049 0.951 36 H 0.098 0.902 37 H 0.024 0.976 38 H 0.070 0.930 39 H 0.098 0.902 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.107 -0.325 15.327 16.898 hybrid contribution 1.542 1.584 -0.330 2.235 sum -5.565 1.259 14.997 16.045 Atomic orbital electron populations 1.22721 0.81778 1.02576 0.99569 1.88007 1.18826 1.27160 1.95233 1.22588 0.93513 0.85280 0.99992 1.22278 0.93595 0.97712 0.94313 1.64764 1.09013 1.48265 1.01449 1.22791 0.88200 1.00728 0.97061 1.23174 0.99857 1.02428 0.94484 1.22407 0.92004 0.96603 0.91148 0.89712 1.60700 1.56688 1.09808 1.03873 1.19091 0.91776 0.93827 0.84798 0.97943 1.21726 0.97612 0.97728 1.01266 1.21299 1.35735 0.95420 1.03207 0.92286 1.24916 0.96056 0.95418 0.97594 1.69909 1.45424 1.17441 1.19990 0.86488 0.79040 0.81879 0.80256 1.19808 1.21118 1.20976 1.23201 0.99980 0.95243 0.89708 0.94651 0.94137 0.89786 0.92886 0.93392 0.93472 0.90154 0.94402 0.90801 0.91476 0.91249 0.85234 0.95052 0.90159 0.97594 0.92992 0.90220 0.93891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.41 16 2 O -0.37 -4.91 10.64 -35.23 -0.37 -5.29 16 3 C 0.06 0.72 5.88 37.15 0.22 0.94 16 4 C 0.05 0.60 5.23 -3.83 -0.02 0.58 16 5 N -0.51 -7.50 5.29 -230.45 -1.22 -8.72 16 6 C 0.04 0.57 6.70 -2.75 -0.02 0.55 16 7 C -0.16 -2.64 6.46 -25.38 -0.16 -2.80 16 8 C 0.09 1.67 3.13 -65.85 -0.21 1.47 16 9 H 0.08 1.73 7.22 -51.93 -0.38 1.35 16 10 N -0.68 -14.50 6.16 -99.01 -0.61 -15.11 16 11 C 0.21 5.39 2.47 -68.86 -0.17 5.22 16 12 H 0.00 0.08 7.75 -51.93 -0.40 -0.32 16 13 C -0.12 -3.16 9.18 37.16 0.34 -2.82 16 14 C -0.52 -14.20 8.59 -34.44 -0.30 -14.49 16 15 H 0.06 1.60 7.62 -52.49 -0.40 1.20 16 16 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 17 N -0.89 -25.49 11.32 55.43 0.63 -24.86 16 18 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 C 0.05 0.74 5.02 -1.89 -0.01 0.73 16 23 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.62 6.68 -51.93 -0.35 0.27 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.51 7.97 -51.93 -0.41 0.10 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.04 0.48 7.67 -51.93 -0.40 0.09 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.12 7.61 -51.93 -0.39 0.73 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.33 6.86 7.67 -39.29 -0.30 6.56 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 37 H 0.01 0.12 7.45 -51.93 -0.39 -0.27 16 38 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.08 1.30 7.56 -51.93 -0.39 0.91 16 40 H 0.04 0.66 8.01 -51.93 -0.42 0.25 16 LS Contribution 315.97 15.07 4.76 4.76 Total: -1.00 -29.19 315.97 -8.20 -37.40 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -7.06 Total: 3.18 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 0.69 Total: -7.60 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -1.20 Total: -48.69 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.37 Total: -5.29 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.19 -8.20 -37.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379925462.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.213 kcal (2) G-P(sol) polarization free energy of solvation -29.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds