Wall clock time and date at job start Mon Mar 30 2020 04:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.50237 * 2 1 4 4 C 1.53096 * 109.50511 * 239.91886 * 2 1 3 5 5 N 1.47026 * 109.25404 * 183.17528 * 4 2 1 6 6 C 1.46902 * 110.99718 * 182.39280 * 5 4 2 7 7 C 1.52996 * 109.46838 * 169.99985 * 6 5 4 8 8 N 1.46897 * 109.47183 * 179.97438 * 7 6 5 9 9 C 1.46904 * 111.00343 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.46891 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00599 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99675 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00210 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 120.00019 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.46845 * 269.99914 * 14 12 10 16 16 H 1.48503 * 109.47399 * 29.99403 * 14 12 10 17 17 H 1.48498 * 109.47295 * 150.00010 * 14 12 10 18 18 C 1.47006 * 110.75302 * 58.61155 * 5 4 2 19 19 C 1.53097 * 109.25977 * 301.38615 * 18 5 4 20 20 H 1.09002 * 109.50774 * 176.78513 * 19 18 5 21 21 C 1.53000 * 109.54191 * 296.89035 * 19 18 5 22 22 O 1.43008 * 109.53969 * 120.11117 * 2 1 3 23 23 H 1.08994 * 109.47296 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47209 * 300.08637 * 1 2 3 25 25 H 1.09002 * 109.46823 * 60.08489 * 1 2 3 26 26 H 1.08998 * 109.51431 * 63.24004 * 4 2 1 27 27 H 1.09000 * 109.54108 * 303.12319 * 4 2 1 28 28 H 1.08995 * 109.47179 * 49.99473 * 6 5 4 29 29 H 1.09000 * 109.46707 * 289.99419 * 6 5 4 30 30 H 1.08996 * 109.47227 * 59.99455 * 7 6 5 31 31 H 1.09005 * 109.47272 * 299.99605 * 7 6 5 32 32 H 1.00905 * 111.00193 * 56.04181 * 8 7 6 33 33 H 1.08995 * 109.46715 * 60.00190 * 9 8 7 34 34 H 1.09007 * 109.46476 * 300.00043 * 9 8 7 35 35 H 0.96998 * 119.99640 * 180.02562 * 13 12 10 36 36 H 1.09003 * 109.50579 * 61.32158 * 18 5 4 37 37 H 1.09006 * 109.50733 * 181.44947 * 18 5 4 38 38 H 1.08996 * 109.47465 * 179.80597 * 21 19 18 39 39 H 1.09001 * 109.47351 * 299.80413 * 21 19 18 40 40 H 1.09001 * 109.47139 * 59.80221 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7233 -1.2487 5 7 3.5094 -0.7870 -1.2052 6 6 4.0447 -1.4248 -2.4155 7 6 5.5644 -1.2517 -2.4535 8 7 6.0998 -1.8900 -3.6633 9 6 7.5598 -1.7430 -3.7340 10 6 8.0715 -2.4081 -4.9857 11 1 7.3813 -2.8913 -5.6614 12 6 9.4209 -2.3989 -5.2689 13 7 9.8676 -2.9797 -6.3610 14 14 10.6147 -1.5626 -4.1007 15 1 10.7756 -0.1393 -4.4926 16 1 10.0859 -1.6376 -2.7150 17 1 11.9316 -2.2458 -4.1657 18 6 3.9649 -1.4868 0.0047 19 6 3.4343 -0.7558 1.2408 20 1 3.7216 -1.3031 2.1386 21 6 4.0228 0.6555 1.2927 22 8 2.0083 -0.6761 1.1658 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5152 0.8892 25 1 -0.3633 0.5125 -0.8908 26 1 1.7267 -0.1790 -2.1392 27 1 1.6338 -1.7339 -1.2771 28 1 3.6038 -0.9593 -3.2969 29 1 3.8002 -2.4870 -2.4048 30 1 6.0053 -1.7172 -1.5720 31 1 5.8090 -0.1895 -2.4641 32 1 5.6589 -1.5207 -4.4924 33 1 8.0147 -2.2114 -2.8613 34 1 7.8177 -0.6841 -3.7542 35 1 10.8170 -2.9735 -6.5600 36 1 3.5882 -2.5096 -0.0029 37 1 5.0546 -1.4998 0.0293 38 1 3.6417 1.1761 2.1712 39 1 5.1096 0.5941 1.3498 40 1 3.7366 1.2018 0.3939 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380271157.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:04 Heat of formation + Delta-G solvation = -44.208257 kcal Electronic energy + Delta-G solvation = -17895.281193 eV Core-core repulsion = 15130.831442 eV Total energy + Delta-G solvation = -2764.449751 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.12704 -36.70548 -34.83316 -33.55708 -32.41719 -30.62022 -29.02197 -27.03979 -26.35360 -23.74653 -23.02805 -21.11468 -20.92356 -19.58220 -16.82853 -16.62941 -16.46990 -15.59636 -15.44632 -14.77834 -14.60468 -14.47075 -13.94490 -13.18977 -13.13531 -12.92553 -12.71660 -12.49666 -12.27809 -12.16857 -12.02367 -11.85377 -11.64813 -11.35721 -11.26084 -10.81088 -10.54553 -10.47397 -10.29869 -9.83146 -9.63327 -9.29873 -8.61308 -8.40459 -7.51672 -6.07233 -4.05381 3.27695 3.35121 3.38006 3.52926 3.71138 4.40948 4.60418 4.70642 4.82364 4.92038 4.99187 5.14353 5.20819 5.22207 5.26150 5.31038 5.37036 5.42938 5.55918 5.59477 5.67127 5.76334 5.78607 5.84681 5.88922 5.94064 6.18131 6.19584 6.26607 6.75052 6.91087 6.93795 7.01692 7.08352 7.59097 7.86771 8.30447 8.63274 9.00474 9.54581 11.06069 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.043862 B = 0.004200 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.206599 B = 6665.138740 C = 7099.818146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.086 3.914 3 H 0.069 0.931 4 C 0.025 3.975 5 N -0.535 5.535 6 C 0.059 3.941 7 C 0.061 3.939 8 N -0.682 5.682 9 C 0.166 3.834 10 C -0.517 4.517 11 H 0.079 0.921 12 C 0.068 3.932 13 N -0.900 5.900 14 Si 0.879 3.121 15 H -0.277 1.277 16 H -0.267 1.267 17 H -0.285 1.285 18 C 0.020 3.980 19 C 0.090 3.910 20 H 0.103 0.897 21 C -0.175 4.175 22 O -0.380 6.380 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.044 0.956 30 H 0.063 0.937 31 H 0.027 0.973 32 H 0.335 0.665 33 H 0.026 0.974 34 H -0.020 1.020 35 H 0.264 0.736 36 H 0.043 0.957 37 H 0.090 0.910 38 H 0.055 0.945 39 H 0.065 0.935 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.377 7.299 14.797 23.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.028 3.972 3 H 0.087 0.913 4 C -0.104 4.104 5 N -0.260 5.260 6 C -0.069 4.069 7 C -0.069 4.069 8 N -0.313 5.313 9 C 0.038 3.962 10 C -0.555 4.555 11 H 0.097 0.903 12 C -0.134 4.134 13 N -0.539 5.539 14 Si 0.706 3.294 15 H -0.203 1.203 16 H -0.192 1.192 17 H -0.211 1.211 18 C -0.108 4.108 19 C 0.033 3.967 20 H 0.121 0.879 21 C -0.233 4.233 22 O -0.299 6.299 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.102 0.898 27 H 0.060 0.940 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.046 0.954 32 H 0.152 0.848 33 H 0.044 0.956 34 H -0.002 1.002 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.109 7.029 15.132 23.192 hybrid contribution 0.818 0.563 -0.005 0.993 sum -15.291 7.592 15.127 22.810 Atomic orbital electron populations 1.21746 0.93025 1.02884 1.02519 1.22143 0.94490 0.96046 0.84503 0.91335 1.22799 0.88220 1.00176 0.99183 1.62151 1.08228 1.53116 1.02492 1.22100 0.95960 0.97443 0.91392 1.21859 0.92777 0.96875 0.95394 1.60460 1.07495 1.60144 1.03157 1.19989 0.83765 0.94147 0.98282 1.21066 0.93319 1.35526 1.05616 0.90299 1.24914 0.98170 0.95145 0.95143 1.69901 1.14583 1.44279 1.25154 0.86804 0.80726 0.79796 0.82044 1.20302 1.19195 1.21114 1.22849 1.01714 0.95898 0.90339 1.22262 0.80542 0.96497 0.97433 0.87900 1.22278 1.01454 0.96980 1.02549 1.88011 1.20960 1.78173 1.42792 0.91937 0.91691 0.90984 0.89808 0.94026 0.90874 0.93799 0.91897 0.95442 0.84831 0.95638 1.00219 0.92622 0.93911 0.89137 0.92589 0.91595 0.90970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.57 37.16 0.36 -0.79 16 2 C 0.09 0.87 3.02 -26.68 -0.08 0.79 16 3 H 0.07 0.70 6.50 -51.93 -0.34 0.36 16 4 C 0.02 0.27 4.93 -3.71 -0.02 0.25 16 5 N -0.53 -6.70 4.10 -234.31 -0.96 -7.66 16 6 C 0.06 0.83 5.22 -3.83 -0.02 0.81 16 7 C 0.06 1.04 5.62 -3.83 -0.02 1.02 16 8 N -0.68 -14.22 6.49 -115.06 -0.75 -14.97 16 9 C 0.17 4.09 4.51 -4.97 -0.02 4.07 16 10 C -0.52 -14.96 9.87 -34.44 -0.34 -15.30 16 11 H 0.08 2.47 8.06 -52.49 -0.42 2.04 16 12 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 13 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 14 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 C 0.02 0.24 4.85 -3.72 -0.02 0.22 16 19 C 0.09 0.97 3.92 -26.68 -0.10 0.87 16 20 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 21 C -0.18 -1.76 8.89 37.16 0.33 -1.43 16 22 O -0.38 -4.48 10.28 -35.23 -0.36 -4.84 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 27 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.98 8.04 -51.93 -0.42 0.57 16 29 H 0.04 0.65 8.12 -51.93 -0.42 0.23 16 30 H 0.06 1.08 6.52 -51.93 -0.34 0.74 16 31 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.33 6.70 8.72 -39.29 -0.34 6.36 16 33 H 0.03 0.65 7.20 -51.93 -0.37 0.27 16 34 H -0.02 -0.49 7.57 -51.93 -0.39 -0.88 16 35 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 36 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.09 1.11 6.38 -51.93 -0.33 0.78 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.80 6.13 -51.93 -0.32 0.48 16 LS Contribution 311.82 15.07 4.70 4.70 Total: -1.00 -30.99 311.82 -8.39 -39.38 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -7.09 Total: 0.96 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -0.04 Total: -7.59 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: -0.93 Total: -49.69 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -0.36 Total: -4.84 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.99 -8.39 -39.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380271157.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.829 kcal (2) G-P(sol) polarization free energy of solvation -30.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds