Wall clock time and date at job start Mon Mar 30 2020 05:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47277 * 2 1 4 4 C 1.50705 * 109.47496 * 239.99379 * 2 1 3 5 5 H 1.07991 * 120.00082 * 240.00356 * 4 2 1 6 6 C 1.37878 * 119.99535 * 60.00074 * 4 2 1 7 7 N 1.31517 * 120.00159 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99685 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.46920 * 89.99968 * 8 6 4 10 10 H 1.48500 * 109.47371 * 209.99731 * 8 6 4 11 11 H 1.48496 * 109.47520 * 330.00313 * 8 6 4 12 12 N 1.46906 * 109.46966 * 119.99726 * 2 1 3 13 13 C 1.46908 * 110.99814 * 275.00249 * 12 2 1 14 14 C 1.53117 * 109.51910 * 274.87487 * 13 12 2 15 15 C 1.53043 * 109.27241 * 182.50421 * 14 13 12 16 16 N 1.46854 * 109.57652 * 59.08383 * 15 14 13 17 17 C 1.46898 * 110.99891 * 174.19225 * 16 15 14 18 18 C 1.52996 * 109.46910 * 199.92575 * 17 16 15 19 19 O 1.42907 * 109.47021 * 64.59052 * 18 17 16 20 20 C 1.46843 * 111.19329 * 298.28946 * 16 15 14 21 21 C 1.53038 * 109.52521 * 61.74178 * 20 16 15 22 22 H 1.09001 * 109.47277 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47412 * 300.00487 * 1 2 3 24 24 H 1.09000 * 109.46774 * 60.00623 * 1 2 3 25 25 H 0.96995 * 119.99925 * 179.97438 * 7 6 4 26 26 H 1.00901 * 111.00005 * 151.04700 * 12 2 1 27 27 H 1.08998 * 109.52312 * 34.99652 * 13 12 2 28 28 H 1.09008 * 109.50299 * 302.38018 * 14 13 12 29 29 H 1.08997 * 109.51038 * 62.50085 * 14 13 12 30 30 H 1.08990 * 109.41172 * 299.06499 * 15 14 13 31 31 H 1.09002 * 109.45432 * 179.12276 * 15 14 13 32 32 H 1.09002 * 109.47018 * 319.92616 * 17 16 15 33 33 H 1.09003 * 109.47401 * 79.92990 * 17 16 15 34 34 H 1.09000 * 109.47211 * 184.58894 * 18 17 16 35 35 H 1.08995 * 109.47492 * 304.59242 * 18 17 16 36 36 H 0.96701 * 113.99658 * 179.97438 * 19 18 17 37 37 H 1.08995 * 109.46410 * 301.72696 * 20 16 15 38 38 H 1.09000 * 109.45395 * 181.75153 * 20 16 15 39 39 H 1.09006 * 109.50393 * 180.87565 * 21 20 16 40 40 H 1.09002 * 109.50349 * 60.76139 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3227 -1.1198 -4.0078 9 1 1.3450 -2.1619 -4.4121 10 1 2.4874 -0.1406 -5.1120 11 1 3.6310 -1.7568 -3.7117 12 7 2.0196 -0.6925 1.1995 13 6 2.0823 0.2227 2.3470 14 6 3.4129 0.9800 2.3253 15 6 3.4991 1.8853 3.5563 16 7 3.3971 1.0709 4.7740 17 6 3.6138 1.8895 5.9744 18 6 3.9933 0.9837 7.1476 19 8 5.2477 0.3548 6.8774 20 6 2.1071 0.3724 4.8391 21 6 1.9800 -0.5792 3.6473 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 0.7096 1.1616 -3.4844 26 1 2.9173 -1.1205 1.0289 27 1 1.2578 0.9335 2.2915 28 1 4.2376 0.2673 2.3403 29 1 3.4719 1.5865 1.4216 30 1 2.6830 2.6072 3.5328 31 1 4.4522 2.4142 3.5519 32 1 4.4189 2.6004 5.7889 33 1 2.6989 2.4312 6.2148 34 1 4.0743 1.5807 8.0560 35 1 3.2259 0.2213 7.2811 36 1 5.5514 -0.2353 7.5808 37 1 1.2975 1.1015 4.8096 38 1 2.0492 -0.1974 5.7665 39 1 1.0158 -1.0860 3.6874 40 1 2.7814 -1.3172 3.6837 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380116679.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:16 Heat of formation + Delta-G solvation = -77.289104 kcal Electronic energy + Delta-G solvation = -18179.023517 eV Core-core repulsion = 15413.139273 eV Total energy + Delta-G solvation = -2765.884244 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.32349 -38.07322 -36.96002 -34.95205 -32.87592 -31.82071 -30.21354 -28.28674 -27.25179 -24.60945 -23.77701 -22.36711 -21.51561 -20.84674 -18.54184 -18.25289 -17.21539 -16.86853 -16.12725 -15.74379 -15.63096 -15.26668 -14.99389 -14.71956 -14.50716 -13.96021 -13.84740 -13.48960 -13.16944 -13.06868 -12.87901 -12.69102 -12.51448 -12.27029 -12.18970 -12.15602 -11.93175 -11.80486 -11.47501 -11.14568 -10.86976 -10.75190 -10.56345 -9.21769 -8.95890 -8.13109 -6.27007 1.42069 1.42783 1.53218 2.41728 2.91151 3.15392 3.51993 3.58492 3.87085 3.97621 4.16428 4.24659 4.33557 4.36192 4.49274 4.57197 4.64133 4.67975 4.76570 4.78797 4.82350 4.88339 4.95219 5.04885 5.08333 5.12837 5.23671 5.32821 5.37029 5.53035 5.70158 5.87297 6.13602 6.20685 6.22953 6.51174 6.80620 7.02446 7.06963 7.43513 8.92652 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.046425 B = 0.004603 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.984801 B = 6082.161070 C = 6215.593573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.217 3.783 3 H -0.030 1.030 4 C -0.537 4.537 5 H 0.058 0.942 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.962 3.038 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.268 1.268 12 N -0.682 5.682 13 C 0.089 3.911 14 C -0.135 4.135 15 C 0.070 3.930 16 N -0.539 5.539 17 C 0.047 3.953 18 C 0.084 3.916 19 O -0.585 6.585 20 C 0.062 3.938 21 C -0.092 4.092 22 H 0.027 0.973 23 H 0.018 0.982 24 H 0.056 0.944 25 H 0.262 0.738 26 H 0.331 0.669 27 H 0.048 0.952 28 H 0.063 0.937 29 H 0.043 0.957 30 H 0.029 0.971 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.050 0.950 36 H 0.390 0.610 37 H 0.032 0.968 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.433 1.354 18.999 19.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.109 3.891 3 H -0.013 1.013 4 C -0.575 4.575 5 H 0.076 0.924 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.788 3.212 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.192 1.192 12 N -0.311 5.311 13 C -0.021 4.021 14 C -0.174 4.174 15 C -0.059 4.059 16 N -0.265 5.265 17 C -0.080 4.080 18 C 0.006 3.994 19 O -0.393 6.393 20 C -0.066 4.066 21 C -0.131 4.131 22 H 0.046 0.954 23 H 0.037 0.963 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.148 0.852 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.238 0.762 37 H 0.050 0.950 38 H 0.110 0.890 39 H 0.087 0.913 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.032 1.210 18.454 18.928 hybrid contribution 0.261 0.669 -0.926 1.171 sum 4.293 1.878 17.528 18.144 Atomic orbital electron populations 1.21544 0.97980 0.98736 0.98783 1.18876 0.92429 0.90855 0.86945 1.01267 1.21600 1.31591 1.12622 0.91718 0.92426 1.25728 0.95179 0.95656 1.02017 1.70027 1.37603 1.24060 1.24112 0.85494 0.78864 0.78209 0.78671 1.20096 1.20867 1.19244 1.60753 1.32108 1.32890 1.05357 1.21597 0.95238 0.93299 0.91980 1.22179 0.98951 0.99360 0.96954 1.21919 1.00674 0.93923 0.89336 1.61865 1.32742 1.30104 1.01754 1.22265 1.00783 0.95006 0.89982 1.22219 0.85679 0.95491 0.95999 1.86570 1.38215 1.65185 1.49301 1.22128 0.88960 0.96562 0.98993 1.21450 1.01945 0.97651 0.92030 0.95396 0.96275 0.92520 0.92876 0.85161 0.93351 0.91781 0.93812 0.95277 0.90464 0.90681 0.92003 0.91307 0.93161 0.76167 0.95029 0.89014 0.91267 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.79 9.18 71.98 0.66 -5.13 16 2 C 0.22 11.43 2.42 44.17 0.11 11.54 16 3 H -0.03 -1.75 7.15 -2.39 -0.02 -1.77 16 4 C -0.54 -30.26 8.59 25.60 0.22 -30.04 16 5 H 0.06 3.19 7.62 -2.92 -0.02 3.17 16 6 C 0.01 0.75 5.30 84.65 0.45 1.19 16 7 N -0.92 -53.86 11.32 21.45 0.24 -53.62 16 8 Si 0.96 44.25 29.54 68.60 2.03 46.28 16 9 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 12 N -0.68 -30.07 6.05 -472.89 -2.86 -32.93 16 13 C 0.09 3.31 2.34 44.99 0.11 3.42 16 14 C -0.13 -4.70 5.34 30.65 0.16 -4.54 16 15 C 0.07 2.01 5.42 86.33 0.47 2.47 16 16 N -0.54 -13.89 4.53 -896.36 -4.06 -17.95 16 17 C 0.05 0.93 5.39 86.30 0.47 1.40 16 18 C 0.08 1.35 7.24 71.98 0.52 1.87 16 19 O -0.59 -11.58 13.60 -148.98 -2.03 -13.60 16 20 C 0.06 1.52 5.29 86.33 0.46 1.98 16 21 C -0.09 -2.80 5.70 30.64 0.17 -2.62 16 22 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.02 0.87 7.43 -2.39 -0.02 0.85 16 24 H 0.06 3.19 6.07 -2.39 -0.01 3.17 16 25 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 26 H 0.33 14.54 7.94 -89.69 -0.71 13.83 16 27 H 0.05 1.95 7.12 -2.39 -0.02 1.93 16 28 H 0.06 2.27 8.10 -2.38 -0.02 2.25 16 29 H 0.04 1.72 7.47 -2.39 -0.02 1.70 16 30 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.08 2.07 7.93 -2.39 -0.02 2.05 16 32 H 0.07 1.53 7.79 -2.39 -0.02 1.51 16 33 H 0.06 1.04 8.00 -2.39 -0.02 1.02 16 34 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.05 0.74 6.71 -2.39 -0.02 0.73 16 36 H 0.39 4.00 9.12 -74.06 -0.68 3.33 16 37 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.09 1.88 6.65 -2.39 -0.02 1.86 16 39 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 40 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -64.83 310.83 -3.26 -68.09 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: -0.37 Total: 22.19 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: 3.79 Total: -18.46 kcal Atomic # 7 Polarization: -97.81 SS G_CDS: -6.68 Total: -104.49 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: -2.03 Total: -13.60 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -64.83 -3.26 -68.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380116679.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.198 kcal (2) G-P(sol) polarization free energy of solvation -64.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds