Wall clock time and date at job start Mon Mar 30 2020 05:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46978 * 2 1 4 4 C 1.50701 * 109.47113 * 239.99736 * 2 1 3 5 5 H 1.08001 * 119.99649 * 240.00296 * 4 2 1 6 6 C 1.37873 * 120.00199 * 60.00216 * 4 2 1 7 7 N 1.31518 * 119.99753 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00367 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46654 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47118 * 120.00023 * 8 6 4 11 11 H 1.48494 * 109.47324 * 240.00346 * 8 6 4 12 12 N 1.46901 * 109.46593 * 119.99711 * 2 1 3 13 13 C 1.46901 * 110.99713 * 203.75966 * 12 2 1 14 14 H 1.09000 * 109.50513 * 325.54951 * 13 12 2 15 15 C 1.53117 * 109.50134 * 85.66806 * 13 12 2 16 16 C 1.53126 * 109.15886 * 177.59427 * 15 13 12 17 17 C 1.53036 * 109.27831 * 302.34678 * 16 15 13 18 18 N 1.46840 * 109.52451 * 59.17864 * 17 16 15 19 19 C 1.46905 * 110.99944 * 174.16032 * 18 17 16 20 20 C 1.53005 * 109.46921 * 200.31533 * 19 18 17 21 21 O 1.42900 * 109.47031 * 65.22237 * 20 19 18 22 22 C 1.46851 * 111.20083 * 298.25631 * 18 17 16 23 23 H 1.09005 * 109.46850 * 63.52068 * 1 2 3 24 24 H 1.09004 * 109.47294 * 183.51360 * 1 2 3 25 25 H 1.08998 * 109.47158 * 303.52107 * 1 2 3 26 26 H 0.96997 * 120.00225 * 179.97438 * 7 6 4 27 27 H 1.00894 * 111.00316 * 327.71715 * 12 2 1 28 28 H 1.08991 * 109.52167 * 297.49683 * 15 13 12 29 29 H 1.09000 * 109.52448 * 57.69026 * 15 13 12 30 30 H 1.08998 * 109.50198 * 62.28368 * 16 15 13 31 31 H 1.08996 * 109.49937 * 182.36405 * 16 15 13 32 32 H 1.09003 * 109.46401 * 299.16248 * 17 16 15 33 33 H 1.08999 * 109.46145 * 179.19632 * 17 16 15 34 34 H 1.09000 * 109.47044 * 80.31746 * 19 18 17 35 35 H 1.08997 * 109.47160 * 320.31500 * 19 18 17 36 36 H 1.08993 * 109.47081 * 305.21690 * 20 19 18 37 37 H 1.09001 * 109.46898 * 185.21374 * 20 19 18 38 38 H 0.96694 * 114.00178 * 180.02562 * 21 20 19 39 39 H 1.09000 * 109.46435 * 181.76027 * 22 18 17 40 40 H 1.09002 * 109.46141 * 301.72852 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3226 -1.1197 -4.0079 9 1 3.1475 -2.2865 -3.6036 10 1 1.1679 -1.5867 -4.8165 11 1 3.1474 -0.1860 -4.8160 12 7 2.0196 -0.6925 1.1995 13 6 3.3785 -0.2529 1.5433 14 1 3.9343 -0.0406 0.6300 15 6 3.3044 1.0118 2.4033 16 6 4.7214 1.4287 2.8070 17 6 5.3933 0.2756 3.5560 18 7 5.4403 -0.9101 2.6911 19 6 6.2014 -1.9947 3.3255 20 6 6.6634 -2.9867 2.2562 21 8 7.5900 -2.3439 1.3786 22 6 4.0893 -1.3573 2.3290 23 1 -0.3633 0.4582 -0.9199 24 1 -0.3634 -1.0258 0.0630 25 1 -0.3633 0.5675 0.8567 26 1 0.7089 1.1612 -3.4844 27 1 1.3893 -0.5599 1.9761 28 1 2.8376 1.8140 1.8319 29 1 2.7153 0.8100 3.2979 30 1 5.2987 1.6679 1.9140 31 1 4.6725 2.3044 3.4542 32 1 4.8231 0.0460 4.4562 33 1 6.4074 0.5640 3.8324 34 1 5.5678 -2.5086 4.0484 35 1 7.0706 -1.5788 3.8351 36 1 5.8020 -3.3326 1.6851 37 1 7.1474 -3.8379 2.7352 38 1 7.9252 -2.9148 0.6738 39 1 4.1563 -2.2549 1.7142 40 1 3.5252 -1.5792 3.2349 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380216858.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:05 Heat of formation + Delta-G solvation = -75.732441 kcal Electronic energy + Delta-G solvation = -18486.480874 eV Core-core repulsion = 15720.664132 eV Total energy + Delta-G solvation = -2765.816742 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.31473 -37.98081 -36.98399 -34.83444 -33.56299 -31.62142 -29.66941 -28.26502 -27.25234 -25.15171 -23.19954 -22.38897 -21.98653 -20.66291 -18.32179 -18.21672 -17.30561 -16.82764 -16.07668 -15.72415 -15.60467 -15.27785 -15.13214 -14.70740 -14.52352 -14.16600 -13.75764 -13.53642 -13.25840 -13.03765 -12.87171 -12.62316 -12.42004 -12.29874 -12.07628 -12.05285 -11.96149 -11.72545 -11.41611 -11.20668 -11.03502 -10.77219 -10.49790 -9.15589 -8.95242 -8.08217 -6.19286 1.39520 1.40878 1.53334 2.43639 2.87414 3.18484 3.51117 3.70843 3.92360 3.94962 4.10125 4.28082 4.35863 4.42790 4.52030 4.54698 4.64652 4.66849 4.78623 4.81504 4.82625 4.88768 4.97575 5.02265 5.04644 5.09323 5.17043 5.29248 5.41485 5.53246 5.72676 5.87711 6.19328 6.25632 6.34462 6.50824 6.93907 7.01092 7.01719 7.49850 8.96426 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.020958 B = 0.007079 C = 0.005845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.706414 B = 3954.250566 C = 4789.098710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.220 3.780 3 H -0.032 1.032 4 C -0.505 4.505 5 H 0.047 0.953 6 C 0.007 3.993 7 N -0.923 5.923 8 Si 0.956 3.044 9 H -0.271 1.271 10 H -0.277 1.277 11 H -0.282 1.282 12 N -0.682 5.682 13 C 0.102 3.898 14 H 0.043 0.957 15 C -0.141 4.141 16 C -0.108 4.108 17 C 0.063 3.937 18 N -0.550 5.550 19 C 0.055 3.945 20 C 0.079 3.921 21 O -0.584 6.584 22 C 0.086 3.914 23 H 0.063 0.937 24 H 0.036 0.964 25 H 0.030 0.970 26 H 0.260 0.740 27 H 0.327 0.673 28 H 0.039 0.961 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.086 0.914 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.033 0.967 37 H 0.072 0.928 38 H 0.388 0.612 39 H 0.061 0.939 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.365 -4.579 13.340 16.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.112 3.888 3 H -0.014 1.014 4 C -0.544 4.544 5 H 0.065 0.935 6 C -0.191 4.191 7 N -0.564 5.564 8 Si 0.782 3.218 9 H -0.195 1.195 10 H -0.203 1.203 11 H -0.208 1.208 12 N -0.311 5.311 13 C -0.009 4.009 14 H 0.062 0.938 15 C -0.181 4.181 16 C -0.147 4.147 17 C -0.065 4.065 18 N -0.275 5.275 19 C -0.073 4.073 20 C 0.001 3.999 21 O -0.391 6.391 22 C -0.043 4.043 23 H 0.082 0.918 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.144 0.856 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.060 0.940 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.052 0.948 37 H 0.090 0.910 38 H 0.236 0.764 39 H 0.080 0.920 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 9.614 -4.408 12.814 16.615 hybrid contribution -0.506 0.024 -0.558 0.753 sum 9.108 -4.384 12.257 15.887 Atomic orbital electron populations 1.21762 0.97592 0.99254 1.00526 1.18899 0.91898 0.90298 0.87748 1.01398 1.21436 1.30078 1.11712 0.91198 0.93478 1.25692 0.95660 0.95914 1.01798 1.70006 1.38229 1.24326 1.23819 0.85535 0.78166 0.78612 0.79504 1.19529 1.20298 1.20807 1.60536 1.02554 1.61377 1.06683 1.21319 0.90184 0.92799 0.96565 0.93823 1.22234 0.98262 0.98059 0.99502 1.21497 0.94569 0.98161 1.00427 1.22089 1.00954 0.89973 0.93465 1.61719 1.14927 1.06503 1.44397 1.22207 0.97863 0.92354 0.94880 1.22274 0.91661 0.94371 0.91613 1.86524 1.63065 1.43819 1.45699 1.21829 0.87630 0.97064 0.97761 0.91836 0.94534 0.95127 0.93048 0.85575 0.94179 0.91060 0.93121 0.89549 0.93954 0.89635 0.91870 0.89515 0.94843 0.90963 0.76387 0.92026 0.94411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.55 9.01 71.98 0.65 -5.91 16 2 C 0.22 11.47 2.43 44.17 0.11 11.58 16 3 H -0.03 -1.83 7.19 -2.39 -0.02 -1.85 16 4 C -0.51 -29.18 8.43 25.60 0.22 -28.97 16 5 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 6 C 0.01 0.40 5.30 84.65 0.45 0.85 16 7 N -0.92 -54.63 11.30 21.45 0.24 -54.39 16 8 Si 0.96 45.54 29.54 68.60 2.03 47.57 16 9 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 12 N -0.68 -29.50 6.04 -473.03 -2.86 -32.36 16 13 C 0.10 4.02 2.43 44.97 0.11 4.13 16 14 H 0.04 2.12 7.59 -2.39 -0.02 2.11 16 15 C -0.14 -4.70 5.24 30.68 0.16 -4.53 16 16 C -0.11 -3.02 6.09 30.65 0.19 -2.83 16 17 C 0.06 1.55 5.42 86.33 0.47 2.02 16 18 N -0.55 -15.98 4.53 -896.34 -4.06 -20.05 16 19 C 0.05 1.24 5.39 86.30 0.47 1.71 16 20 C 0.08 1.78 7.24 71.98 0.52 2.30 16 21 O -0.58 -15.27 13.61 -148.98 -2.03 -17.30 16 22 C 0.09 2.81 4.90 86.33 0.42 3.23 16 23 H 0.06 3.49 5.98 -2.38 -0.01 3.47 16 24 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 27 H 0.33 12.56 8.09 -89.70 -0.73 11.84 16 28 H 0.04 1.50 7.50 -2.39 -0.02 1.49 16 29 H 0.07 2.08 8.10 -2.39 -0.02 2.06 16 30 H 0.05 1.62 8.14 -2.39 -0.02 1.61 16 31 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.09 1.86 7.93 -2.39 -0.02 1.84 16 34 H 0.06 1.22 7.99 -2.39 -0.02 1.20 16 35 H 0.09 1.79 7.79 -2.39 -0.02 1.77 16 36 H 0.03 0.85 6.71 -2.39 -0.02 0.84 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.39 6.85 9.12 -74.06 -0.68 6.17 16 39 H 0.06 2.21 6.66 -2.39 -0.02 2.19 16 40 H 0.04 1.12 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -66.73 312.00 -3.31 -70.04 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: -0.38 Total: 22.91 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: 3.75 Total: -16.43 kcal Atomic # 7 Polarization: -100.12 SS G_CDS: -6.68 Total: -106.80 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -2.03 Total: -17.30 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -66.73 -3.31 -70.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380216858.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.688 kcal (2) G-P(sol) polarization free energy of solvation -66.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds