Wall clock time and date at job start Mon Mar 30 2020 05:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46978 * 2 1 4 4 C 1.50701 * 109.47113 * 239.99736 * 2 1 3 5 5 H 1.08001 * 119.99649 * 240.00296 * 4 2 1 6 6 C 1.37873 * 120.00199 * 60.00216 * 4 2 1 7 7 N 1.31518 * 119.99753 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00367 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46654 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47118 * 120.00023 * 8 6 4 11 11 H 1.48494 * 109.47324 * 240.00346 * 8 6 4 12 12 N 1.46901 * 109.46593 * 119.99711 * 2 1 3 13 13 C 1.46901 * 110.99713 * 203.75966 * 12 2 1 14 14 H 1.09000 * 109.50513 * 325.54951 * 13 12 2 15 15 C 1.53117 * 109.50134 * 85.66806 * 13 12 2 16 16 C 1.53126 * 109.15886 * 177.59427 * 15 13 12 17 17 C 1.53036 * 109.27831 * 302.34678 * 16 15 13 18 18 N 1.46840 * 109.52451 * 59.17864 * 17 16 15 19 19 C 1.46905 * 110.99944 * 174.16032 * 18 17 16 20 20 C 1.53005 * 109.46921 * 200.31533 * 19 18 17 21 21 O 1.42900 * 109.47031 * 65.22237 * 20 19 18 22 22 C 1.46851 * 111.20083 * 298.25631 * 18 17 16 23 23 H 1.09005 * 109.46850 * 63.52068 * 1 2 3 24 24 H 1.09004 * 109.47294 * 183.51360 * 1 2 3 25 25 H 1.08998 * 109.47158 * 303.52107 * 1 2 3 26 26 H 0.96997 * 120.00225 * 179.97438 * 7 6 4 27 27 H 1.00894 * 111.00316 * 327.71715 * 12 2 1 28 28 H 1.08991 * 109.52167 * 297.49683 * 15 13 12 29 29 H 1.09000 * 109.52448 * 57.69026 * 15 13 12 30 30 H 1.08998 * 109.50198 * 62.28368 * 16 15 13 31 31 H 1.08996 * 109.49937 * 182.36405 * 16 15 13 32 32 H 1.09003 * 109.46401 * 299.16248 * 17 16 15 33 33 H 1.08999 * 109.46145 * 179.19632 * 17 16 15 34 34 H 1.09000 * 109.47044 * 80.31746 * 19 18 17 35 35 H 1.08997 * 109.47160 * 320.31500 * 19 18 17 36 36 H 1.08993 * 109.47081 * 305.21690 * 20 19 18 37 37 H 1.09001 * 109.46898 * 185.21374 * 20 19 18 38 38 H 0.96694 * 114.00178 * 180.02562 * 21 20 19 39 39 H 1.09000 * 109.46435 * 181.76027 * 22 18 17 40 40 H 1.09002 * 109.46141 * 301.72852 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3226 -1.1197 -4.0079 9 1 3.1475 -2.2865 -3.6036 10 1 1.1679 -1.5867 -4.8165 11 1 3.1474 -0.1860 -4.8160 12 7 2.0196 -0.6925 1.1995 13 6 3.3785 -0.2529 1.5433 14 1 3.9343 -0.0406 0.6300 15 6 3.3044 1.0118 2.4033 16 6 4.7214 1.4287 2.8070 17 6 5.3933 0.2756 3.5560 18 7 5.4403 -0.9101 2.6911 19 6 6.2014 -1.9947 3.3255 20 6 6.6634 -2.9867 2.2562 21 8 7.5900 -2.3439 1.3786 22 6 4.0893 -1.3573 2.3290 23 1 -0.3633 0.4582 -0.9199 24 1 -0.3634 -1.0258 0.0630 25 1 -0.3633 0.5675 0.8567 26 1 0.7089 1.1612 -3.4844 27 1 1.3893 -0.5599 1.9761 28 1 2.8376 1.8140 1.8319 29 1 2.7153 0.8100 3.2979 30 1 5.2987 1.6679 1.9140 31 1 4.6725 2.3044 3.4542 32 1 4.8231 0.0460 4.4562 33 1 6.4074 0.5640 3.8324 34 1 5.5678 -2.5086 4.0484 35 1 7.0706 -1.5788 3.8351 36 1 5.8020 -3.3326 1.6851 37 1 7.1474 -3.8379 2.7352 38 1 7.9252 -2.9148 0.6738 39 1 4.1563 -2.2549 1.7142 40 1 3.5252 -1.5792 3.2349 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380216858.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:05 Heat of formation + Delta-G solvation = -51.219722 kcal Electronic energy + Delta-G solvation = -18485.417923 eV Core-core repulsion = 15720.664132 eV Total energy + Delta-G solvation = -2764.753790 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.02576 -36.74969 -35.45955 -33.16798 -31.98132 -29.91773 -28.57724 -26.60765 -25.08831 -23.96346 -21.81174 -21.19519 -20.11770 -19.29853 -17.31742 -16.12317 -16.03871 -15.03595 -14.71859 -14.39405 -14.08097 -13.87477 -13.69464 -13.39820 -12.75146 -12.66219 -12.60703 -12.20560 -11.95568 -11.31786 -11.10646 -10.91815 -10.86999 -10.70946 -10.58380 -10.28645 -10.16549 -10.03442 -9.92910 -9.83688 -9.58413 -9.02949 -8.33410 -8.01844 -7.15881 -5.91768 -3.94848 3.35479 3.42936 3.48523 4.01882 4.38644 4.50360 5.02658 5.13654 5.25101 5.31270 5.35296 5.37654 5.44705 5.52446 5.65779 5.68239 5.79489 5.88714 5.93674 6.05271 6.12945 6.20181 6.33698 6.47341 6.69787 6.80280 6.85918 7.03875 7.12908 7.33792 7.39894 7.54364 7.80603 7.81017 7.98969 8.36099 8.43654 8.82219 9.13152 9.70092 11.14569 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.020958 B = 0.007079 C = 0.005845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.706414 B = 3954.250566 C = 4789.098710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.213 3.787 3 H 0.002 0.998 4 C -0.487 4.487 5 H 0.061 0.939 6 C 0.053 3.947 7 N -0.899 5.899 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.286 1.286 12 N -0.682 5.682 13 C 0.100 3.900 14 H 0.091 0.909 15 C -0.149 4.149 16 C -0.112 4.112 17 C 0.061 3.939 18 N -0.529 5.529 19 C 0.057 3.943 20 C 0.082 3.918 21 O -0.559 6.559 22 C 0.071 3.929 23 H 0.090 0.910 24 H 0.033 0.967 25 H 0.004 0.996 26 H 0.258 0.742 27 H 0.314 0.686 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.025 0.975 33 H 0.068 0.932 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.050 0.950 37 H 0.041 0.959 38 H 0.372 0.628 39 H 0.078 0.922 40 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.591 -3.775 11.793 15.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.106 3.894 3 H 0.020 0.980 4 C -0.526 4.526 5 H 0.079 0.921 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.212 1.212 12 N -0.311 5.311 13 C -0.011 4.011 14 H 0.109 0.891 15 C -0.188 4.188 16 C -0.150 4.150 17 C -0.067 4.067 18 N -0.254 5.254 19 C -0.071 4.071 20 C 0.003 3.997 21 O -0.363 6.363 22 C -0.057 4.057 23 H 0.108 0.892 24 H 0.052 0.948 25 H 0.023 0.977 26 H 0.068 0.932 27 H 0.130 0.870 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.043 0.957 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.218 0.782 39 H 0.096 0.904 40 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 8.828 -3.592 11.252 14.746 hybrid contribution -0.301 -0.240 -0.095 0.396 sum 8.527 -3.832 11.157 14.556 Atomic orbital electron populations 1.21943 0.98420 0.99026 1.00785 1.19147 0.91347 0.92160 0.86756 0.98017 1.21223 1.29925 1.11883 0.89611 0.92068 1.24953 0.95499 0.95204 0.99015 1.69889 1.37595 1.23353 1.23098 0.86492 0.78497 0.79681 0.83045 1.19785 1.21238 1.21236 1.60649 1.01331 1.61896 1.07241 1.21403 0.91806 0.90274 0.97611 0.89077 1.22353 0.96400 1.00320 0.99735 1.21509 0.96525 0.96422 1.00579 1.22053 0.99829 0.91251 0.93578 1.61765 1.15933 1.05000 1.42690 1.22077 0.97624 0.92880 0.94537 1.22173 0.92102 0.93569 0.91842 1.86581 1.62757 1.42248 1.44694 1.22123 0.86530 0.99076 0.97996 0.89159 0.94815 0.97707 0.93224 0.87032 0.91774 0.93094 0.90951 0.92229 0.95658 0.91332 0.93664 0.90663 0.93207 0.94079 0.78200 0.90377 0.95903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 9.01 37.16 0.33 -3.18 16 2 C 0.21 5.41 2.43 -68.86 -0.17 5.25 16 3 H 0.00 0.06 7.19 -51.93 -0.37 -0.31 16 4 C -0.49 -13.70 8.43 -34.44 -0.29 -13.99 16 5 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 6 C 0.05 1.50 5.30 -17.82 -0.09 1.41 16 7 N -0.90 -26.11 11.30 55.43 0.63 -25.48 16 8 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 9 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 12 N -0.68 -14.63 6.04 -100.87 -0.61 -15.24 16 13 C 0.10 1.94 2.43 -67.63 -0.16 1.78 16 14 H 0.09 2.10 7.59 -51.93 -0.39 1.71 16 15 C -0.15 -2.50 5.24 -26.61 -0.14 -2.64 16 16 C -0.11 -1.64 6.09 -26.65 -0.16 -1.80 16 17 C 0.06 0.83 5.42 -3.84 -0.02 0.81 16 18 N -0.53 -8.10 4.53 -234.66 -1.06 -9.16 16 19 C 0.06 0.72 5.39 -3.82 -0.02 0.70 16 20 C 0.08 0.99 7.24 37.16 0.27 1.26 16 21 O -0.56 -7.60 13.61 -35.23 -0.48 -8.08 16 22 C 0.07 1.19 4.90 -3.83 -0.02 1.17 16 23 H 0.09 2.44 5.98 -51.93 -0.31 2.13 16 24 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 26 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.31 6.16 8.09 -39.30 -0.32 5.84 16 28 H 0.06 1.18 7.50 -51.93 -0.39 0.79 16 29 H 0.05 0.80 8.10 -51.93 -0.42 0.38 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.86 7.93 -51.93 -0.41 0.44 16 34 H 0.05 0.51 7.99 -51.93 -0.42 0.10 16 35 H 0.07 0.89 7.79 -51.93 -0.40 0.49 16 36 H 0.05 0.65 6.71 -51.93 -0.35 0.30 16 37 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.37 3.44 9.12 45.56 0.42 3.86 16 39 H 0.08 1.40 6.66 -51.93 -0.35 1.05 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 312.00 15.07 4.70 4.70 Total: -1.00 -30.56 312.00 -8.54 -39.10 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -6.22 Total: 6.50 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -0.48 Total: -9.24 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: -1.05 Total: -49.89 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -0.48 Total: -8.08 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.56 -8.54 -39.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380216858.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.122 kcal (2) G-P(sol) polarization free energy of solvation -30.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds