Wall clock time and date at job start Mon Mar 30 2020 05:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46797 * 2 1 4 4 C 1.50700 * 109.47194 * 120.00476 * 2 1 3 5 5 H 1.08001 * 120.00190 * 120.00316 * 4 2 1 6 6 C 1.37875 * 119.99684 * 299.99708 * 4 2 1 7 7 N 1.31520 * 120.00264 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99865 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46850 * 60.00508 * 8 6 4 10 10 H 1.48501 * 109.46855 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47544 * 300.00445 * 8 6 4 12 12 N 1.46909 * 109.47121 * 240.00258 * 2 1 3 13 13 C 1.46897 * 110.99652 * 84.99712 * 12 2 1 14 14 H 1.08998 * 109.50553 * 325.07751 * 13 12 2 15 15 C 1.53128 * 109.50132 * 85.19783 * 13 12 2 16 16 C 1.53123 * 109.15573 * 177.59196 * 15 13 12 17 17 C 1.53035 * 109.27743 * 302.34319 * 16 15 13 18 18 N 1.46841 * 109.52395 * 59.18805 * 17 16 15 19 19 C 1.46900 * 111.00054 * 174.15920 * 18 17 16 20 20 C 1.52994 * 109.47637 * 48.39237 * 19 18 17 21 21 O 1.42902 * 109.47227 * 66.28639 * 20 19 18 22 22 C 1.46849 * 111.19512 * 298.25338 * 18 17 16 23 23 H 1.09002 * 109.46797 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47302 * 299.99596 * 1 2 3 25 25 H 1.08996 * 109.47092 * 59.99936 * 1 2 3 26 26 H 0.97002 * 119.99598 * 180.02562 * 7 6 4 27 27 H 1.00896 * 110.99516 * 208.95221 * 12 2 1 28 28 H 1.08991 * 109.52450 * 297.49642 * 15 13 12 29 29 H 1.08994 * 109.51951 * 57.69291 * 15 13 12 30 30 H 1.09008 * 109.49810 * 182.40509 * 16 15 13 31 31 H 1.08995 * 109.53548 * 62.30917 * 16 15 13 32 32 H 1.09000 * 109.46661 * 299.16408 * 17 16 15 33 33 H 1.09007 * 109.44781 * 179.19629 * 17 16 15 34 34 H 1.09009 * 109.47181 * 168.39495 * 19 18 17 35 35 H 1.09007 * 109.47085 * 288.39081 * 19 18 17 36 36 H 1.08996 * 109.47908 * 186.28716 * 20 19 18 37 37 H 1.09002 * 109.47034 * 306.29232 * 20 19 18 38 38 H 0.96692 * 114.00087 * 180.02562 * 21 20 19 39 39 H 1.09004 * 109.46246 * 301.72345 * 22 18 17 40 40 H 1.08999 * 109.46406 * 181.76117 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3226 -1.1197 4.0078 9 1 3.8076 -1.1190 4.0076 10 1 1.8270 -0.4201 5.2204 11 1 1.8283 -2.5200 4.0081 12 7 2.0197 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 1 1.2585 0.9341 -2.2904 15 6 3.4140 0.9785 -2.3258 16 6 3.4967 1.8852 -3.5569 17 6 3.3504 1.0352 -4.8211 18 7 2.0609 0.3333 -4.7939 19 6 1.8250 -0.3834 -6.0543 20 6 3.0692 -1.1951 -6.4202 21 8 3.2618 -2.2323 -5.4562 22 6 1.9770 -0.5790 -3.6462 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 0.7089 1.1611 3.4845 27 1 2.9173 -1.1204 -1.0288 28 1 3.4744 1.5849 -1.4221 29 1 4.2379 0.2652 -2.3427 30 1 4.4607 2.3939 -3.5700 31 1 2.6960 2.6237 -3.5201 32 1 4.1598 0.3065 -4.8646 33 1 3.3945 1.6799 -5.6990 34 1 0.9745 -1.0552 -5.9367 35 1 1.6137 0.3348 -6.8467 36 1 2.9374 -1.6370 -7.4078 37 1 3.9406 -0.5404 -6.4284 38 1 4.0348 -2.7879 -5.6255 39 1 2.7929 -1.3002 -3.6952 40 1 1.0238 -1.1070 -3.6708 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380216866.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:08 Heat of formation + Delta-G solvation = -74.376772 kcal Electronic energy + Delta-G solvation = -18546.681859 eV Core-core repulsion = 15780.923904 eV Total energy + Delta-G solvation = -2765.757955 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.51852 -38.14502 -36.79712 -34.85428 -33.48648 -31.49851 -29.64893 -28.25246 -27.21489 -25.27453 -23.54204 -22.60093 -21.40998 -20.55244 -18.59604 -18.30296 -17.09115 -16.89237 -16.20526 -15.86316 -15.55647 -15.38127 -15.22149 -14.46324 -14.18631 -13.93796 -13.76897 -13.43688 -13.32652 -13.03231 -12.83458 -12.77553 -12.46761 -12.24059 -12.14888 -12.11208 -12.03410 -11.76089 -11.43756 -11.22064 -10.89296 -10.77219 -10.55519 -9.11079 -8.93082 -8.12060 -6.26506 1.42190 1.44826 1.52370 2.42006 2.94758 3.16268 3.44035 3.78858 3.93819 3.96302 4.14635 4.23425 4.29772 4.43516 4.48275 4.59554 4.65959 4.77250 4.79662 4.85187 4.88041 5.00566 5.04906 5.08382 5.09204 5.18752 5.24354 5.34614 5.42194 5.53248 5.70219 5.86218 6.20586 6.22442 6.28144 6.52367 6.81163 6.90328 7.03439 7.43858 8.93679 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.037419 B = 0.005324 C = 0.005181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.099162 B = 5258.364980 C = 5403.486475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.222 3.778 3 H -0.031 1.031 4 C -0.538 4.538 5 H 0.058 0.942 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.964 3.036 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.272 1.272 12 N -0.683 5.683 13 C 0.093 3.907 14 H 0.047 0.953 15 C -0.141 4.141 16 C -0.108 4.108 17 C 0.059 3.941 18 N -0.547 5.547 19 C 0.051 3.949 20 C 0.037 3.963 21 O -0.588 6.588 22 C 0.087 3.913 23 H 0.026 0.974 24 H 0.057 0.943 25 H 0.016 0.984 26 H 0.262 0.738 27 H 0.331 0.669 28 H 0.036 0.964 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.040 0.960 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.388 0.612 39 H 0.057 0.943 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.766 -1.288 -18.305 19.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.113 3.887 3 H -0.013 1.013 4 C -0.576 4.576 5 H 0.076 0.924 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.789 3.211 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.197 1.197 12 N -0.313 5.313 13 C -0.018 4.018 14 H 0.066 0.934 15 C -0.180 4.180 16 C -0.147 4.147 17 C -0.068 4.068 18 N -0.272 5.272 19 C -0.077 4.077 20 C -0.042 4.042 21 O -0.396 6.396 22 C -0.041 4.041 23 H 0.045 0.955 24 H 0.076 0.924 25 H 0.035 0.965 26 H 0.072 0.928 27 H 0.148 0.852 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.112 0.888 34 H 0.086 0.914 35 H 0.128 0.872 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.238 0.762 39 H 0.075 0.925 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.135 -0.806 -18.025 18.759 hybrid contribution 1.828 -0.528 1.064 2.180 sum 6.964 -1.334 -16.960 18.383 Atomic orbital electron populations 1.21553 0.98160 0.98655 0.98723 1.18832 0.92294 0.90781 0.86780 1.01347 1.21555 1.31737 1.12673 0.91651 0.92362 1.25755 0.95146 0.95673 1.02068 1.70033 1.37445 1.24118 1.24198 0.85521 0.78719 0.78616 0.78199 1.19520 1.20851 1.19675 1.60598 1.32078 1.33219 1.05370 1.21527 0.95854 0.93106 0.91321 0.93446 1.22201 0.98152 0.99247 0.98421 1.21522 1.02218 0.97587 0.93358 1.22134 0.89660 0.96670 0.98370 1.62016 1.32922 1.29493 1.02738 1.22425 0.97039 0.96320 0.91920 1.23039 0.99065 0.89874 0.92176 1.86614 1.52927 1.47256 1.52774 1.21850 1.00982 0.93101 0.88158 0.95475 0.92393 0.96527 0.92845 0.85208 0.94493 0.92136 0.89893 0.92262 0.94182 0.88808 0.91376 0.87159 0.91580 0.92354 0.76241 0.92535 0.93150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -6.03 9.18 71.98 0.66 -5.37 16 2 C 0.22 11.94 2.42 44.17 0.11 12.05 16 3 H -0.03 -1.84 7.15 -2.39 -0.02 -1.86 16 4 C -0.54 -30.64 8.59 25.60 0.22 -30.42 16 5 H 0.06 3.24 7.62 -2.91 -0.02 3.22 16 6 C 0.01 0.72 5.30 84.65 0.45 1.17 16 7 N -0.92 -54.46 11.32 21.45 0.24 -54.22 16 8 Si 0.96 44.43 29.54 68.60 2.03 46.45 16 9 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 12 N -0.68 -31.18 6.05 -473.01 -2.86 -34.04 16 13 C 0.09 3.64 2.44 44.97 0.11 3.75 16 14 H 0.05 2.10 7.12 -2.39 -0.02 2.08 16 15 C -0.14 -4.88 5.24 30.68 0.16 -4.72 16 16 C -0.11 -2.91 6.09 30.65 0.19 -2.72 16 17 C 0.06 1.35 4.49 86.33 0.39 1.74 16 18 N -0.55 -14.79 4.86 -896.36 -4.36 -19.15 16 19 C 0.05 1.05 6.01 86.30 0.52 1.57 16 20 C 0.04 0.62 6.63 71.98 0.48 1.10 16 21 O -0.59 -12.37 10.89 -148.98 -1.62 -13.99 16 22 C 0.09 2.94 4.57 86.32 0.39 3.33 16 23 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.06 3.35 6.07 -2.39 -0.01 3.33 16 25 H 0.02 0.80 7.43 -2.39 -0.02 0.78 16 26 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 27 H 0.33 14.77 7.94 -89.70 -0.71 14.06 16 28 H 0.04 1.47 7.48 -2.39 -0.02 1.45 16 29 H 0.06 2.00 8.10 -2.39 -0.02 1.98 16 30 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.04 0.89 6.45 -2.39 -0.02 0.88 16 33 H 0.09 1.67 8.12 -2.38 -0.02 1.65 16 34 H 0.07 1.58 7.87 -2.38 -0.02 1.56 16 35 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.06 0.87 6.05 -2.39 -0.01 0.85 16 38 H 0.39 4.85 9.12 -74.06 -0.68 4.18 16 39 H 0.06 1.92 5.79 -2.39 -0.01 1.90 16 40 H 0.05 1.87 7.96 -2.39 -0.02 1.86 16 Total: -1.00 -65.76 304.22 -3.26 -69.02 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: -0.36 Total: 24.44 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: 3.67 Total: -18.52 kcal Atomic # 7 Polarization: -100.43 SS G_CDS: -6.98 Total: -107.41 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -1.62 Total: -13.99 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -65.76 -3.26 -69.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380216866.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.356 kcal (2) G-P(sol) polarization free energy of solvation -65.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds