Wall clock time and date at job start Mon Mar 30 2020 05:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42905 * 113.99989 * 2 1 4 4 C 1.52999 * 109.47177 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.47006 * 65.00183 * 4 3 2 6 6 C 1.47902 * 110.99745 * 69.87130 * 5 4 3 7 7 C 1.53996 * 107.05409 * 145.84466 * 6 5 4 8 8 C 1.54596 * 105.14310 * 358.77575 * 7 6 5 9 9 H 1.08999 * 110.72245 * 96.57784 * 8 7 6 10 10 N 1.46901 * 110.72173 * 219.68514 * 8 7 6 11 11 C 1.46896 * 110.99913 * 273.54139 * 10 8 7 12 12 H 1.09002 * 109.47220 * 325.00418 * 11 10 8 13 13 C 1.52997 * 109.46848 * 85.00348 * 11 10 8 14 14 C 1.50701 * 109.47239 * 205.00362 * 11 10 8 15 15 H 1.07999 * 119.99742 * 0.02562 * 14 11 10 16 16 C 1.37875 * 120.00221 * 180.02562 * 14 11 10 17 17 N 1.31519 * 119.99615 * 359.97438 * 16 14 11 18 18 Si 1.86792 * 119.99983 * 179.97438 * 16 14 11 19 19 H 1.48505 * 109.47285 * 89.99870 * 18 16 14 20 20 H 1.48503 * 109.47250 * 209.99665 * 18 16 14 21 21 H 1.48499 * 109.47267 * 329.99827 * 18 16 14 22 22 C 1.48529 * 111.00143 * 187.26917 * 5 4 3 23 23 H 1.09001 * 109.46899 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47083 * 299.99971 * 1 2 3 25 25 H 1.08992 * 109.46840 * 59.99857 * 1 2 3 26 26 H 1.09002 * 109.46639 * 60.00131 * 3 2 1 27 27 H 1.08997 * 109.47167 * 300.00178 * 3 2 1 28 28 H 1.08998 * 109.47124 * 305.00286 * 4 3 2 29 29 H 1.08994 * 109.46738 * 184.99924 * 4 3 2 30 30 H 1.09001 * 109.91702 * 26.49253 * 6 5 4 31 31 H 1.09001 * 109.92130 * 265.19462 * 6 5 4 32 32 H 1.08998 * 110.30642 * 239.85913 * 7 6 5 33 33 H 1.09002 * 110.30647 * 117.69188 * 7 6 5 34 34 H 1.00902 * 110.99781 * 149.59068 * 10 8 7 35 35 H 1.09002 * 109.47153 * 60.00028 * 13 11 10 36 36 H 1.08998 * 109.47533 * 179.97438 * 13 11 10 37 37 H 1.08996 * 109.47853 * 300.00000 * 13 11 10 38 38 H 0.96997 * 119.99545 * 180.02562 * 17 16 14 39 39 H 1.09002 * 110.66554 * 81.84336 * 22 5 4 40 40 H 1.09002 * 110.66386 * 318.71457 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9779 0.5624 -1.2543 6 6 3.7787 1.4777 -2.3989 7 6 4.9322 1.2232 -3.3868 8 6 5.8053 0.1372 -2.7172 9 1 5.5479 -0.8521 -3.0956 10 7 7.2324 0.4163 -2.9253 11 6 7.6986 -0.1469 -4.1994 12 1 7.1787 -1.0850 -4.3939 13 6 7.4078 0.8413 -5.3306 14 6 9.1821 -0.4011 -4.1235 15 1 9.7243 -0.1680 -3.2190 16 6 9.8472 -0.9313 -5.2086 17 7 9.1868 -1.2156 -6.3099 18 14 11.6860 -1.2456 -5.1147 19 1 11.9280 -2.6208 -4.6090 20 1 12.2823 -1.1036 -6.4673 21 1 12.3099 -0.2625 -4.1930 22 6 5.4336 0.2692 -1.2189 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8899 26 1 1.6886 1.8463 0.8900 27 1 1.6887 1.8464 -0.8899 28 1 3.8508 0.5685 0.8427 29 1 3.9784 2.1766 0.0902 30 1 3.8048 2.5121 -2.0560 31 1 2.8239 1.2674 -2.8808 32 1 5.5107 2.1349 -3.5359 33 1 4.5425 0.8617 -4.3384 34 1 7.7844 0.0717 -2.1542 35 1 7.9277 1.7794 -5.1361 36 1 7.7540 0.4237 -6.2760 37 1 6.3348 1.0253 -5.3856 38 1 9.6546 -1.5889 -7.0732 39 1 5.6250 -0.6652 -0.6913 40 1 5.9805 1.0916 -0.7578 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379925479.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:38 Heat of formation + Delta-G solvation = -38.700507 kcal Electronic energy + Delta-G solvation = -17910.416244 eV Core-core repulsion = 15146.205328 eV Total energy + Delta-G solvation = -2764.210917 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.07355 -37.64105 -35.42169 -32.84532 -31.18146 -29.08355 -28.44282 -26.47638 -25.80533 -24.89848 -22.73046 -20.64923 -20.20293 -19.35621 -16.65915 -16.48197 -16.22196 -15.69170 -15.17840 -14.83228 -14.70571 -13.80031 -13.54358 -13.44674 -13.11277 -12.62339 -12.36778 -12.21615 -11.61751 -11.49735 -11.32910 -11.01502 -11.00377 -10.91777 -10.77735 -10.63068 -10.41332 -10.05138 -9.97089 -9.77487 -9.70096 -8.77029 -8.44079 -8.23233 -7.29194 -6.00152 -4.06717 3.30801 3.37370 3.41120 3.70808 4.07121 4.42526 4.87625 4.94413 5.09885 5.17990 5.19534 5.25647 5.26112 5.32513 5.42385 5.47563 5.49373 5.56638 5.73086 5.80691 5.91509 6.05872 6.25971 6.36774 6.56118 6.66244 6.94218 7.02553 7.07179 7.20077 7.26033 7.29026 7.56254 7.80760 7.93521 8.30444 8.42261 8.70302 9.04176 9.59146 11.06023 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.053866 B = 0.004139 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.681297 B = 6763.465756 C = 6906.688665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.374 6.374 3 C 0.068 3.932 4 C 0.047 3.953 5 N -0.508 5.508 6 C 0.037 3.963 7 C -0.117 4.117 8 C 0.087 3.913 9 H 0.050 0.950 10 N -0.682 5.682 11 C 0.212 3.788 12 H 0.002 0.998 13 C -0.126 4.126 14 C -0.519 4.519 15 H 0.059 0.941 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.896 3.104 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.036 3.964 23 H 0.084 0.916 24 H 0.035 0.965 25 H 0.038 0.962 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.038 0.962 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.331 0.669 35 H 0.028 0.972 36 H 0.078 0.922 37 H 0.010 0.990 38 H 0.260 0.740 39 H 0.077 0.923 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.982 5.208 10.799 18.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.292 6.292 3 C -0.009 4.009 4 C -0.081 4.081 5 N -0.232 5.232 6 C -0.091 4.091 7 C -0.156 4.156 8 C -0.024 4.024 9 H 0.067 0.933 10 N -0.313 5.313 11 C 0.105 3.895 12 H 0.019 0.981 13 C -0.184 4.184 14 C -0.558 4.558 15 H 0.077 0.923 16 C -0.140 4.140 17 N -0.528 5.528 18 Si 0.724 3.276 19 H -0.208 1.208 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.092 4.092 23 H 0.102 0.898 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.100 0.900 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.149 0.851 35 H 0.048 0.952 36 H 0.097 0.903 37 H 0.029 0.971 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.257 5.121 10.285 18.311 hybrid contribution 1.198 -0.093 0.273 1.233 sum -13.059 5.028 10.559 17.530 Atomic orbital electron populations 1.22711 0.81886 1.02563 0.99442 1.88023 1.18720 1.27251 1.95199 1.22527 0.93650 0.85113 0.99606 1.22285 0.93536 0.98205 0.94107 1.64703 1.16244 1.40115 1.02150 1.22924 0.99672 0.94037 0.92484 1.22501 0.95101 1.00345 0.97671 1.22357 0.90803 0.96812 0.92466 0.93259 1.60812 1.00101 1.63747 1.06665 1.19145 0.94357 0.91395 0.84612 0.98068 1.21770 0.96059 0.98713 1.01878 1.21285 0.93123 1.41654 0.99707 0.92275 1.24920 0.98377 0.95407 0.95326 1.69906 1.35686 1.43669 1.03573 0.86529 0.85269 0.78487 0.77290 1.20764 1.21238 1.19887 1.23348 0.87323 1.00703 0.97846 0.89795 0.94619 0.94349 0.93412 0.93364 0.90038 0.93199 0.94321 0.91091 0.90399 0.91675 0.85093 0.95236 0.90325 0.97130 0.92962 0.90501 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.37 -4.74 10.65 -35.23 -0.38 -5.12 16 3 C 0.07 0.73 6.08 37.16 0.23 0.96 16 4 C 0.05 0.56 5.14 -3.82 -0.02 0.55 16 5 N -0.51 -7.46 5.21 -230.45 -1.20 -8.66 16 6 C 0.04 0.53 5.72 -2.75 -0.02 0.51 16 7 C -0.12 -1.99 4.98 -25.37 -0.13 -2.12 16 8 C 0.09 1.62 3.35 -65.85 -0.22 1.40 16 9 H 0.05 1.02 7.53 -51.93 -0.39 0.63 16 10 N -0.68 -14.60 6.14 -99.01 -0.61 -15.20 16 11 C 0.21 5.43 2.60 -68.87 -0.18 5.25 16 12 H 0.00 0.05 7.49 -51.93 -0.39 -0.34 16 13 C -0.13 -3.15 8.99 37.16 0.33 -2.82 16 14 C -0.52 -14.36 8.59 -34.44 -0.30 -14.65 16 15 H 0.06 1.61 7.62 -52.49 -0.40 1.21 16 16 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 17 N -0.89 -25.69 11.32 55.43 0.63 -25.06 16 18 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 C 0.04 0.56 5.97 -1.90 -0.01 0.55 16 23 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.50 7.37 -51.93 -0.38 0.12 16 28 H 0.08 0.96 8.11 -51.93 -0.42 0.54 16 29 H 0.05 0.54 7.81 -51.93 -0.41 0.13 16 30 H 0.04 0.50 7.57 -51.93 -0.39 0.11 16 31 H 0.07 0.97 8.12 -51.93 -0.42 0.55 16 32 H 0.08 1.39 8.02 -51.93 -0.42 0.97 16 33 H 0.06 1.13 7.54 -51.93 -0.39 0.74 16 34 H 0.33 6.91 7.99 -39.29 -0.31 6.60 16 35 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 37 H 0.01 0.22 5.95 -51.93 -0.31 -0.09 16 38 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.05 0.77 8.02 -51.93 -0.42 0.36 16 LS Contribution 314.31 15.07 4.74 4.74 Total: -1.00 -29.63 314.31 -8.17 -37.80 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -7.04 Total: 2.48 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 0.71 Total: -7.36 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: -1.18 Total: -48.93 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: -0.38 Total: -5.12 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.63 -8.17 -37.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379925479.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.904 kcal (2) G-P(sol) polarization free energy of solvation -29.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds