Wall clock time and date at job start Mon Mar 30 2020 05:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.46862 * 2 1 4 4 C 1.50698 * 109.46688 * 240.00433 * 2 1 3 5 5 H 1.08003 * 120.00217 * 245.45692 * 4 2 1 6 6 C 1.37879 * 120.00184 * 65.46237 * 4 2 1 7 7 N 1.31509 * 119.99911 * 9.54753 * 6 4 2 8 8 Si 1.86801 * 119.99888 * 189.54814 * 6 4 2 9 9 H 1.48508 * 109.47108 * 84.99406 * 8 6 4 10 10 H 1.48500 * 109.47057 * 204.98949 * 8 6 4 11 11 H 1.48496 * 109.47186 * 324.99295 * 8 6 4 12 12 N 1.46897 * 109.47095 * 120.00523 * 2 1 3 13 13 C 1.46904 * 111.00051 * 274.99712 * 12 2 1 14 14 H 1.08999 * 109.49944 * 35.07779 * 13 12 2 15 15 C 1.53113 * 109.50316 * 275.00488 * 13 12 2 16 16 C 1.53114 * 109.16192 * 182.40511 * 15 13 12 17 17 C 1.53038 * 109.27919 * 57.64995 * 16 15 13 18 18 N 1.46839 * 109.52382 * 300.82110 * 17 16 15 19 19 C 1.46901 * 111.00007 * 185.83768 * 18 17 16 20 20 C 1.53003 * 109.47309 * 293.95529 * 19 18 17 21 21 O 1.42899 * 109.46691 * 64.99769 * 20 19 18 22 22 C 1.46855 * 111.19825 * 61.74242 * 18 17 16 23 23 H 1.08996 * 109.47430 * 63.67309 * 1 2 3 24 24 H 1.09007 * 109.46995 * 183.67425 * 1 2 3 25 25 H 1.09001 * 109.47026 * 303.67223 * 1 2 3 26 26 H 0.97003 * 119.99681 * 180.02562 * 7 6 4 27 27 H 1.00903 * 111.00093 * 38.95295 * 12 2 1 28 28 H 1.09009 * 109.52637 * 302.30608 * 15 13 12 29 29 H 1.09000 * 109.52625 * 62.43370 * 15 13 12 30 30 H 1.09005 * 109.50814 * 177.59341 * 16 15 13 31 31 H 1.09006 * 109.50312 * 297.66919 * 16 15 13 32 32 H 1.08996 * 109.46150 * 60.84162 * 17 16 15 33 33 H 1.09005 * 109.46290 * 180.81647 * 17 16 15 34 34 H 1.08997 * 109.46876 * 53.96057 * 19 18 17 35 35 H 1.09007 * 109.47079 * 173.96068 * 19 18 17 36 36 H 1.08993 * 109.47186 * 185.00003 * 20 19 18 37 37 H 1.08997 * 109.47218 * 305.00187 * 20 19 18 38 38 H 0.96703 * 113.99780 * 180.02562 * 21 20 19 39 39 H 1.08991 * 109.46366 * 178.23804 * 22 18 17 40 40 H 1.09003 * 109.45951 * 58.27260 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5785 -1.6370 -1.1340 6 6 1.7945 -0.1772 -2.4796 7 7 1.2991 1.0357 -2.5935 8 14 2.1761 -1.1777 -4.0103 9 1 1.0241 -2.0608 -4.3243 10 1 2.4226 -0.2610 -5.1522 11 1 3.3846 -2.0068 -3.7711 12 7 2.0197 -0.6926 1.1994 13 6 2.0826 0.2224 2.3469 14 1 1.2571 0.9322 2.2920 15 6 3.4119 0.9817 2.3230 16 6 3.4951 1.8883 3.5542 17 6 3.3537 1.0377 4.8185 18 7 2.0660 0.3323 4.7940 19 6 1.8348 -0.3853 6.0547 20 6 2.8629 -1.5093 6.1978 21 8 4.1707 -0.9461 6.3178 22 6 1.9821 -0.5799 3.6462 23 1 -0.3634 0.4557 -0.9210 24 1 -0.3633 -1.0256 0.0659 25 1 -0.3633 0.5698 0.8553 26 1 1.1315 1.4106 -3.4723 27 1 1.4496 -1.4980 1.4099 28 1 4.2380 0.2706 2.3379 29 1 3.4692 1.5876 1.4188 30 1 4.4577 2.3996 3.5653 31 1 2.6923 2.6248 3.5187 32 1 4.1651 0.3111 4.8600 33 1 3.3980 1.6821 5.6966 34 1 1.9347 0.3072 6.8905 35 1 0.8306 -0.8095 6.0524 36 1 2.6373 -2.0969 7.0876 37 1 2.8234 -2.1520 5.3184 38 1 4.8745 -1.6026 6.4118 39 1 1.0304 -1.1104 3.6728 40 1 2.8000 -1.2989 3.6932 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380216855.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:02 Heat of formation + Delta-G solvation = -49.864561 kcal Electronic energy + Delta-G solvation = -18507.403216 eV Core-core repulsion = 15742.708189 eV Total energy + Delta-G solvation = -2764.695026 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.35028 -36.93826 -35.37173 -33.15262 -32.10181 -29.86553 -28.48048 -26.60113 -25.03544 -24.21890 -22.07688 -21.47059 -19.82174 -19.12660 -17.63278 -16.52139 -15.73981 -15.31308 -14.82562 -14.49718 -14.29328 -13.98975 -13.58169 -13.19917 -12.83529 -12.43062 -12.29003 -12.02278 -11.97565 -11.66628 -11.45867 -11.11940 -10.91762 -10.80701 -10.60421 -10.31051 -10.27217 -10.06866 -10.00844 -9.88357 -9.53431 -8.95558 -8.27350 -8.01199 -7.18525 -5.95382 -3.94480 3.36054 3.42097 3.45709 3.92714 4.23945 4.49598 4.94397 5.01417 5.14780 5.23993 5.27868 5.37343 5.43474 5.51536 5.65378 5.74254 5.81278 5.90343 5.96997 6.19129 6.26843 6.33818 6.47237 6.49947 6.70627 6.79181 6.83375 6.94711 7.11211 7.26559 7.29752 7.41485 7.48781 7.66212 7.94713 8.29742 8.62446 8.69654 9.11939 9.68811 11.13962 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.040069 B = 0.005135 C = 0.005075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.619246 B = 5451.598474 C = 5515.949383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.211 3.789 3 H 0.042 0.958 4 C -0.496 4.496 5 H 0.061 0.939 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.892 3.108 9 H -0.282 1.282 10 H -0.289 1.289 11 H -0.275 1.275 12 N -0.680 5.680 13 C 0.093 3.907 14 H 0.042 0.958 15 C -0.104 4.104 16 C -0.120 4.120 17 C 0.055 3.945 18 N -0.534 5.534 19 C 0.056 3.944 20 C 0.034 3.966 21 O -0.563 6.563 22 C 0.056 3.944 23 H 0.070 0.930 24 H 0.028 0.972 25 H 0.011 0.989 26 H 0.259 0.741 27 H 0.322 0.678 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.044 0.956 37 H 0.051 0.949 38 H 0.371 0.629 39 H 0.064 0.936 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.503 -3.043 16.648 17.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.103 3.897 3 H 0.060 0.940 4 C -0.534 4.534 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.720 3.280 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.200 1.200 12 N -0.310 5.310 13 C -0.017 4.017 14 H 0.060 0.940 15 C -0.143 4.143 16 C -0.158 4.158 17 C -0.072 4.072 18 N -0.257 5.257 19 C -0.072 4.072 20 C -0.046 4.046 21 O -0.368 6.368 22 C -0.072 4.072 23 H 0.089 0.911 24 H 0.047 0.953 25 H 0.030 0.970 26 H 0.069 0.931 27 H 0.138 0.862 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.218 0.782 39 H 0.082 0.918 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.407 -1.903 16.222 16.510 hybrid contribution -0.017 -1.573 -0.560 1.670 sum 2.390 -3.476 15.662 16.220 Atomic orbital electron populations 1.22383 1.01250 0.98389 1.00180 1.19202 0.88949 0.95059 0.86443 0.94014 1.21107 1.34440 1.08135 0.89764 0.92104 1.24939 0.95715 0.94733 0.98942 1.69971 1.45845 1.14044 1.23590 0.86610 0.78615 0.80047 0.82694 1.20798 1.21496 1.19992 1.60862 1.57881 1.08867 1.03371 1.21376 0.96899 0.94398 0.89072 0.93990 1.21533 0.97607 0.98009 0.97114 1.21653 1.01124 0.98274 0.94767 1.22275 0.90279 0.97204 0.97425 1.62051 1.33731 1.28384 1.01568 1.22295 0.97057 0.94570 0.93323 1.23048 0.84199 0.97495 0.99818 1.86642 1.16452 1.37403 1.96325 1.22269 1.00232 0.94180 0.90562 0.91135 0.95307 0.97044 0.93111 0.86178 0.92185 0.91588 0.92020 0.91932 0.91719 0.91985 0.90302 0.89557 0.93769 0.93050 0.78177 0.91765 0.94139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.92 9.03 37.16 0.34 -3.58 16 2 C 0.21 5.37 2.25 -68.86 -0.16 5.21 16 3 H 0.04 1.19 7.08 -51.93 -0.37 0.82 16 4 C -0.50 -13.87 8.76 -34.44 -0.30 -14.17 16 5 H 0.06 1.72 7.83 -52.48 -0.41 1.31 16 6 C 0.06 1.62 5.17 -17.82 -0.09 1.53 16 7 N -0.90 -26.17 12.16 55.43 0.67 -25.49 16 8 Si 0.89 21.71 29.55 -169.99 -5.02 16.69 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 N -0.68 -14.58 6.04 -100.87 -0.61 -15.19 16 13 C 0.09 1.74 2.47 -67.64 -0.17 1.58 16 14 H 0.04 0.87 7.15 -51.93 -0.37 0.50 16 15 C -0.10 -1.89 5.48 -26.61 -0.15 -2.04 16 16 C -0.12 -1.82 6.09 -26.65 -0.16 -1.98 16 17 C 0.06 0.78 4.61 -3.84 -0.02 0.76 16 18 N -0.53 -7.56 4.86 -234.67 -1.14 -8.70 16 19 C 0.06 0.63 5.93 -3.82 -0.02 0.61 16 20 C 0.03 0.33 6.83 37.16 0.25 0.59 16 21 O -0.56 -5.84 10.33 -35.23 -0.36 -6.20 16 22 C 0.06 0.86 4.11 -3.83 -0.02 0.84 16 23 H 0.07 1.87 6.83 -51.93 -0.35 1.52 16 24 H 0.03 0.64 8.07 -51.92 -0.42 0.23 16 25 H 0.01 0.24 7.47 -51.93 -0.39 -0.15 16 26 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.32 6.48 8.06 -39.29 -0.32 6.16 16 28 H 0.06 1.11 8.14 -51.92 -0.42 0.68 16 29 H 0.07 1.35 7.46 -51.93 -0.39 0.96 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.94 5.54 -51.93 -0.29 0.65 16 33 H 0.06 0.83 8.06 -51.93 -0.42 0.42 16 34 H 0.08 0.85 8.06 -51.93 -0.42 0.44 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.05 0.54 6.23 -51.93 -0.32 0.22 16 38 H 0.37 2.40 9.12 45.56 0.42 2.81 16 39 H 0.06 0.95 8.11 -51.93 -0.42 0.52 16 40 H 0.04 0.63 6.50 -51.93 -0.34 0.29 16 LS Contribution 305.61 15.07 4.61 4.61 Total: -1.00 -30.12 305.61 -8.40 -38.52 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -6.06 Total: 6.43 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -0.49 Total: -10.66 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: -1.08 Total: -49.38 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -0.36 Total: -6.20 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.12 -8.40 -38.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380216855.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.342 kcal (2) G-P(sol) polarization free energy of solvation -30.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds