Wall clock time and date at job start Mon Mar 30 2020 05:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46841 * 2 1 4 4 C 1.50697 * 109.47359 * 239.99328 * 2 1 3 5 5 H 1.08004 * 120.00061 * 245.45966 * 4 2 1 6 6 C 1.37878 * 119.99998 * 65.45881 * 4 2 1 7 7 N 1.31514 * 119.99946 * 9.55671 * 6 4 2 8 8 Si 1.86803 * 119.99957 * 189.54890 * 6 4 2 9 9 H 1.48503 * 109.46832 * 84.99737 * 8 6 4 10 10 H 1.48500 * 109.47119 * 204.99524 * 8 6 4 11 11 H 1.48495 * 109.46967 * 325.00141 * 8 6 4 12 12 N 1.46908 * 109.46716 * 119.99201 * 2 1 3 13 13 C 1.46901 * 110.99930 * 274.99957 * 12 2 1 14 14 C 1.52993 * 109.46892 * 180.02562 * 13 12 2 15 15 O 1.42909 * 109.52390 * 300.12675 * 14 13 12 16 16 C 1.53116 * 109.57508 * 60.29940 * 14 13 12 17 17 C 1.53038 * 109.28009 * 177.60116 * 16 14 13 18 18 N 1.46848 * 109.51720 * 300.80551 * 17 16 14 19 19 C 1.46896 * 111.00492 * 185.84364 * 18 17 16 20 20 C 1.46847 * 111.19640 * 61.74128 * 18 17 16 21 21 C 1.53035 * 109.52636 * 298.26446 * 20 18 17 22 22 H 1.08995 * 109.47667 * 303.69737 * 1 2 3 23 23 H 1.09004 * 109.47332 * 63.70182 * 1 2 3 24 24 H 1.09002 * 109.47223 * 183.69449 * 1 2 3 25 25 H 0.96994 * 120.00244 * 180.02562 * 7 6 4 26 26 H 1.00895 * 111.00000 * 38.95738 * 12 2 1 27 27 H 1.09007 * 109.46935 * 60.00453 * 13 12 2 28 28 H 1.08997 * 109.47333 * 300.00646 * 13 12 2 29 29 H 0.96700 * 113.99281 * 59.87888 * 15 14 13 30 30 H 1.08999 * 109.51404 * 57.65462 * 16 14 13 31 31 H 1.08996 * 109.49537 * 297.53272 * 16 14 13 32 32 H 1.08997 * 109.46547 * 180.79637 * 17 16 14 33 33 H 1.09004 * 109.46246 * 60.81616 * 17 16 14 34 34 H 1.09006 * 109.46744 * 59.99882 * 19 18 17 35 35 H 1.08998 * 109.47157 * 179.97438 * 19 18 17 36 36 H 1.08995 * 109.46815 * 300.00044 * 19 18 17 37 37 H 1.09006 * 109.45966 * 58.28432 * 20 18 17 38 38 H 1.09003 * 109.46387 * 178.25277 * 20 18 17 39 39 H 1.09008 * 109.50172 * 179.12128 * 21 20 18 40 40 H 1.09000 * 109.49992 * 299.23515 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.5787 -1.6372 -1.1336 6 6 1.7946 -0.1777 -2.4796 7 7 1.2992 1.0353 -2.5936 8 14 2.1764 -1.1784 -4.0100 9 1 1.0245 -2.0616 -4.3239 10 1 2.4230 -0.2619 -5.1520 11 1 3.3848 -2.0075 -3.7705 12 7 2.0196 -0.6924 1.1996 13 6 2.0824 0.2229 2.3469 14 6 2.5960 -0.5324 3.5743 15 8 1.7119 -1.6146 3.8737 16 6 3.9975 -1.0798 3.2904 17 6 4.5288 -1.7821 4.5420 18 7 4.5733 -0.8287 5.6579 19 6 5.2074 -1.4296 6.8389 20 6 3.2320 -0.3251 5.9798 21 6 2.6619 0.4204 4.7710 22 1 -0.3634 0.5701 0.8549 23 1 -0.3634 0.4553 -0.9213 24 1 -0.3634 -1.0255 0.0662 25 1 1.1316 1.4100 -3.4724 26 1 1.4495 -1.4978 1.4103 27 1 1.0869 0.6166 2.5525 28 1 2.7587 1.0465 2.1182 29 1 1.6222 -2.2586 3.1579 30 1 4.6623 -0.2581 3.0243 31 1 3.9499 -1.7916 2.4663 32 1 5.5323 -2.1607 4.3477 33 1 3.8710 -2.6122 4.7995 34 1 6.2268 -1.7267 6.5922 35 1 5.2277 -0.7019 7.6502 36 1 4.6388 -2.3058 7.1503 37 1 2.5804 -1.1621 6.2308 38 1 3.2935 0.3547 6.8297 39 1 1.6600 0.7807 5.0050 40 1 3.3056 1.2658 4.5281 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379947941.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:25 Heat of formation + Delta-G solvation = -54.460928 kcal Electronic energy + Delta-G solvation = -18456.468194 eV Core-core repulsion = 15691.573855 eV Total energy + Delta-G solvation = -2764.894340 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.60588 -36.72376 -35.14539 -32.58703 -31.80803 -30.75006 -28.95709 -26.49665 -25.12596 -23.87838 -23.04968 -21.24143 -20.20547 -19.58500 -16.73604 -16.14562 -15.60779 -15.04517 -14.81550 -14.71917 -14.53385 -14.08758 -13.52106 -13.03088 -12.88089 -12.63860 -12.37524 -12.06842 -11.82286 -11.61257 -11.47386 -11.30186 -11.06081 -10.93618 -10.87702 -10.83096 -10.59703 -10.26297 -10.07208 -9.78377 -9.47155 -9.00919 -8.33774 -8.27753 -7.30659 -6.01210 -4.00945 3.32808 3.39159 3.42418 3.96714 4.42949 4.48292 4.83835 4.95941 5.07278 5.16930 5.31496 5.34743 5.43364 5.51780 5.57978 5.64406 5.72174 5.76347 5.90808 5.97526 6.05724 6.14016 6.21896 6.34862 6.52766 6.56555 6.62597 6.74578 7.01276 7.09389 7.12856 7.30969 7.56953 7.86245 7.91057 8.18956 8.46682 8.57868 9.04889 9.62700 11.08127 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.041843 B = 0.005071 C = 0.004788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.012491 B = 5520.066806 C = 5846.540164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.211 3.789 3 H 0.040 0.960 4 C -0.498 4.498 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.274 1.274 12 N -0.679 5.679 13 C 0.036 3.964 14 C 0.136 3.864 15 O -0.566 6.566 16 C -0.129 4.129 17 C 0.058 3.942 18 N -0.545 5.545 19 C 0.026 3.974 20 C 0.061 3.939 21 C -0.101 4.101 22 H 0.010 0.990 23 H 0.071 0.929 24 H 0.029 0.971 25 H 0.260 0.740 26 H 0.318 0.682 27 H 0.025 0.975 28 H 0.073 0.927 29 H 0.376 0.624 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.036 0.964 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.022 0.978 37 H 0.040 0.960 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.841 -3.514 15.330 16.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.103 3.897 3 H 0.058 0.942 4 C -0.536 4.536 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.722 3.278 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.199 1.199 12 N -0.310 5.310 13 C -0.094 4.094 14 C 0.095 3.905 15 O -0.373 6.373 16 C -0.167 4.167 17 C -0.070 4.070 18 N -0.270 5.270 19 C -0.122 4.122 20 C -0.067 4.067 21 C -0.140 4.140 22 H 0.029 0.971 23 H 0.090 0.910 24 H 0.048 0.952 25 H 0.070 0.930 26 H 0.135 0.865 27 H 0.043 0.957 28 H 0.091 0.909 29 H 0.224 0.776 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.040 0.960 37 H 0.058 0.942 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.696 -2.566 15.439 16.340 hybrid contribution -1.303 -1.266 -1.030 2.088 sum 3.393 -3.832 14.409 15.291 Atomic orbital electron populations 1.22371 1.01077 0.98499 1.00203 1.19185 0.89119 0.94997 0.86392 0.94158 1.21080 1.34663 1.08210 0.89680 0.92001 1.24944 0.95610 0.94726 0.99019 1.69964 1.45688 1.14054 1.23707 0.86589 0.78651 0.80022 0.82587 1.20765 1.21466 1.19930 1.60884 1.57576 1.08969 1.03522 1.22542 0.99170 0.96524 0.91207 1.21296 0.88814 0.86817 0.93586 1.86428 1.67573 1.37914 1.45385 1.22093 0.96195 1.01808 0.96618 1.22088 1.00211 0.93382 0.91294 1.61974 1.20643 1.37612 1.06741 1.22319 0.99171 0.97843 0.92888 1.21985 0.88635 0.98579 0.97477 1.21560 1.01123 0.97577 0.93707 0.97141 0.91046 0.95200 0.93038 0.86535 0.95686 0.90866 0.77620 0.90542 0.89567 0.91265 0.94587 0.91574 0.91701 0.95967 0.94180 0.91332 0.91131 0.89940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.81 9.04 37.16 0.34 -3.47 16 2 C 0.21 5.18 2.44 -68.86 -0.17 5.02 16 3 H 0.04 1.11 7.74 -51.93 -0.40 0.71 16 4 C -0.50 -13.54 8.76 -34.44 -0.30 -13.84 16 5 H 0.06 1.69 7.83 -52.48 -0.41 1.28 16 6 C 0.06 1.61 5.17 -17.82 -0.09 1.51 16 7 N -0.90 -25.72 12.16 55.43 0.67 -25.05 16 8 Si 0.89 21.33 29.55 -169.99 -5.02 16.31 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.68 -13.59 5.52 -107.95 -0.60 -14.19 16 13 C 0.04 0.63 4.67 -3.83 -0.02 0.62 16 14 C 0.14 2.00 0.79 -90.50 -0.07 1.93 16 15 O -0.57 -8.37 11.80 -35.23 -0.42 -8.79 16 16 C -0.13 -1.86 4.89 -26.65 -0.13 -1.99 16 17 C 0.06 0.75 5.33 -3.83 -0.02 0.73 16 18 N -0.54 -6.79 4.91 -242.96 -1.19 -7.99 16 19 C 0.03 0.26 9.59 60.06 0.58 0.84 16 20 C 0.06 0.76 5.33 -3.83 -0.02 0.74 16 21 C -0.10 -1.35 5.11 -26.65 -0.14 -1.49 16 22 H 0.01 0.21 7.55 -51.93 -0.39 -0.18 16 23 H 0.07 1.86 6.83 -51.93 -0.35 1.50 16 24 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.32 5.91 6.83 -39.29 -0.27 5.64 16 27 H 0.02 0.46 7.51 -51.92 -0.39 0.07 16 28 H 0.07 1.35 8.05 -51.93 -0.42 0.93 16 29 H 0.38 4.96 7.46 45.56 0.34 5.30 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.09 1.33 7.70 -51.93 -0.40 0.93 16 32 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 33 H 0.04 0.48 7.76 -51.93 -0.40 0.08 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 36 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 37 H 0.04 0.54 7.76 -51.93 -0.40 0.13 16 38 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 39 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 40 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 310.79 15.07 4.68 4.68 Total: -1.00 -28.70 310.79 -8.35 -37.05 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -6.43 Total: 7.39 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -0.05 Total: -9.42 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: -1.11 Total: -47.22 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -0.42 Total: -8.79 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.70 -8.35 -37.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379947941.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.412 kcal (2) G-P(sol) polarization free energy of solvation -28.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds