Wall clock time and date at job start Mon Mar 30 2020 05:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47277 * 2 1 4 4 C 1.50705 * 109.47496 * 239.99379 * 2 1 3 5 5 H 1.07991 * 120.00082 * 240.00356 * 4 2 1 6 6 C 1.37878 * 119.99535 * 60.00074 * 4 2 1 7 7 N 1.31517 * 120.00159 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99685 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.46920 * 89.99968 * 8 6 4 10 10 H 1.48500 * 109.47371 * 209.99731 * 8 6 4 11 11 H 1.48496 * 109.47520 * 330.00313 * 8 6 4 12 12 N 1.46906 * 109.46966 * 119.99726 * 2 1 3 13 13 C 1.46908 * 110.99814 * 275.00249 * 12 2 1 14 14 C 1.53117 * 109.51910 * 274.87487 * 13 12 2 15 15 C 1.53043 * 109.27241 * 182.50421 * 14 13 12 16 16 N 1.46854 * 109.57652 * 59.08383 * 15 14 13 17 17 C 1.46898 * 110.99891 * 174.19225 * 16 15 14 18 18 C 1.52996 * 109.46910 * 199.92575 * 17 16 15 19 19 O 1.42907 * 109.47021 * 64.59052 * 18 17 16 20 20 C 1.46843 * 111.19329 * 298.28946 * 16 15 14 21 21 C 1.53038 * 109.52521 * 61.74178 * 20 16 15 22 22 H 1.09001 * 109.47277 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47412 * 300.00487 * 1 2 3 24 24 H 1.09000 * 109.46774 * 60.00623 * 1 2 3 25 25 H 0.96995 * 119.99925 * 179.97438 * 7 6 4 26 26 H 1.00901 * 111.00005 * 151.04700 * 12 2 1 27 27 H 1.08998 * 109.52312 * 34.99652 * 13 12 2 28 28 H 1.09008 * 109.50299 * 302.38018 * 14 13 12 29 29 H 1.08997 * 109.51038 * 62.50085 * 14 13 12 30 30 H 1.08990 * 109.41172 * 299.06499 * 15 14 13 31 31 H 1.09002 * 109.45432 * 179.12276 * 15 14 13 32 32 H 1.09002 * 109.47018 * 319.92616 * 17 16 15 33 33 H 1.09003 * 109.47401 * 79.92990 * 17 16 15 34 34 H 1.09000 * 109.47211 * 184.58894 * 18 17 16 35 35 H 1.08995 * 109.47492 * 304.59242 * 18 17 16 36 36 H 0.96701 * 113.99658 * 179.97438 * 19 18 17 37 37 H 1.08995 * 109.46410 * 301.72696 * 20 16 15 38 38 H 1.09000 * 109.45395 * 181.75153 * 20 16 15 39 39 H 1.09006 * 109.50393 * 180.87565 * 21 20 16 40 40 H 1.09002 * 109.50349 * 60.76139 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3227 -1.1198 -4.0078 9 1 1.3450 -2.1619 -4.4121 10 1 2.4874 -0.1406 -5.1120 11 1 3.6310 -1.7568 -3.7117 12 7 2.0196 -0.6925 1.1995 13 6 2.0823 0.2227 2.3470 14 6 3.4129 0.9800 2.3253 15 6 3.4991 1.8853 3.5563 16 7 3.3971 1.0709 4.7740 17 6 3.6138 1.8895 5.9744 18 6 3.9933 0.9837 7.1476 19 8 5.2477 0.3548 6.8774 20 6 2.1071 0.3724 4.8391 21 6 1.9800 -0.5792 3.6473 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 0.7096 1.1616 -3.4844 26 1 2.9173 -1.1205 1.0289 27 1 1.2578 0.9335 2.2915 28 1 4.2376 0.2673 2.3403 29 1 3.4719 1.5865 1.4216 30 1 2.6830 2.6072 3.5328 31 1 4.4522 2.4142 3.5519 32 1 4.4189 2.6004 5.7889 33 1 2.6989 2.4312 6.2148 34 1 4.0743 1.5807 8.0560 35 1 3.2259 0.2213 7.2811 36 1 5.5514 -0.2353 7.5808 37 1 1.2975 1.1015 4.8096 38 1 2.0492 -0.1974 5.7665 39 1 1.0158 -1.0860 3.6874 40 1 2.7814 -1.3172 3.6837 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380116679.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:17 Heat of formation + Delta-G solvation = -53.182793 kcal Electronic energy + Delta-G solvation = -18177.978189 eV Core-core repulsion = 15413.139273 eV Total energy + Delta-G solvation = -2764.838916 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.10163 -36.96433 -35.56625 -33.20753 -31.21545 -30.58622 -28.79749 -26.80773 -25.14260 -23.37848 -22.49987 -21.25416 -19.66839 -19.45049 -17.54463 -16.57265 -16.03017 -15.05647 -14.89093 -14.41227 -14.16113 -13.92039 -13.68159 -13.39650 -13.13534 -12.58881 -12.30748 -12.14867 -11.88950 -11.34858 -11.25801 -11.05713 -10.89068 -10.88147 -10.50729 -10.45285 -10.20202 -10.13636 -10.06807 -9.95973 -9.58316 -8.78619 -8.43839 -8.16392 -7.15042 -5.99292 -4.05218 3.32275 3.38458 3.41982 3.93060 4.19408 4.43257 4.95532 4.99537 5.11300 5.17132 5.29148 5.32077 5.38759 5.44421 5.52493 5.61417 5.72170 5.77002 5.90466 6.05013 6.10988 6.17990 6.38853 6.46283 6.67981 6.80062 6.93125 7.18724 7.19525 7.26531 7.29825 7.57794 7.59483 7.82738 7.95215 8.31783 8.47448 8.74915 9.06877 9.60702 11.07078 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.046425 B = 0.004603 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.984801 B = 6082.161070 C = 6215.593573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.211 3.789 3 H 0.001 0.999 4 C -0.516 4.516 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.684 5.684 13 C 0.089 3.911 14 C -0.143 4.143 15 C 0.063 3.937 16 N -0.528 5.528 17 C 0.052 3.948 18 C 0.083 3.917 19 O -0.558 6.558 20 C 0.056 3.944 21 C -0.101 4.101 22 H 0.030 0.970 23 H 0.002 0.998 24 H 0.079 0.921 25 H 0.260 0.740 26 H 0.331 0.669 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.028 0.972 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.047 0.953 34 H 0.043 0.957 35 H 0.044 0.956 36 H 0.371 0.629 37 H 0.028 0.972 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.995 1.826 17.542 18.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.104 3.896 3 H 0.019 0.981 4 C -0.555 4.555 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.313 5.313 13 C -0.022 4.022 14 C -0.182 4.182 15 C -0.065 4.065 16 N -0.253 5.253 17 C -0.076 4.076 18 C 0.005 3.995 19 O -0.361 6.361 20 C -0.072 4.072 21 C -0.140 4.140 22 H 0.049 0.951 23 H 0.021 0.979 24 H 0.098 0.902 25 H 0.070 0.930 26 H 0.149 0.851 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.217 0.783 37 H 0.047 0.953 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.587 1.690 16.956 17.413 hybrid contribution 0.386 0.502 -0.529 0.825 sum 3.973 2.192 16.427 17.042 Atomic orbital electron populations 1.21721 0.98110 0.99239 0.99154 1.19091 0.92381 0.92417 0.85721 0.98136 1.21286 1.31254 1.12415 0.90521 0.92266 1.24916 0.95099 0.94990 0.99015 1.69901 1.36848 1.22919 1.23356 0.86537 0.79238 0.79322 0.82524 1.20667 1.21333 1.19927 1.60795 1.32118 1.32497 1.05927 1.21533 0.95215 0.93530 0.91911 1.22334 0.99954 0.99497 0.96443 1.22048 1.00147 0.94489 0.89842 1.61871 1.32609 1.29539 1.01273 1.22119 1.00091 0.94756 0.90630 1.22167 0.86046 0.95305 0.95982 1.86630 1.37500 1.64396 1.47614 1.22169 0.88890 0.96811 0.99343 1.21550 1.02070 0.97623 0.92735 0.95050 0.97893 0.90217 0.93011 0.85108 0.91725 0.91322 0.91296 0.95334 0.91308 0.90401 0.93541 0.93918 0.93735 0.78337 0.95341 0.91354 0.91358 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.15 9.18 37.16 0.34 -2.81 16 2 C 0.21 5.42 2.42 -68.86 -0.17 5.26 16 3 H 0.00 0.03 7.15 -51.93 -0.37 -0.34 16 4 C -0.52 -14.35 8.59 -34.44 -0.30 -14.64 16 5 H 0.06 1.63 7.62 -52.49 -0.40 1.23 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.75 11.32 55.43 0.63 -25.12 16 8 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 12 N -0.68 -14.89 6.05 -100.82 -0.61 -15.50 16 13 C 0.09 1.65 2.34 -67.59 -0.16 1.49 16 14 C -0.14 -2.46 5.34 -26.65 -0.14 -2.60 16 15 C 0.06 0.93 5.42 -3.83 -0.02 0.91 16 16 N -0.53 -7.32 4.53 -234.67 -1.06 -8.38 16 17 C 0.05 0.59 5.39 -3.83 -0.02 0.57 16 18 C 0.08 0.80 7.24 37.16 0.27 1.07 16 19 O -0.56 -6.20 13.60 -35.23 -0.48 -6.67 16 20 C 0.06 0.76 5.29 -3.84 -0.02 0.74 16 21 C -0.10 -1.60 5.70 -26.65 -0.15 -1.75 16 22 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.00 0.05 7.43 -51.93 -0.39 -0.34 16 24 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 25 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.33 7.18 7.94 -39.29 -0.31 6.87 16 27 H 0.06 1.29 7.12 -51.93 -0.37 0.92 16 28 H 0.07 1.21 8.10 -51.92 -0.42 0.79 16 29 H 0.07 1.30 7.47 -51.93 -0.39 0.91 16 30 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.96 7.93 -51.93 -0.41 0.54 16 32 H 0.08 0.88 7.79 -51.93 -0.40 0.47 16 33 H 0.05 0.46 8.00 -51.93 -0.42 0.05 16 34 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.04 0.41 6.71 -51.93 -0.35 0.06 16 36 H 0.37 2.35 9.12 45.56 0.42 2.77 16 37 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.81 6.65 -51.93 -0.35 0.47 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 310.83 15.07 4.68 4.68 Total: -1.00 -30.41 310.83 -8.47 -38.87 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -6.14 Total: 5.76 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -0.46 Total: -10.16 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -1.05 Total: -49.00 kcal Atomic # 8 Polarization: -6.20 SS G_CDS: -0.48 Total: -6.67 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.41 -8.47 -38.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380116679.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.308 kcal (2) G-P(sol) polarization free energy of solvation -30.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds