Wall clock time and date at job start Mon Mar 30 2020 05:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47414 * 2 1 4 4 C 1.50698 * 109.46879 * 119.99872 * 2 1 3 5 5 H 1.08006 * 119.99634 * 120.00085 * 4 2 1 6 6 C 1.37874 * 120.00286 * 300.00008 * 4 2 1 7 7 N 1.31514 * 119.99974 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00272 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47005 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47289 * 119.99522 * 8 6 4 11 11 H 1.48494 * 109.47195 * 240.00265 * 8 6 4 12 12 N 1.46900 * 109.46920 * 239.99911 * 2 1 3 13 13 C 1.46900 * 111.00230 * 86.25431 * 12 2 1 14 14 H 1.09007 * 109.53292 * 325.98599 * 13 12 2 15 15 C 1.53117 * 109.50460 * 205.88693 * 13 12 2 16 16 C 1.53116 * 109.21382 * 182.36700 * 15 13 12 17 17 C 1.53181 * 109.20345 * 57.62961 * 16 15 13 18 18 N 1.46851 * 109.55449 * 300.85801 * 17 16 15 19 19 C 1.46892 * 110.99795 * 185.84164 * 18 17 16 20 20 C 1.53002 * 109.47258 * 65.79208 * 19 18 17 21 21 O 1.42895 * 109.47378 * 64.99835 * 20 19 18 22 22 C 1.46848 * 111.19950 * 61.74189 * 18 17 16 23 23 H 1.09001 * 109.47356 * 65.59764 * 1 2 3 24 24 H 1.08992 * 109.47572 * 185.59687 * 1 2 3 25 25 H 1.09001 * 109.47348 * 305.59866 * 1 2 3 26 26 H 0.96996 * 119.99883 * 180.02562 * 7 6 4 27 27 H 1.00899 * 111.00090 * 322.29955 * 12 2 1 28 28 H 1.08995 * 109.52196 * 302.31151 * 15 13 12 29 29 H 1.09004 * 109.52292 * 62.43443 * 15 13 12 30 30 H 1.08994 * 109.50616 * 177.62487 * 16 15 13 31 31 H 1.08994 * 109.50894 * 297.74940 * 16 15 13 32 32 H 1.08995 * 109.44113 * 180.83600 * 17 16 15 33 33 H 1.08994 * 109.43719 * 60.87577 * 17 16 15 34 34 H 1.09003 * 109.47048 * 185.79158 * 19 18 17 35 35 H 1.08995 * 109.47529 * 305.78955 * 19 18 17 36 36 H 1.09005 * 109.47400 * 184.99947 * 20 19 18 37 37 H 1.08999 * 109.47092 * 304.99685 * 20 19 18 38 38 H 0.96704 * 113.99988 * 180.02562 * 21 20 19 39 39 H 1.08995 * 109.46143 * 178.24187 * 22 18 17 40 40 H 1.09007 * 109.45057 * 58.26620 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.1473 -2.2863 3.6038 10 1 3.1472 -0.1858 4.8160 11 1 1.1677 -1.5866 4.8165 12 7 2.0196 -0.6925 -1.1994 13 6 2.1106 0.2295 -2.3394 14 1 1.3088 0.9653 -2.2780 15 6 1.9822 -0.5587 -3.6459 16 6 2.1370 0.3998 -4.8299 17 6 3.4901 1.1107 -4.7290 18 7 3.5633 1.8507 -3.4627 19 6 4.7899 2.6560 -3.3938 20 6 4.7408 3.7523 -4.4600 21 8 3.6765 4.6583 -4.1630 22 6 3.4634 0.9444 -2.3116 23 1 -0.3634 0.4246 -0.9358 24 1 -0.3634 -1.0227 0.1002 25 1 -0.3634 0.5982 0.8356 26 1 0.7087 1.1612 3.4844 27 1 1.4375 -1.4861 -1.4218 28 1 2.7604 -1.3206 -3.6897 29 1 1.0029 -1.0354 -3.6889 30 1 2.0884 -0.1627 -5.7622 31 1 1.3357 1.1383 -4.8076 32 1 3.5981 1.8051 -5.5622 33 1 4.2912 0.3726 -4.7651 34 1 4.8701 3.1122 -2.4071 35 1 5.6548 2.0165 -3.5698 36 1 5.6870 4.2935 -4.4686 37 1 4.5716 3.3009 -5.4377 38 1 3.5860 5.3808 -4.7994 39 1 3.5521 1.5181 -1.3890 40 1 4.2649 0.2071 -2.3594 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380216874.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:15 Heat of formation + Delta-G solvation = -50.181013 kcal Electronic energy + Delta-G solvation = -18362.271414 eV Core-core repulsion = 15597.562666 eV Total energy + Delta-G solvation = -2764.708749 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.05753 -36.86968 -35.45289 -33.27997 -32.00539 -29.80143 -28.70981 -26.48941 -25.04541 -23.96042 -22.49629 -20.89968 -19.83533 -19.33573 -17.43766 -16.39610 -15.97533 -15.03613 -14.72351 -14.54483 -14.22803 -14.01076 -13.66680 -13.20682 -12.94249 -12.47350 -12.34294 -12.06345 -11.87257 -11.54378 -11.35681 -11.04379 -10.91725 -10.75311 -10.68782 -10.32901 -10.28306 -10.05666 -9.96272 -9.92899 -9.53998 -8.87099 -8.30331 -7.99389 -7.16109 -5.91636 -3.94291 3.35444 3.42952 3.48253 4.03020 4.30515 4.50001 4.97078 5.06046 5.10876 5.23911 5.27834 5.36423 5.40166 5.47035 5.59100 5.72322 5.74122 5.90111 5.98133 6.02409 6.12780 6.21047 6.29246 6.36133 6.66648 6.74630 6.79352 6.92363 7.20526 7.33591 7.36387 7.54205 7.69985 7.81387 7.97462 8.36477 8.63711 8.71160 9.13356 9.70744 11.15799 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.027177 B = 0.005694 C = 0.005212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.045978 B = 4916.529736 C = 5370.579554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.211 3.789 3 H 0.035 0.965 4 C -0.493 4.493 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.897 5.897 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.286 1.286 12 N -0.683 5.683 13 C 0.094 3.906 14 H 0.045 0.955 15 C -0.122 4.122 16 C -0.112 4.112 17 C 0.055 3.945 18 N -0.530 5.530 19 C 0.055 3.945 20 C 0.081 3.919 21 O -0.555 6.555 22 C 0.073 3.927 23 H 0.005 0.995 24 H 0.028 0.972 25 H 0.084 0.916 26 H 0.258 0.742 27 H 0.327 0.673 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.028 0.972 34 H 0.083 0.917 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.043 0.957 38 H 0.370 0.630 39 H 0.077 0.923 40 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.478 3.171 -15.860 17.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.103 3.897 3 H 0.052 0.948 4 C -0.532 4.532 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.537 5.537 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.213 1.213 12 N -0.313 5.313 13 C -0.017 4.017 14 H 0.063 0.937 15 C -0.160 4.160 16 C -0.150 4.150 17 C -0.073 4.073 18 N -0.256 5.256 19 C -0.073 4.073 20 C 0.003 3.997 21 O -0.358 6.358 22 C -0.055 4.055 23 H 0.024 0.976 24 H 0.047 0.953 25 H 0.103 0.897 26 H 0.068 0.932 27 H 0.144 0.856 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.046 0.954 34 H 0.102 0.898 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.215 0.785 39 H 0.096 0.904 40 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 5.599 3.250 -14.995 16.333 hybrid contribution 0.120 -0.460 0.191 0.512 sum 5.719 2.790 -14.805 16.114 Atomic orbital electron populations 1.22400 1.00743 0.99959 0.99362 1.19211 0.89546 0.94409 0.86488 0.94753 1.21206 1.30052 1.12299 0.89650 0.92008 1.24956 0.95421 0.95221 0.98992 1.69917 1.37427 1.23230 1.23113 0.86484 0.78477 0.79642 0.83032 1.19810 1.21211 1.21270 1.60705 1.57407 1.09577 1.03637 1.21332 0.96008 0.94313 0.90063 0.93698 1.21788 1.01480 0.98004 0.94753 1.21542 0.97461 0.98330 0.97703 1.22133 0.97020 0.95722 0.92448 1.61787 1.36308 1.25136 1.02331 1.22093 0.91005 0.93963 1.00280 1.22224 0.89239 0.90774 0.97480 1.86685 1.53857 1.41308 1.53996 1.22043 0.97305 0.93741 0.92393 0.97642 0.95254 0.89711 0.93210 0.85609 0.91858 0.92302 0.91995 0.91262 0.91370 0.95416 0.89828 0.93787 0.93835 0.93877 0.78517 0.90407 0.94763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 8.85 37.16 0.33 -3.79 16 2 C 0.21 5.44 2.38 -68.87 -0.16 5.28 16 3 H 0.03 0.98 7.20 -51.93 -0.37 0.61 16 4 C -0.49 -13.91 8.84 -34.44 -0.30 -14.21 16 5 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 6 C 0.05 1.54 5.30 -17.82 -0.09 1.45 16 7 N -0.90 -26.30 11.38 55.43 0.63 -25.67 16 8 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 9 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 N -0.68 -14.83 6.05 -100.87 -0.61 -15.44 16 13 C 0.09 1.77 2.44 -67.63 -0.17 1.60 16 14 H 0.05 0.95 7.20 -51.92 -0.37 0.58 16 15 C -0.12 -1.85 5.25 -26.61 -0.14 -1.99 16 16 C -0.11 -1.47 6.11 -26.58 -0.16 -1.63 16 17 C 0.05 0.72 5.30 -3.76 -0.02 0.70 16 18 N -0.53 -8.32 4.61 -234.59 -1.08 -9.40 16 19 C 0.05 0.74 5.34 -3.83 -0.02 0.72 16 20 C 0.08 0.88 7.11 37.16 0.26 1.15 16 21 O -0.55 -7.02 13.61 -35.23 -0.48 -7.50 16 22 C 0.07 1.34 4.96 -3.83 -0.02 1.32 16 23 H 0.00 0.11 7.49 -51.93 -0.39 -0.28 16 24 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.08 2.33 6.24 -51.93 -0.32 2.00 16 26 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 27 H 0.33 6.74 8.08 -39.29 -0.32 6.42 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.79 6.12 -51.93 -0.32 0.47 16 33 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 1.23 7.99 -51.93 -0.41 0.82 16 35 H 0.04 0.53 8.12 -51.93 -0.42 0.11 16 36 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.04 0.42 6.22 -51.93 -0.32 0.10 16 38 H 0.37 2.77 9.12 45.56 0.42 3.19 16 39 H 0.08 1.63 7.41 -51.93 -0.38 1.24 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 310.82 15.07 4.68 4.68 Total: -1.00 -31.05 310.82 -8.52 -39.58 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -6.15 Total: 6.29 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -0.50 Total: -9.41 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: -1.06 Total: -50.51 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.48 Total: -7.50 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.05 -8.52 -39.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380216874.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.605 kcal (2) G-P(sol) polarization free energy of solvation -31.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds