Wall clock time and date at job start Mon Mar 30 2020 04:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.50871 * 2 1 4 4 C 1.53096 * 109.50623 * 239.91296 * 2 1 3 5 5 N 1.47010 * 109.26196 * 183.21789 * 4 2 1 6 6 C 1.46897 * 111.00458 * 182.39423 * 5 4 2 7 7 C 1.52993 * 109.47325 * 169.99840 * 6 5 4 8 8 N 1.46910 * 109.47162 * 179.97438 * 7 6 5 9 9 C 1.46895 * 110.99769 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.46770 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72214 * 10 9 8 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48501 * 109.47188 * 90.00793 * 14 12 10 16 16 H 1.48501 * 109.47085 * 210.00372 * 14 12 10 17 17 H 1.48498 * 109.47634 * 330.00608 * 14 12 10 18 18 C 1.47012 * 110.75159 * 58.61605 * 5 4 2 19 19 C 1.53098 * 109.25976 * 301.38392 * 18 5 4 20 20 H 1.08994 * 109.50867 * 296.91875 * 19 18 5 21 21 C 1.52995 * 109.51262 * 176.78343 * 19 18 5 22 22 O 1.43015 * 109.50591 * 120.13245 * 2 1 3 23 23 H 1.08998 * 109.47345 * 180.08632 * 1 2 3 24 24 H 1.09005 * 109.46566 * 300.08650 * 1 2 3 25 25 H 1.09001 * 109.47079 * 60.07890 * 1 2 3 26 26 H 1.09006 * 109.50387 * 63.28397 * 4 2 1 27 27 H 1.09002 * 109.50764 * 303.15743 * 4 2 1 28 28 H 1.08998 * 109.47228 * 49.99670 * 6 5 4 29 29 H 1.09005 * 109.46823 * 290.00198 * 6 5 4 30 30 H 1.09005 * 109.47376 * 60.00360 * 7 6 5 31 31 H 1.08991 * 109.47342 * 299.99897 * 7 6 5 32 32 H 1.00901 * 110.99285 * 56.05147 * 8 7 6 33 33 H 1.09004 * 109.47258 * 60.00516 * 9 8 7 34 34 H 1.08994 * 109.47601 * 300.00108 * 9 8 7 35 35 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 36 36 H 1.08996 * 109.50811 * 61.31829 * 18 5 4 37 37 H 1.09005 * 109.50913 * 181.45282 * 18 5 4 38 38 H 1.09007 * 109.46824 * 300.22052 * 21 19 18 39 39 H 1.09003 * 109.47098 * 60.21632 * 21 19 18 40 40 H 1.08997 * 109.47549 * 180.22340 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0412 -0.7234 -1.2487 5 7 3.5092 -0.7881 -1.2048 6 6 4.0446 -1.4260 -2.4149 7 6 5.5643 -1.2539 -2.4525 8 7 6.0997 -1.8924 -3.6624 9 6 7.5597 -1.7462 -3.7325 10 6 8.0715 -2.4115 -4.9842 11 1 7.3811 -2.8941 -5.6602 12 6 9.4204 -2.3985 -5.2696 13 7 10.2609 -1.8104 -4.4467 14 14 10.0538 -3.2164 -6.8250 15 1 10.0626 -2.2297 -7.9347 16 1 11.4335 -3.7152 -6.5952 17 1 9.1689 -4.3544 -7.1815 18 6 3.9639 -1.4885 0.0051 19 6 3.4335 -0.7574 1.2413 20 1 3.8534 0.2477 1.2777 21 6 3.8357 -1.5261 2.5014 22 8 2.0075 -0.6767 1.1659 23 1 -0.3634 -1.0276 0.0015 24 1 -0.3632 0.5152 0.8893 25 1 -0.3633 0.5126 -0.8907 26 1 1.7273 -0.1786 -2.1391 27 1 1.6330 -1.7338 -1.2767 28 1 3.6042 -0.9600 -3.2964 29 1 3.7993 -2.4880 -2.4046 30 1 6.0047 -1.7199 -1.5710 31 1 5.8096 -0.1920 -2.4628 32 1 5.6593 -1.5224 -4.4914 33 1 8.0142 -2.2151 -2.8597 34 1 7.8184 -0.6876 -3.7524 35 1 11.2100 -1.8016 -4.6473 36 1 3.5865 -2.5110 -0.0028 37 1 5.0535 -1.5022 0.0300 38 1 3.4168 -2.5317 2.4628 39 1 4.9226 -1.5873 2.5583 40 1 3.4545 -1.0072 3.3809 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380271158.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:07 Heat of formation + Delta-G solvation = -74.007226 kcal Electronic energy + Delta-G solvation = -17679.802877 eV Core-core repulsion = 14914.060946 eV Total energy + Delta-G solvation = -2765.741931 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.86804 -37.95053 -36.30202 -34.71212 -34.46472 -31.58124 -30.23533 -27.80175 -27.75687 -25.13145 -23.43944 -23.00998 -22.15764 -21.39752 -18.57850 -17.61229 -17.26754 -16.97846 -16.62842 -16.45564 -15.80017 -15.47744 -15.09735 -14.76044 -14.25767 -14.07936 -13.84419 -13.68252 -13.47917 -13.05098 -12.99609 -12.85909 -12.76682 -12.67981 -12.60556 -12.36580 -12.07949 -11.96054 -11.75193 -11.42483 -11.29817 -10.67794 -10.55224 -9.47169 -9.19217 -8.24075 -6.35880 1.41290 1.43243 1.55131 2.38623 2.58694 2.73067 3.09284 3.63165 3.77892 3.86046 3.89105 4.08845 4.14698 4.17093 4.27476 4.41243 4.44570 4.55403 4.63481 4.65439 4.67843 4.77111 4.87645 4.91396 4.97941 5.00497 5.07422 5.12178 5.21282 5.23304 5.29935 5.58666 5.85743 5.93104 5.99763 6.24882 6.38835 6.68232 6.86084 7.35234 8.87773 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.044929 B = 0.003791 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.062508 B = 7384.069223 C = 7829.362238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.086 3.914 3 H 0.064 0.936 4 C 0.025 3.975 5 N -0.546 5.546 6 C 0.074 3.926 7 C 0.069 3.931 8 N -0.688 5.688 9 C 0.209 3.791 10 C -0.538 4.538 11 H 0.066 0.934 12 C 0.000 4.000 13 N -0.934 5.934 14 Si 0.976 3.024 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.264 1.264 18 C 0.021 3.979 19 C 0.091 3.909 20 H 0.063 0.937 21 C -0.140 4.140 22 O -0.395 6.395 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.038 0.962 28 H 0.084 0.916 29 H 0.037 0.963 30 H 0.054 0.946 31 H 0.020 0.980 32 H 0.337 0.663 33 H -0.001 1.001 34 H -0.039 1.039 35 H 0.266 0.734 36 H 0.037 0.963 37 H 0.081 0.919 38 H 0.060 0.940 39 H 0.083 0.917 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.293 3.390 9.943 21.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.028 3.972 3 H 0.082 0.918 4 C -0.103 4.103 5 N -0.271 5.271 6 C -0.054 4.054 7 C -0.061 4.061 8 N -0.319 5.319 9 C 0.081 3.919 10 C -0.576 4.576 11 H 0.084 0.916 12 C -0.198 4.198 13 N -0.574 5.574 14 Si 0.800 3.200 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.188 1.188 18 C -0.107 4.107 19 C 0.033 3.967 20 H 0.081 0.919 21 C -0.198 4.198 22 O -0.315 6.315 23 H 0.079 0.921 24 H 0.088 0.912 25 H 0.110 0.890 26 H 0.117 0.883 27 H 0.057 0.943 28 H 0.103 0.897 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.038 0.962 32 H 0.154 0.846 33 H 0.017 0.983 34 H -0.021 1.021 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.101 0.899 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.032 3.199 10.417 21.069 hybrid contribution 0.837 -0.095 -1.065 1.358 sum -17.195 3.104 9.352 19.818 Atomic orbital electron populations 1.21740 0.90892 1.03125 1.03754 1.22292 0.96159 0.95213 0.83501 0.91759 1.22895 0.86649 1.00358 1.00413 1.62141 1.09775 1.53063 1.02157 1.21882 0.93670 0.97246 0.92597 1.21802 0.94664 0.95978 0.93677 1.60511 1.06225 1.60729 1.04481 1.19196 0.83719 0.92785 0.96163 1.21549 0.93052 1.35792 1.07229 0.91557 1.25999 0.97039 0.96011 1.00775 1.70099 1.03475 1.45093 1.38778 0.85280 0.77414 0.78805 0.78475 1.19560 1.20687 1.18802 1.22891 1.01261 0.95960 0.90580 1.22189 0.80823 0.99070 0.94586 0.91852 1.21746 1.02254 1.00301 0.95487 1.87952 1.21365 1.78676 1.43497 0.92129 0.91187 0.89028 0.88281 0.94335 0.89728 0.94429 0.92728 0.96209 0.84599 0.98308 1.02101 0.92544 0.94518 0.90023 0.92062 0.89861 0.90760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.57 71.98 0.69 -1.29 16 2 C 0.09 1.72 3.43 30.63 0.10 1.83 16 3 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 4 C 0.02 0.53 4.93 86.31 0.43 0.96 16 5 N -0.55 -14.48 4.73 -895.24 -4.23 -18.71 16 6 C 0.07 2.17 5.22 86.30 0.45 2.62 16 7 C 0.07 2.54 5.62 86.30 0.49 3.02 16 8 N -0.69 -30.35 6.49 -517.94 -3.36 -33.72 16 9 C 0.21 11.51 5.44 85.56 0.47 11.98 16 10 C -0.54 -31.12 9.32 25.60 0.24 -30.88 16 11 H 0.07 3.70 7.81 -2.91 -0.02 3.68 16 12 C 0.00 0.00 5.46 84.66 0.46 0.46 16 13 N -0.93 -57.03 13.29 21.45 0.28 -56.75 16 14 Si 0.98 44.42 29.54 68.60 2.03 46.44 16 15 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 16 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 17 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 18 C 0.02 0.55 4.72 86.31 0.41 0.96 16 19 C 0.09 2.07 3.43 30.63 0.10 2.17 16 20 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 21 C -0.14 -2.57 9.57 71.98 0.69 -1.88 16 22 O -0.39 -9.39 10.11 -148.98 -1.51 -10.89 16 23 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 25 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.10 1.83 8.09 -2.38 -0.02 1.81 16 27 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 2.27 8.04 -2.39 -0.02 2.25 16 29 H 0.04 1.15 8.12 -2.38 -0.02 1.13 16 30 H 0.05 2.09 6.52 -2.38 -0.02 2.08 16 31 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.34 13.84 8.72 -89.69 -0.78 13.06 16 33 H 0.00 -0.07 8.14 -2.38 -0.02 -0.09 16 34 H -0.04 -2.28 8.14 -2.39 -0.02 -2.30 16 35 H 0.27 15.15 8.31 -92.70 -0.77 14.38 16 36 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 2.24 6.38 -2.38 -0.02 2.22 16 38 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 39 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -65.41 320.00 -2.06 -67.48 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.20 Total: 16.21 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: 4.52 Total: -10.06 kcal Atomic # 7 Polarization: -101.87 SS G_CDS: -7.31 Total: -109.18 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -1.51 Total: -10.89 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -65.41 -2.06 -67.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380271158.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.532 kcal (2) G-P(sol) polarization free energy of solvation -65.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds