Wall clock time and date at job start Mon Mar 30 2020 05:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46841 * 2 1 4 4 C 1.50697 * 109.47359 * 239.99328 * 2 1 3 5 5 H 1.08004 * 120.00061 * 245.45966 * 4 2 1 6 6 C 1.37878 * 119.99998 * 65.45881 * 4 2 1 7 7 N 1.31514 * 119.99946 * 9.55671 * 6 4 2 8 8 Si 1.86803 * 119.99957 * 189.54890 * 6 4 2 9 9 H 1.48503 * 109.46832 * 84.99737 * 8 6 4 10 10 H 1.48500 * 109.47119 * 204.99524 * 8 6 4 11 11 H 1.48495 * 109.46967 * 325.00141 * 8 6 4 12 12 N 1.46908 * 109.46716 * 119.99201 * 2 1 3 13 13 C 1.46901 * 110.99930 * 274.99957 * 12 2 1 14 14 C 1.52993 * 109.46892 * 180.02562 * 13 12 2 15 15 O 1.42909 * 109.52390 * 300.12675 * 14 13 12 16 16 C 1.53116 * 109.57508 * 60.29940 * 14 13 12 17 17 C 1.53038 * 109.28009 * 177.60116 * 16 14 13 18 18 N 1.46848 * 109.51720 * 300.80551 * 17 16 14 19 19 C 1.46896 * 111.00492 * 185.84364 * 18 17 16 20 20 C 1.46847 * 111.19640 * 61.74128 * 18 17 16 21 21 C 1.53035 * 109.52636 * 298.26446 * 20 18 17 22 22 H 1.08995 * 109.47667 * 303.69737 * 1 2 3 23 23 H 1.09004 * 109.47332 * 63.70182 * 1 2 3 24 24 H 1.09002 * 109.47223 * 183.69449 * 1 2 3 25 25 H 0.96994 * 120.00244 * 180.02562 * 7 6 4 26 26 H 1.00895 * 111.00000 * 38.95738 * 12 2 1 27 27 H 1.09007 * 109.46935 * 60.00453 * 13 12 2 28 28 H 1.08997 * 109.47333 * 300.00646 * 13 12 2 29 29 H 0.96700 * 113.99281 * 59.87888 * 15 14 13 30 30 H 1.08999 * 109.51404 * 57.65462 * 16 14 13 31 31 H 1.08996 * 109.49537 * 297.53272 * 16 14 13 32 32 H 1.08997 * 109.46547 * 180.79637 * 17 16 14 33 33 H 1.09004 * 109.46246 * 60.81616 * 17 16 14 34 34 H 1.09006 * 109.46744 * 59.99882 * 19 18 17 35 35 H 1.08998 * 109.47157 * 179.97438 * 19 18 17 36 36 H 1.08995 * 109.46815 * 300.00044 * 19 18 17 37 37 H 1.09006 * 109.45966 * 58.28432 * 20 18 17 38 38 H 1.09003 * 109.46387 * 178.25277 * 20 18 17 39 39 H 1.09008 * 109.50172 * 179.12128 * 21 20 18 40 40 H 1.09000 * 109.49992 * 299.23515 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.5787 -1.6372 -1.1336 6 6 1.7946 -0.1777 -2.4796 7 7 1.2992 1.0353 -2.5936 8 14 2.1764 -1.1784 -4.0100 9 1 1.0245 -2.0616 -4.3239 10 1 2.4230 -0.2619 -5.1520 11 1 3.3848 -2.0075 -3.7705 12 7 2.0196 -0.6924 1.1996 13 6 2.0824 0.2229 2.3469 14 6 2.5960 -0.5324 3.5743 15 8 1.7119 -1.6146 3.8737 16 6 3.9975 -1.0798 3.2904 17 6 4.5288 -1.7821 4.5420 18 7 4.5733 -0.8287 5.6579 19 6 5.2074 -1.4296 6.8389 20 6 3.2320 -0.3251 5.9798 21 6 2.6619 0.4204 4.7710 22 1 -0.3634 0.5701 0.8549 23 1 -0.3634 0.4553 -0.9213 24 1 -0.3634 -1.0255 0.0662 25 1 1.1316 1.4100 -3.4724 26 1 1.4495 -1.4978 1.4103 27 1 1.0869 0.6166 2.5525 28 1 2.7587 1.0465 2.1182 29 1 1.6222 -2.2586 3.1579 30 1 4.6623 -0.2581 3.0243 31 1 3.9499 -1.7916 2.4663 32 1 5.5323 -2.1607 4.3477 33 1 3.8710 -2.6122 4.7995 34 1 6.2268 -1.7267 6.5922 35 1 5.2277 -0.7019 7.6502 36 1 4.6388 -2.3058 7.1503 37 1 2.5804 -1.1621 6.2308 38 1 3.2935 0.3547 6.8297 39 1 1.6600 0.7807 5.0050 40 1 3.3056 1.2658 4.5281 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379947941.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:25 Heat of formation + Delta-G solvation = -76.252817 kcal Electronic energy + Delta-G solvation = -18457.413162 eV Core-core repulsion = 15691.573855 eV Total energy + Delta-G solvation = -2765.839307 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.76370 -38.05107 -36.70407 -34.36122 -33.15098 -31.82766 -30.60681 -27.75317 -27.17589 -25.10412 -24.13786 -22.53883 -22.02727 -20.71065 -18.57607 -17.37839 -17.06763 -16.54746 -16.21783 -15.97873 -15.72759 -15.32997 -14.99713 -14.58184 -14.31553 -13.97571 -13.65769 -13.42136 -13.26999 -13.04150 -12.84117 -12.78056 -12.59631 -12.35536 -12.29898 -12.22200 -12.06434 -12.00826 -11.87730 -11.25093 -10.99360 -10.64283 -10.44274 -9.23540 -9.00633 -8.11642 -6.18776 1.44326 1.44858 1.54783 2.44915 3.02642 3.18876 3.32368 3.48679 3.85797 3.91112 4.05675 4.26982 4.42395 4.46309 4.51469 4.63200 4.66020 4.68910 4.76351 4.78556 4.86142 4.91706 4.95744 5.02703 5.03394 5.05185 5.13287 5.36306 5.38133 5.39866 5.62481 5.75224 6.15119 6.18734 6.20937 6.60898 6.73365 6.84513 6.94262 7.49503 8.96717 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.041843 B = 0.005071 C = 0.004788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.012491 B = 5520.066806 C = 5846.540164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.215 3.785 3 H 0.003 0.997 4 C -0.513 4.513 5 H 0.058 0.942 6 C 0.010 3.990 7 N -0.925 5.925 8 Si 0.957 3.043 9 H -0.274 1.274 10 H -0.288 1.288 11 H -0.269 1.269 12 N -0.675 5.675 13 C 0.041 3.959 14 C 0.145 3.855 15 O -0.568 6.568 16 C -0.124 4.124 17 C 0.064 3.936 18 N -0.556 5.556 19 C 0.026 3.974 20 C 0.066 3.934 21 C -0.102 4.102 22 H 0.025 0.975 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.260 0.740 26 H 0.329 0.671 27 H 0.019 0.981 28 H 0.060 0.940 29 H 0.382 0.618 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.033 0.967 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.024 0.976 37 H 0.031 0.969 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.290 -4.574 16.380 17.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.106 3.894 3 H 0.021 0.979 4 C -0.552 4.552 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.565 5.565 8 Si 0.783 3.217 9 H -0.200 1.200 10 H -0.214 1.214 11 H -0.193 1.193 12 N -0.306 5.306 13 C -0.089 4.089 14 C 0.104 3.896 15 O -0.376 6.376 16 C -0.163 4.163 17 C -0.064 4.064 18 N -0.281 5.281 19 C -0.122 4.122 20 C -0.062 4.062 21 C -0.140 4.140 22 H 0.044 0.956 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.147 0.853 27 H 0.037 0.963 28 H 0.078 0.922 29 H 0.231 0.769 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.042 0.958 37 H 0.049 0.951 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.147 -3.646 16.511 17.675 hybrid contribution -1.432 -0.914 -1.310 2.145 sum 3.715 -4.561 15.202 16.300 Atomic orbital electron populations 1.22188 1.00190 0.99173 0.99337 1.18936 0.89676 0.93074 0.87669 0.97882 1.21395 1.34654 1.08159 0.90950 0.92356 1.25715 0.95555 0.95570 1.01984 1.70085 1.46688 1.15447 1.24308 0.85582 0.78699 0.78556 0.78851 1.19997 1.21364 1.19342 1.60704 1.57376 1.09361 1.03144 1.22548 0.98663 0.96193 0.91517 1.21192 0.88781 0.86844 0.92791 1.86430 1.67514 1.37907 1.45710 1.22004 0.95783 1.01187 0.97289 1.21997 1.00545 0.93085 0.90734 1.61984 1.20683 1.37840 1.07588 1.22386 0.99352 0.98219 0.92250 1.21954 0.88423 0.98463 0.97361 1.21582 1.01567 0.97356 0.93542 0.95628 0.93884 0.93935 0.93069 0.85305 0.96293 0.92194 0.76895 0.91690 0.90733 0.90276 0.94886 0.90719 0.90359 0.95760 0.95062 0.89437 0.90812 0.89831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.02 9.04 71.98 0.65 -6.36 16 2 C 0.22 10.72 2.44 44.17 0.11 10.83 16 3 H 0.00 0.18 7.74 -2.39 -0.02 0.16 16 4 C -0.51 -28.05 8.76 25.60 0.22 -27.82 16 5 H 0.06 3.17 7.83 -2.91 -0.02 3.14 16 6 C 0.01 0.56 5.17 84.65 0.44 1.00 16 7 N -0.93 -53.94 12.16 21.45 0.26 -53.68 16 8 Si 0.96 43.69 29.55 68.60 2.03 45.72 16 9 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 10 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 12 N -0.67 -26.95 5.52 -495.44 -2.73 -29.69 16 13 C 0.04 1.44 4.67 86.30 0.40 1.84 16 14 C 0.14 4.14 0.79 -10.72 -0.01 4.13 16 15 O -0.57 -15.97 11.80 -148.98 -1.76 -17.72 16 16 C -0.12 -3.50 4.89 30.65 0.15 -3.35 16 17 C 0.06 1.55 5.33 86.33 0.46 2.01 16 18 N -0.56 -12.66 4.91 -922.59 -4.53 -17.19 16 19 C 0.03 0.45 9.59 127.69 1.22 1.67 16 20 C 0.07 1.49 5.33 86.33 0.46 1.95 16 21 C -0.10 -2.58 5.11 30.64 0.16 -2.43 16 22 H 0.02 1.08 7.55 -2.39 -0.02 1.06 16 23 H 0.04 2.25 6.83 -2.39 -0.02 2.23 16 24 H 0.04 1.84 8.07 -2.39 -0.02 1.82 16 25 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 26 H 0.33 11.94 6.83 -89.70 -0.61 11.33 16 27 H 0.02 0.69 7.51 -2.38 -0.02 0.67 16 28 H 0.06 2.26 8.05 -2.39 -0.02 2.24 16 29 H 0.38 9.54 7.46 -74.06 -0.55 8.99 16 30 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.07 2.25 7.70 -2.39 -0.02 2.23 16 32 H 0.08 1.74 8.12 -2.39 -0.02 1.72 16 33 H 0.03 0.82 7.76 -2.39 -0.02 0.80 16 34 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.08 1.16 8.09 -2.39 -0.02 1.14 16 36 H 0.02 0.41 8.14 -2.39 -0.02 0.40 16 37 H 0.03 0.77 7.76 -2.38 -0.02 0.75 16 38 H 0.09 1.65 8.09 -2.39 -0.02 1.63 16 39 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 40 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -60.44 310.79 -2.62 -63.06 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: -0.16 Total: 26.04 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: 4.27 Total: -16.54 kcal Atomic # 7 Polarization: -93.55 SS G_CDS: -7.00 Total: -100.56 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -1.76 Total: -17.72 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -60.44 -2.62 -63.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379947941.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.188 kcal (2) G-P(sol) polarization free energy of solvation -60.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds