Wall clock time and date at job start Mon Mar 30 2020 05:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42905 * 113.99989 * 2 1 4 4 C 1.52999 * 109.47177 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.47006 * 65.00183 * 4 3 2 6 6 C 1.47902 * 110.99745 * 69.87130 * 5 4 3 7 7 C 1.53996 * 107.05409 * 145.84466 * 6 5 4 8 8 C 1.54596 * 105.14310 * 358.77575 * 7 6 5 9 9 H 1.08999 * 110.72245 * 96.57784 * 8 7 6 10 10 N 1.46901 * 110.72173 * 219.68514 * 8 7 6 11 11 C 1.46896 * 110.99913 * 273.54139 * 10 8 7 12 12 H 1.09002 * 109.47220 * 325.00418 * 11 10 8 13 13 C 1.52997 * 109.46848 * 85.00348 * 11 10 8 14 14 C 1.50701 * 109.47239 * 205.00362 * 11 10 8 15 15 H 1.07999 * 119.99742 * 0.02562 * 14 11 10 16 16 C 1.37875 * 120.00221 * 180.02562 * 14 11 10 17 17 N 1.31519 * 119.99615 * 359.97438 * 16 14 11 18 18 Si 1.86792 * 119.99983 * 179.97438 * 16 14 11 19 19 H 1.48505 * 109.47285 * 89.99870 * 18 16 14 20 20 H 1.48503 * 109.47250 * 209.99665 * 18 16 14 21 21 H 1.48499 * 109.47267 * 329.99827 * 18 16 14 22 22 C 1.48529 * 111.00143 * 187.26917 * 5 4 3 23 23 H 1.09001 * 109.46899 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47083 * 299.99971 * 1 2 3 25 25 H 1.08992 * 109.46840 * 59.99857 * 1 2 3 26 26 H 1.09002 * 109.46639 * 60.00131 * 3 2 1 27 27 H 1.08997 * 109.47167 * 300.00178 * 3 2 1 28 28 H 1.08998 * 109.47124 * 305.00286 * 4 3 2 29 29 H 1.08994 * 109.46738 * 184.99924 * 4 3 2 30 30 H 1.09001 * 109.91702 * 26.49253 * 6 5 4 31 31 H 1.09001 * 109.92130 * 265.19462 * 6 5 4 32 32 H 1.08998 * 110.30642 * 239.85913 * 7 6 5 33 33 H 1.09002 * 110.30647 * 117.69188 * 7 6 5 34 34 H 1.00902 * 110.99781 * 149.59068 * 10 8 7 35 35 H 1.09002 * 109.47153 * 60.00028 * 13 11 10 36 36 H 1.08998 * 109.47533 * 179.97438 * 13 11 10 37 37 H 1.08996 * 109.47853 * 300.00000 * 13 11 10 38 38 H 0.96997 * 119.99545 * 180.02562 * 17 16 14 39 39 H 1.09002 * 110.66554 * 81.84336 * 22 5 4 40 40 H 1.09002 * 110.66386 * 318.71457 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9779 0.5624 -1.2543 6 6 3.7787 1.4777 -2.3989 7 6 4.9322 1.2232 -3.3868 8 6 5.8053 0.1372 -2.7172 9 1 5.5479 -0.8521 -3.0956 10 7 7.2324 0.4163 -2.9253 11 6 7.6986 -0.1469 -4.1994 12 1 7.1787 -1.0850 -4.3939 13 6 7.4078 0.8413 -5.3306 14 6 9.1821 -0.4011 -4.1235 15 1 9.7243 -0.1680 -3.2190 16 6 9.8472 -0.9313 -5.2086 17 7 9.1868 -1.2156 -6.3099 18 14 11.6860 -1.2456 -5.1147 19 1 11.9280 -2.6208 -4.6090 20 1 12.2823 -1.1036 -6.4673 21 1 12.3099 -0.2625 -4.1930 22 6 5.4336 0.2692 -1.2189 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8899 26 1 1.6886 1.8463 0.8900 27 1 1.6887 1.8464 -0.8899 28 1 3.8508 0.5685 0.8427 29 1 3.9784 2.1766 0.0902 30 1 3.8048 2.5121 -2.0560 31 1 2.8239 1.2674 -2.8808 32 1 5.5107 2.1349 -3.5359 33 1 4.5425 0.8617 -4.3384 34 1 7.7844 0.0717 -2.1542 35 1 7.9277 1.7794 -5.1361 36 1 7.7540 0.4237 -6.2760 37 1 6.3348 1.0253 -5.3856 38 1 9.6546 -1.5889 -7.0732 39 1 5.6250 -0.6652 -0.6913 40 1 5.9805 1.0916 -0.7578 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379925479.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:38 Heat of formation + Delta-G solvation = -60.784643 kcal Electronic energy + Delta-G solvation = -17911.373884 eV Core-core repulsion = 15146.205328 eV Total energy + Delta-G solvation = -2765.168557 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.28924 -38.61025 -37.11683 -34.61780 -32.64683 -30.64429 -29.67936 -27.78879 -27.19752 -26.58344 -23.75458 -22.10394 -21.86221 -20.84156 -18.50429 -17.54361 -17.23215 -16.96804 -16.71221 -16.21585 -15.76197 -15.51026 -14.87648 -14.76833 -14.71123 -13.98700 -13.61583 -13.40492 -13.17863 -12.87116 -12.79259 -12.71988 -12.43755 -12.39141 -12.19622 -12.15358 -11.99578 -11.84256 -11.66872 -11.37459 -10.83627 -10.55823 -10.50966 -9.33352 -9.12323 -8.12938 -6.27729 1.42367 1.43214 1.54150 2.41487 2.89322 3.00772 3.15671 3.68286 3.75015 3.83419 4.17320 4.22680 4.29401 4.35594 4.51096 4.54392 4.58810 4.63040 4.66271 4.71763 4.85126 4.89810 4.91774 4.97329 4.99105 5.09145 5.22387 5.23957 5.25641 5.50088 5.67416 5.84250 5.92772 6.08548 6.23147 6.39976 6.48047 6.78021 7.00297 7.42874 8.92691 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.053866 B = 0.004139 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.681297 B = 6763.465756 C = 6906.688665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.407 6.407 3 C 0.068 3.932 4 C 0.045 3.955 5 N -0.522 5.522 6 C 0.047 3.953 7 C -0.114 4.114 8 C 0.081 3.919 9 H 0.022 0.978 10 N -0.674 5.674 11 C 0.218 3.782 12 H -0.036 1.036 13 C -0.113 4.113 14 C -0.540 4.540 15 H 0.061 0.939 16 C 0.011 3.989 17 N -0.919 5.919 18 Si 0.965 3.035 19 H -0.276 1.276 20 H -0.283 1.283 21 H -0.267 1.267 22 C 0.049 3.951 23 H 0.088 0.912 24 H 0.053 0.947 25 H 0.043 0.957 26 H 0.072 0.928 27 H 0.051 0.949 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.334 0.666 35 H 0.026 0.974 36 H 0.052 0.948 37 H 0.028 0.972 38 H 0.262 0.738 39 H 0.077 0.923 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.338 6.235 12.241 19.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.326 6.326 3 C -0.009 4.009 4 C -0.083 4.083 5 N -0.247 5.247 6 C -0.081 4.081 7 C -0.153 4.153 8 C -0.030 4.030 9 H 0.040 0.960 10 N -0.305 5.305 11 C 0.109 3.891 12 H -0.018 1.018 13 C -0.171 4.171 14 C -0.578 4.578 15 H 0.079 0.921 16 C -0.188 4.188 17 N -0.558 5.558 18 Si 0.790 3.210 19 H -0.201 1.201 20 H -0.209 1.209 21 H -0.191 1.191 22 C -0.079 4.079 23 H 0.106 0.894 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.151 0.849 35 H 0.045 0.955 36 H 0.071 0.929 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.634 6.159 11.749 19.752 hybrid contribution 1.230 -0.426 -0.159 1.312 sum -13.404 5.733 11.590 18.624 Atomic orbital electron populations 1.22859 0.80269 1.03315 1.00540 1.87971 1.20655 1.28504 1.95461 1.22595 0.92616 0.84738 1.00928 1.22396 0.94619 0.98783 0.92491 1.64707 1.15122 1.41210 1.03621 1.22842 0.98489 0.95089 0.91686 1.22425 0.95756 0.99092 0.98041 1.22397 0.89258 0.96080 0.95272 0.96006 1.60749 1.01735 1.62898 1.05145 1.18935 0.93417 0.90038 0.86676 1.01840 1.21579 0.97108 0.98014 1.00402 1.21628 0.94230 1.41992 0.99957 0.92094 1.25768 1.03022 0.95066 0.94921 1.70042 1.37472 1.44111 1.04175 0.85457 0.79616 0.78541 0.77398 1.20141 1.20886 1.19093 1.23168 0.88405 1.01180 0.95158 0.89362 0.92878 0.93816 0.90948 0.93075 0.90028 0.91559 0.92293 0.90397 0.91080 0.92700 0.84852 0.95465 0.92870 0.95276 0.92865 0.90437 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.41 -9.55 10.65 -148.98 -1.59 -11.14 16 3 C 0.07 1.27 6.08 71.98 0.44 1.71 16 4 C 0.05 0.96 5.14 86.30 0.44 1.40 16 5 N -0.52 -14.41 5.21 -883.02 -4.60 -19.01 16 6 C 0.05 1.24 5.72 86.45 0.49 1.74 16 7 C -0.11 -3.81 4.98 31.47 0.16 -3.65 16 8 C 0.08 3.03 3.35 46.12 0.15 3.19 16 9 H 0.02 0.94 7.53 -2.39 -0.02 0.93 16 10 N -0.67 -29.08 6.14 -467.16 -2.87 -31.95 16 11 C 0.22 11.42 2.60 44.17 0.11 11.53 16 12 H -0.04 -2.12 7.49 -2.39 -0.02 -2.14 16 13 C -0.11 -5.74 8.99 71.98 0.65 -5.10 16 14 C -0.54 -30.16 8.59 25.60 0.22 -29.94 16 15 H 0.06 3.30 7.62 -2.91 -0.02 3.28 16 16 C 0.01 0.64 5.30 84.65 0.45 1.08 16 17 N -0.92 -53.96 11.32 21.45 0.24 -53.72 16 18 Si 0.96 43.93 29.54 68.60 2.03 45.95 16 19 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 C 0.05 1.48 5.97 86.65 0.52 2.00 16 23 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.05 0.92 7.37 -2.39 -0.02 0.90 16 28 H 0.08 1.73 8.11 -2.39 -0.02 1.71 16 29 H 0.07 1.20 7.81 -2.39 -0.02 1.19 16 30 H 0.06 1.34 7.57 -2.39 -0.02 1.32 16 31 H 0.08 1.98 8.12 -2.39 -0.02 1.96 16 32 H 0.07 2.46 8.02 -2.39 -0.02 2.44 16 33 H 0.05 1.90 7.54 -2.39 -0.02 1.89 16 34 H 0.33 13.95 7.99 -89.69 -0.72 13.24 16 35 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.05 2.98 6.07 -2.39 -0.01 2.96 16 37 H 0.03 1.32 5.95 -2.39 -0.01 1.30 16 38 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 39 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.06 1.70 8.02 -2.39 -0.02 1.68 16 Total: -1.00 -63.53 314.31 -1.63 -65.16 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.28 Total: 19.08 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: 4.88 Total: -14.37 kcal Atomic # 7 Polarization: -97.45 SS G_CDS: -7.23 Total: -104.69 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -1.59 Total: -11.14 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -63.53 -1.63 -65.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379925479.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.371 kcal (2) G-P(sol) polarization free energy of solvation -63.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds