Wall clock time and date at job start Mon Mar 30 2020 04:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.50237 * 2 1 4 4 C 1.53096 * 109.50511 * 239.91886 * 2 1 3 5 5 N 1.47026 * 109.25404 * 183.17528 * 4 2 1 6 6 C 1.46902 * 110.99718 * 182.39280 * 5 4 2 7 7 C 1.52996 * 109.46838 * 169.99985 * 6 5 4 8 8 N 1.46897 * 109.47183 * 179.97438 * 7 6 5 9 9 C 1.46904 * 111.00343 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.46891 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00599 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99675 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00210 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 120.00019 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.46845 * 269.99914 * 14 12 10 16 16 H 1.48503 * 109.47399 * 29.99403 * 14 12 10 17 17 H 1.48498 * 109.47295 * 150.00010 * 14 12 10 18 18 C 1.47006 * 110.75302 * 58.61155 * 5 4 2 19 19 C 1.53097 * 109.25977 * 301.38615 * 18 5 4 20 20 H 1.09002 * 109.50774 * 176.78513 * 19 18 5 21 21 C 1.53000 * 109.54191 * 296.89035 * 19 18 5 22 22 O 1.43008 * 109.53969 * 120.11117 * 2 1 3 23 23 H 1.08994 * 109.47296 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47209 * 300.08637 * 1 2 3 25 25 H 1.09002 * 109.46823 * 60.08489 * 1 2 3 26 26 H 1.08998 * 109.51431 * 63.24004 * 4 2 1 27 27 H 1.09000 * 109.54108 * 303.12319 * 4 2 1 28 28 H 1.08995 * 109.47179 * 49.99473 * 6 5 4 29 29 H 1.09000 * 109.46707 * 289.99419 * 6 5 4 30 30 H 1.08996 * 109.47227 * 59.99455 * 7 6 5 31 31 H 1.09005 * 109.47272 * 299.99605 * 7 6 5 32 32 H 1.00905 * 111.00193 * 56.04181 * 8 7 6 33 33 H 1.08995 * 109.46715 * 60.00190 * 9 8 7 34 34 H 1.09007 * 109.46476 * 300.00043 * 9 8 7 35 35 H 0.96998 * 119.99640 * 180.02562 * 13 12 10 36 36 H 1.09003 * 109.50579 * 61.32158 * 18 5 4 37 37 H 1.09006 * 109.50733 * 181.44947 * 18 5 4 38 38 H 1.08996 * 109.47465 * 179.80597 * 21 19 18 39 39 H 1.09001 * 109.47351 * 299.80413 * 21 19 18 40 40 H 1.09001 * 109.47139 * 59.80221 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7233 -1.2487 5 7 3.5094 -0.7870 -1.2052 6 6 4.0447 -1.4248 -2.4155 7 6 5.5644 -1.2517 -2.4535 8 7 6.0998 -1.8900 -3.6633 9 6 7.5598 -1.7430 -3.7340 10 6 8.0715 -2.4081 -4.9857 11 1 7.3813 -2.8913 -5.6614 12 6 9.4209 -2.3989 -5.2689 13 7 9.8676 -2.9797 -6.3610 14 14 10.6147 -1.5626 -4.1007 15 1 10.7756 -0.1393 -4.4926 16 1 10.0859 -1.6376 -2.7150 17 1 11.9316 -2.2458 -4.1657 18 6 3.9649 -1.4868 0.0047 19 6 3.4343 -0.7558 1.2408 20 1 3.7216 -1.3031 2.1386 21 6 4.0228 0.6555 1.2927 22 8 2.0083 -0.6761 1.1658 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5152 0.8892 25 1 -0.3633 0.5125 -0.8908 26 1 1.7267 -0.1790 -2.1392 27 1 1.6338 -1.7339 -1.2771 28 1 3.6038 -0.9593 -3.2969 29 1 3.8002 -2.4870 -2.4048 30 1 6.0053 -1.7172 -1.5720 31 1 5.8090 -0.1895 -2.4641 32 1 5.6589 -1.5207 -4.4924 33 1 8.0147 -2.2114 -2.8613 34 1 7.8177 -0.6841 -3.7542 35 1 10.8170 -2.9735 -6.5600 36 1 3.5882 -2.5096 -0.0029 37 1 5.0546 -1.4998 0.0293 38 1 3.6417 1.1761 2.1712 39 1 5.1096 0.5941 1.3498 40 1 3.7366 1.2018 0.3939 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380271157.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:03 Heat of formation + Delta-G solvation = -67.505495 kcal Electronic energy + Delta-G solvation = -17896.291437 eV Core-core repulsion = 15130.831442 eV Total energy + Delta-G solvation = -2765.459995 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.01549 -37.97777 -36.29993 -34.51181 -34.32307 -31.70096 -30.42300 -27.97315 -27.85652 -24.96746 -23.88191 -23.07424 -22.10805 -20.43725 -18.96997 -17.52361 -17.41558 -16.99649 -16.45611 -16.29487 -15.74801 -15.62761 -15.40625 -14.68239 -14.47896 -14.14676 -14.01508 -13.87493 -13.33342 -13.19359 -12.98807 -12.79168 -12.75258 -12.63329 -12.50760 -12.19797 -12.08708 -11.82069 -11.66454 -11.49712 -11.22536 -10.83401 -10.53328 -9.41259 -9.20626 -8.31975 -6.37025 1.34096 1.36199 1.47544 2.32897 2.60796 2.82014 3.01967 3.64466 3.78330 3.85465 3.90729 4.07572 4.17627 4.23180 4.29083 4.41610 4.45320 4.56922 4.64578 4.67902 4.74764 4.75016 4.79338 4.88829 4.97289 4.99658 5.04486 5.06911 5.13831 5.26704 5.39374 5.49689 5.83803 5.95411 5.97208 6.26591 6.51488 6.62628 6.73764 7.28158 8.84770 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.043862 B = 0.004200 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.206599 B = 6665.138740 C = 7099.818146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.084 3.916 3 H 0.070 0.930 4 C 0.024 3.976 5 N -0.536 5.536 6 C 0.070 3.930 7 C 0.067 3.933 8 N -0.691 5.691 9 C 0.177 3.823 10 C -0.531 4.531 11 H 0.038 0.962 12 C 0.008 3.992 13 N -0.947 5.947 14 Si 0.953 3.047 15 H -0.265 1.265 16 H -0.251 1.251 17 H -0.280 1.280 18 C 0.019 3.981 19 C 0.090 3.910 20 H 0.117 0.883 21 C -0.169 4.169 22 O -0.394 6.394 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.035 0.965 28 H 0.081 0.919 29 H 0.034 0.966 30 H 0.062 0.938 31 H 0.030 0.970 32 H 0.338 0.662 33 H 0.024 0.976 34 H -0.013 1.013 35 H 0.268 0.732 36 H 0.034 0.966 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.742 8.757 16.613 25.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.027 3.973 3 H 0.088 0.912 4 C -0.104 4.104 5 N -0.261 5.261 6 C -0.058 4.058 7 C -0.062 4.062 8 N -0.322 5.322 9 C 0.048 3.952 10 C -0.569 4.569 11 H 0.056 0.944 12 C -0.190 4.190 13 N -0.587 5.587 14 Si 0.776 3.224 15 H -0.190 1.190 16 H -0.175 1.175 17 H -0.205 1.205 18 C -0.109 4.109 19 C 0.032 3.968 20 H 0.134 0.866 21 C -0.226 4.226 22 O -0.314 6.314 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.108 0.892 26 H 0.114 0.886 27 H 0.054 0.946 28 H 0.100 0.900 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.048 0.952 32 H 0.155 0.845 33 H 0.042 0.958 34 H 0.005 0.995 35 H 0.077 0.923 36 H 0.052 0.948 37 H 0.105 0.895 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.510 8.493 16.961 25.147 hybrid contribution 0.844 0.065 -0.620 1.049 sum -15.666 8.557 16.341 24.200 Atomic orbital electron populations 1.21753 0.91355 1.03001 1.03657 1.22275 0.95788 0.95713 0.83554 0.91201 1.22884 0.86955 1.00192 1.00336 1.62148 1.09386 1.52681 1.01911 1.21900 0.94068 0.97132 0.92697 1.21851 0.94512 0.96503 0.93374 1.60338 1.05644 1.61339 1.04852 1.19731 0.85965 0.93702 0.95784 1.21343 0.93211 1.35624 1.06752 0.94405 1.25900 1.00313 0.95796 0.96988 1.70052 1.15364 1.45930 1.27363 0.85636 0.77852 0.78889 0.80052 1.18997 1.17469 1.20501 1.22878 1.01522 0.95667 0.90818 1.22346 0.80251 0.96946 0.97219 0.86569 1.22217 1.01609 0.96382 1.02438 1.88004 1.21403 1.78452 1.43494 0.92306 0.91224 0.89212 0.88551 0.94644 0.90045 0.94784 0.91958 0.95169 0.84460 0.95775 0.99549 0.92267 0.94795 0.89486 0.91696 0.91272 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.57 71.98 0.69 -1.24 16 2 C 0.08 1.55 3.02 30.63 0.09 1.64 16 3 H 0.07 1.28 6.50 -2.39 -0.02 1.26 16 4 C 0.02 0.49 4.93 86.31 0.43 0.91 16 5 N -0.54 -12.61 4.10 -895.21 -3.67 -16.27 16 6 C 0.07 1.89 5.22 86.30 0.45 2.34 16 7 C 0.07 2.19 5.62 86.30 0.49 2.67 16 8 N -0.69 -28.42 6.49 -517.94 -3.36 -31.78 16 9 C 0.18 8.57 4.51 85.56 0.39 8.96 16 10 C -0.53 -31.20 9.87 25.60 0.25 -30.95 16 11 H 0.04 2.46 8.06 -2.91 -0.02 2.43 16 12 C 0.01 0.45 5.47 84.65 0.46 0.91 16 13 N -0.95 -59.55 13.96 21.45 0.30 -59.25 16 14 Si 0.95 44.24 27.47 68.60 1.88 46.12 16 15 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 16 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 17 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 18 C 0.02 0.44 4.85 86.32 0.42 0.86 16 19 C 0.09 1.78 3.92 30.63 0.12 1.90 16 20 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 21 C -0.17 -3.06 8.89 71.98 0.64 -2.42 16 22 O -0.39 -8.61 10.28 -148.98 -1.53 -10.14 16 23 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.09 0.90 8.14 -2.39 -0.02 0.89 16 26 H 0.10 1.68 8.09 -2.39 -0.02 1.66 16 27 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.08 2.06 8.04 -2.39 -0.02 2.04 16 29 H 0.03 0.99 8.12 -2.39 -0.02 0.97 16 30 H 0.06 2.04 6.52 -2.39 -0.02 2.02 16 31 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.34 13.47 8.72 -89.69 -0.78 12.69 16 33 H 0.02 1.18 7.20 -2.39 -0.02 1.16 16 34 H -0.01 -0.62 7.57 -2.38 -0.02 -0.64 16 35 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 36 H 0.03 0.82 8.14 -2.39 -0.02 0.81 16 37 H 0.09 2.02 6.38 -2.38 -0.02 2.00 16 38 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.06 1.25 6.13 -2.39 -0.01 1.24 16 Total: -1.00 -66.21 311.82 -1.79 -68.01 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.16 Total: 17.73 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: 4.42 Total: -14.41 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -6.73 Total: -107.31 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -1.53 Total: -10.14 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.88 Total: 46.12 kcal Total: -66.21 -1.79 -68.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380271157.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.500 kcal (2) G-P(sol) polarization free energy of solvation -66.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds