Wall clock time and date at job start Mon Mar 30 2020 05:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00563 * 2 1 4 4 C 1.52993 * 109.47377 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47296 * 64.14406 * 4 3 2 6 6 C 1.47904 * 111.00271 * 175.78974 * 5 4 3 7 7 C 1.53992 * 107.05898 * 214.16261 * 6 5 4 8 8 C 1.54592 * 105.13952 * 1.22033 * 7 6 5 9 9 H 1.08994 * 110.73115 * 263.42149 * 8 7 6 10 10 N 1.46904 * 110.72100 * 140.31861 * 8 7 6 11 11 C 1.46900 * 111.00118 * 86.45773 * 10 8 7 12 12 H 1.09000 * 109.46953 * 324.99521 * 11 10 8 13 13 C 1.53000 * 109.47477 * 84.99796 * 11 10 8 14 14 C 1.50700 * 109.46921 * 205.00162 * 11 10 8 15 15 H 1.07993 * 120.00137 * 359.97438 * 14 11 10 16 16 C 1.37887 * 119.99575 * 179.97438 * 14 11 10 17 17 N 1.31506 * 120.00063 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 119.99548 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.47297 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47024 * 119.99859 * 18 16 14 21 21 H 1.48504 * 109.46494 * 239.99675 * 18 16 14 22 22 C 1.48539 * 110.99479 * 58.39513 * 5 4 3 23 23 H 1.08998 * 109.46677 * 300.00213 * 1 2 3 24 24 H 1.09001 * 109.46752 * 59.99280 * 1 2 3 25 25 H 1.09001 * 109.47614 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46960 * 300.00106 * 3 2 1 27 27 H 1.09006 * 109.46788 * 60.00107 * 3 2 1 28 28 H 1.09003 * 109.47534 * 184.14928 * 4 3 2 29 29 H 1.09000 * 109.47332 * 304.15016 * 4 3 2 30 30 H 1.09001 * 109.91477 * 333.51043 * 6 5 4 31 31 H 1.08996 * 109.91631 * 94.61040 * 6 5 4 32 32 H 1.09001 * 110.31002 * 120.14468 * 7 6 5 33 33 H 1.09005 * 110.30175 * 242.20995 * 7 6 5 34 34 H 1.00902 * 111.00018 * 322.49743 * 10 8 7 35 35 H 1.09003 * 109.46764 * 59.99961 * 13 11 10 36 36 H 1.08994 * 109.47172 * 179.97438 * 13 11 10 37 37 H 1.08999 * 109.46979 * 300.00277 * 13 11 10 38 38 H 0.97006 * 120.00197 * 180.02562 * 17 16 14 39 39 H 1.08999 * 110.66888 * 278.15194 * 22 5 4 40 40 H 1.09002 * 110.66738 * 41.29202 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9754 0.5439 -1.2473 6 6 5.4516 0.5006 -1.3288 7 6 5.8272 0.6675 -2.8128 8 6 4.4809 0.8381 -3.5533 9 1 4.1449 -0.1127 -3.9668 10 7 4.5941 1.8515 -4.6107 11 6 5.0834 1.2555 -5.8610 12 1 5.7978 0.4649 -5.6314 13 6 3.9057 0.6679 -6.6411 14 6 5.7579 2.3159 -6.6927 15 1 5.8168 3.3310 -6.3291 16 6 6.2999 1.9898 -7.9180 17 7 6.2286 0.7535 -8.3605 18 14 7.1353 3.3044 -8.9493 19 1 7.0822 4.6039 -8.2325 20 1 8.5518 2.9246 -9.1824 21 1 6.4353 3.4297 -10.2530 22 6 3.5271 1.3203 -2.4316 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.6887 1.8463 -0.8900 27 1 1.6887 1.8463 0.8901 28 1 3.9788 2.1775 0.0737 29 1 3.8525 0.5806 0.8496 30 1 5.8798 1.3145 -0.7436 31 1 5.8161 -0.4565 -0.9557 32 1 6.4486 1.5527 -2.9486 33 1 6.3491 -0.2192 -3.1729 34 1 5.1857 2.6148 -4.3182 35 1 3.1913 1.4585 -6.8707 36 1 4.2687 0.2260 -7.5690 37 1 3.4179 -0.0991 -6.0395 38 1 6.6102 0.5240 -9.2223 39 1 2.4923 1.0828 -2.6781 40 1 3.6468 2.3898 -2.2583 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379925462.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:33 Heat of formation + Delta-G solvation = -61.148602 kcal Electronic energy + Delta-G solvation = -18029.684417 eV Core-core repulsion = 15264.500078 eV Total energy + Delta-G solvation = -2765.184339 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.35626 -38.60417 -37.11217 -34.64126 -32.75078 -30.52326 -29.29809 -28.04786 -27.19868 -26.74927 -23.54925 -22.37478 -21.50591 -21.17000 -18.58367 -17.53751 -17.25373 -17.08860 -16.49993 -16.14521 -15.69377 -15.53005 -14.78152 -14.67644 -14.44763 -14.15678 -13.78490 -13.38617 -13.19596 -13.01825 -12.90274 -12.71234 -12.48618 -12.36095 -12.19949 -12.13734 -12.06007 -11.81351 -11.73183 -11.46751 -10.87762 -10.57720 -10.51251 -9.31284 -9.01640 -8.12911 -6.27160 1.41493 1.43355 1.54974 2.41515 2.87984 3.06080 3.16210 3.55494 3.73439 4.02569 4.07564 4.20014 4.27056 4.36841 4.46170 4.53530 4.57378 4.61761 4.65999 4.74722 4.84340 4.88102 4.90313 4.93115 5.00040 5.08669 5.13633 5.20451 5.23977 5.49428 5.67537 5.83392 5.93987 6.09940 6.22078 6.38564 6.48464 6.78294 7.01466 7.43430 8.93130 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.040136 B = 0.004603 C = 0.004410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.463728 B = 6081.170359 C = 6347.677200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.404 6.404 3 C 0.062 3.938 4 C 0.048 3.952 5 N -0.524 5.524 6 C 0.048 3.952 7 C -0.155 4.155 8 C 0.085 3.915 9 H 0.060 0.940 10 N -0.676 5.676 11 C 0.219 3.781 12 H -0.029 1.029 13 C -0.114 4.114 14 C -0.536 4.536 15 H 0.060 0.940 16 C 0.013 3.987 17 N -0.918 5.918 18 Si 0.963 3.037 19 H -0.265 1.265 20 H -0.281 1.281 21 H -0.281 1.281 22 C 0.063 3.937 23 H 0.054 0.946 24 H 0.039 0.961 25 H 0.090 0.910 26 H 0.046 0.954 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.334 0.666 35 H 0.028 0.972 36 H 0.056 0.944 37 H 0.017 0.983 38 H 0.262 0.738 39 H 0.072 0.928 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.482 1.787 17.099 18.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C -0.015 4.015 4 C -0.080 4.080 5 N -0.249 5.249 6 C -0.080 4.080 7 C -0.195 4.195 8 C -0.027 4.027 9 H 0.078 0.922 10 N -0.306 5.306 11 C 0.110 3.890 12 H -0.012 1.012 13 C -0.172 4.172 14 C -0.574 4.574 15 H 0.078 0.922 16 C -0.186 4.186 17 N -0.558 5.558 18 Si 0.788 3.212 19 H -0.190 1.190 20 H -0.207 1.207 21 H -0.207 1.207 22 C -0.065 4.065 23 H 0.073 0.927 24 H 0.058 0.942 25 H 0.109 0.891 26 H 0.064 0.936 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.107 0.893 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.152 0.848 35 H 0.047 0.953 36 H 0.075 0.925 37 H 0.036 0.964 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.218 0.951 16.773 18.285 hybrid contribution 1.537 1.137 -0.723 2.044 sum -5.681 2.089 16.050 17.153 Atomic orbital electron populations 1.22866 0.80318 1.03394 1.00455 1.87957 1.20593 1.28285 1.95448 1.22666 0.93043 0.84899 1.00898 1.22396 0.94199 0.98506 0.92914 1.64752 1.09230 1.48802 1.02108 1.22742 0.88108 1.02015 0.95112 1.23070 0.98467 1.01736 0.96243 1.22406 0.94101 0.94911 0.91247 0.92191 1.60608 1.56144 1.10407 1.03486 1.18858 0.90936 0.92726 0.86437 1.01151 1.21560 0.97496 0.97775 1.00399 1.21609 1.36169 0.95810 1.03830 0.92180 1.25741 0.96637 0.97472 0.98786 1.70038 1.46085 1.19246 1.20404 0.85432 0.77900 0.79388 0.78432 1.18956 1.20671 1.20671 1.22955 0.98674 0.95674 0.89187 0.92750 0.94199 0.89136 0.93552 0.90838 0.91796 0.89349 0.92321 0.90037 0.91621 0.92562 0.84837 0.95284 0.92498 0.96363 0.92871 0.90927 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.71 16 2 O -0.40 -9.93 10.64 -148.98 -1.58 -11.52 16 3 C 0.06 1.26 5.88 71.98 0.42 1.68 16 4 C 0.05 1.02 5.23 86.30 0.45 1.47 16 5 N -0.52 -14.47 5.29 -883.00 -4.67 -19.14 16 6 C 0.05 1.27 6.70 86.45 0.58 1.85 16 7 C -0.16 -5.08 6.46 31.47 0.20 -4.88 16 8 C 0.08 3.15 3.13 46.12 0.14 3.29 16 9 H 0.06 2.51 7.22 -2.39 -0.02 2.49 16 10 N -0.68 -28.92 6.16 -467.15 -2.88 -31.79 16 11 C 0.22 11.33 2.47 44.17 0.11 11.44 16 12 H -0.03 -1.67 7.75 -2.39 -0.02 -1.69 16 13 C -0.11 -5.88 9.18 71.98 0.66 -5.22 16 14 C -0.54 -29.53 8.59 25.60 0.22 -29.31 16 15 H 0.06 3.23 7.62 -2.91 -0.02 3.21 16 16 C 0.01 0.71 5.30 84.66 0.45 1.16 16 17 N -0.92 -53.42 11.32 21.45 0.24 -53.18 16 18 Si 0.96 43.50 29.54 68.60 2.03 45.53 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 C 0.06 1.94 5.02 86.65 0.44 2.37 16 23 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.05 1.00 6.68 -2.39 -0.02 0.98 16 27 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 28 H 0.06 1.17 7.97 -2.39 -0.02 1.15 16 29 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.06 1.32 7.67 -2.39 -0.02 1.30 16 31 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.07 2.15 7.61 -2.39 -0.02 2.14 16 33 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.33 13.77 7.67 -89.69 -0.69 13.08 16 35 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.06 3.20 6.07 -2.39 -0.01 3.18 16 37 H 0.02 0.84 7.45 -2.39 -0.02 0.82 16 38 H 0.26 14.43 8.31 -92.70 -0.77 13.65 16 39 H 0.07 2.33 7.56 -2.39 -0.02 2.31 16 40 H 0.05 1.49 8.01 -2.39 -0.02 1.47 16 Total: -1.00 -62.14 315.97 -1.63 -63.76 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.31 Total: 20.78 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: 4.92 Total: -14.44 kcal Atomic # 7 Polarization: -96.81 SS G_CDS: -7.30 Total: -104.11 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: -1.58 Total: -11.52 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -62.14 -1.63 -63.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379925462.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.616 kcal (2) G-P(sol) polarization free energy of solvation -62.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds