Wall clock time and date at job start Mon Mar 30 2020 04:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.50337 * 2 1 4 4 C 1.53107 * 109.50274 * 120.07976 * 2 1 3 5 5 N 1.47012 * 109.25396 * 63.09188 * 4 2 1 6 6 C 1.46901 * 110.99642 * 182.39113 * 5 4 2 7 7 C 1.53003 * 109.47209 * 169.99850 * 6 5 4 8 8 N 1.46901 * 109.47213 * 179.97438 * 7 6 5 9 9 C 1.46895 * 110.99820 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.47182 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99758 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00102 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47057 * 179.97438 * 14 12 10 16 16 H 1.48500 * 109.47389 * 300.00068 * 14 12 10 17 17 H 1.48504 * 109.47102 * 60.00417 * 14 12 10 18 18 C 1.47014 * 110.75775 * 58.61356 * 5 4 2 19 19 C 1.53102 * 109.25537 * 301.38081 * 18 5 4 20 20 H 1.08999 * 109.54125 * 296.89257 * 19 18 5 21 21 C 1.52995 * 109.50263 * 176.78271 * 19 18 5 22 22 O 1.43012 * 109.50929 * 239.86217 * 2 1 3 23 23 H 1.09000 * 109.47677 * 299.91673 * 1 2 3 24 24 H 1.09001 * 109.46785 * 59.92014 * 1 2 3 25 25 H 1.09004 * 109.47062 * 179.91468 * 1 2 3 26 26 H 1.08991 * 109.50660 * 303.15293 * 4 2 1 27 27 H 1.08998 * 109.50458 * 183.01940 * 4 2 1 28 28 H 1.08998 * 109.47247 * 49.99493 * 6 5 4 29 29 H 1.09009 * 109.47056 * 289.99620 * 6 5 4 30 30 H 1.09006 * 109.47162 * 59.99960 * 7 6 5 31 31 H 1.09001 * 109.47081 * 300.00129 * 7 6 5 32 32 H 1.00902 * 111.00171 * 303.95481 * 8 7 6 33 33 H 1.09001 * 109.47613 * 60.00522 * 9 8 7 34 34 H 1.09006 * 109.47521 * 300.00140 * 9 8 7 35 35 H 0.97001 * 119.99646 * 359.97438 * 13 12 10 36 36 H 1.09003 * 109.50675 * 61.31865 * 18 5 4 37 37 H 1.09001 * 109.50739 * 181.44842 * 18 5 4 38 38 H 1.09004 * 109.47382 * 300.21483 * 21 19 18 39 39 H 1.09001 * 109.47483 * 60.21973 * 21 19 18 40 40 H 1.09007 * 109.47119 * 180.22096 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0411 -0.7234 1.2489 5 7 1.6109 -2.1284 1.2054 6 6 2.0334 -2.8459 2.4157 7 6 1.3629 -4.2206 2.4539 8 7 1.7858 -4.9384 3.6638 9 6 1.1598 -6.2654 3.7346 10 6 1.6159 -6.9699 4.9864 11 1 2.3019 -6.4805 5.6620 12 6 1.1574 -8.2390 5.2691 13 7 0.3225 -8.8351 4.4462 14 14 1.7233 -9.1124 6.8203 15 1 1.0904 -10.4539 6.8920 16 1 3.2005 -9.2623 6.7932 17 1 1.3284 -8.3152 8.0093 18 6 2.1185 -2.7916 -0.0045 19 6 1.6065 -2.0475 -1.2406 20 1 0.5188 -2.1070 -1.2775 21 6 2.1961 -2.6843 -2.5007 22 8 2.0076 -0.6768 -1.1658 23 1 -0.3634 0.5125 0.8907 24 1 -0.3633 0.5151 -0.8893 25 1 -0.3633 -1.0277 -0.0015 26 1 1.6331 -0.2450 2.1391 27 1 3.1298 -0.6768 1.2764 28 1 1.7419 -2.2748 3.2971 29 1 3.1164 -2.9701 2.4050 30 1 1.6545 -4.7918 1.5724 31 1 0.2800 -4.0965 2.4645 32 1 2.7913 -5.0097 3.7091 33 1 1.4493 -6.8508 2.8619 34 1 0.0755 -6.1550 3.7547 35 1 0.0289 -8.3817 3.6405 36 1 3.2085 -2.7781 0.0031 37 1 1.7669 -3.8231 -0.0289 38 1 3.2839 -2.6258 -2.4625 39 1 1.8901 -3.7289 -2.5572 40 1 1.8343 -2.1516 -3.3803 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380271159.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:10 Heat of formation + Delta-G solvation = -51.966864 kcal Electronic energy + Delta-G solvation = -17890.123139 eV Core-core repulsion = 15125.336950 eV Total energy + Delta-G solvation = -2764.786189 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.12832 -36.70358 -34.89206 -33.54842 -32.60732 -30.54984 -28.54301 -27.04487 -25.69475 -23.86869 -22.68507 -21.76588 -21.00564 -19.58310 -16.92459 -16.69380 -16.42498 -15.76109 -15.06064 -14.69404 -14.56567 -14.40655 -13.73143 -13.40696 -13.28315 -12.96543 -12.60402 -12.58062 -12.12501 -12.08222 -11.84958 -11.60921 -11.48305 -11.26374 -11.06686 -10.83934 -10.60438 -10.56960 -10.34501 -10.07299 -9.66378 -8.65399 -8.42432 -8.41229 -7.44929 -6.39115 -4.08185 3.43970 3.46794 3.53327 3.65263 3.71722 4.52679 4.61458 4.70345 4.81414 4.89997 5.02269 5.16182 5.20804 5.27756 5.31437 5.37909 5.41532 5.44849 5.52228 5.61081 5.64778 5.75127 5.77811 5.85233 5.91704 5.96496 6.17878 6.23289 6.30455 6.91187 6.92029 6.96948 7.08404 7.13457 7.74634 8.12169 8.42525 8.55396 8.85313 9.63776 11.00742 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.044022 B = 0.003924 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.888322 B = 7133.058975 C = 7418.365380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.091 3.909 3 H 0.103 0.897 4 C 0.024 3.976 5 N -0.533 5.533 6 C 0.060 3.940 7 C 0.063 3.937 8 N -0.684 5.684 9 C 0.186 3.814 10 C -0.597 4.597 11 H 0.056 0.944 12 C 0.014 3.986 13 N -0.913 5.913 14 Si 1.074 2.926 15 H -0.283 1.283 16 H -0.288 1.288 17 H -0.287 1.287 18 C 0.020 3.980 19 C 0.086 3.914 20 H 0.070 0.930 21 C -0.145 4.145 22 O -0.380 6.380 23 H 0.064 0.936 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.040 0.960 28 H 0.083 0.917 29 H 0.030 0.970 30 H 0.016 0.984 31 H 0.071 0.929 32 H 0.329 0.671 33 H -0.025 1.025 34 H 0.019 0.981 35 H 0.267 0.733 36 H 0.040 0.960 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.075 16.509 -11.328 20.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.033 3.967 3 H 0.120 0.880 4 C -0.104 4.104 5 N -0.258 5.258 6 C -0.067 4.067 7 C -0.067 4.067 8 N -0.314 5.314 9 C 0.059 3.941 10 C -0.635 4.635 11 H 0.074 0.926 12 C -0.189 4.189 13 N -0.549 5.549 14 Si 0.902 3.098 15 H -0.208 1.208 16 H -0.215 1.215 17 H -0.213 1.213 18 C -0.108 4.108 19 C 0.029 3.971 20 H 0.088 0.912 21 C -0.202 4.202 22 O -0.300 6.300 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.092 0.908 26 H 0.104 0.896 27 H 0.058 0.942 28 H 0.102 0.898 29 H 0.049 0.951 30 H 0.034 0.966 31 H 0.090 0.910 32 H 0.145 0.855 33 H -0.007 1.007 34 H 0.037 0.963 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.107 0.893 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.034 15.466 -10.214 18.646 hybrid contribution 1.381 0.869 -1.275 2.071 sum 3.415 16.336 -11.489 20.261 Atomic orbital electron populations 1.22283 0.95504 1.03642 1.01872 1.22240 0.94459 0.95674 0.84346 0.87965 1.22774 0.98516 0.89786 0.99361 1.62127 1.59643 1.01633 1.02401 1.22118 0.97148 0.95699 0.91762 1.21868 1.00507 0.92361 0.91962 1.60495 1.12525 1.22236 1.36157 1.19645 0.94767 0.83614 0.96122 1.22006 1.31199 1.02532 1.07794 0.92581 1.25885 0.94731 0.95017 1.03293 1.70796 1.31060 1.40380 1.12693 0.83468 0.75772 0.76052 0.74491 1.20786 1.21473 1.21330 1.22893 0.98124 0.99497 0.90281 1.22164 0.99098 0.81560 0.94306 0.91213 1.21753 1.01738 1.00449 0.96289 1.88007 1.75677 1.23333 1.42960 0.91673 0.92549 0.90838 0.89559 0.94196 0.89849 0.95142 0.96572 0.91024 0.85466 1.00706 0.96291 0.92305 0.94165 0.89302 0.91980 0.90833 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.72 8.89 37.16 0.33 -1.39 16 2 C 0.09 0.94 3.92 -26.68 -0.10 0.84 16 3 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 4 C 0.02 0.27 5.06 -3.71 -0.02 0.25 16 5 N -0.53 -7.00 4.10 -234.30 -0.96 -7.96 16 6 C 0.06 0.90 5.22 -3.82 -0.02 0.88 16 7 C 0.06 1.14 5.62 -3.82 -0.02 1.12 16 8 N -0.68 -15.02 6.49 -115.05 -0.75 -15.77 16 9 C 0.19 4.94 4.75 -4.98 -0.02 4.92 16 10 C -0.60 -17.37 9.32 -34.44 -0.32 -17.69 16 11 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 12 C 0.01 0.42 5.46 -17.82 -0.10 0.33 16 13 N -0.91 -28.25 13.65 55.43 0.76 -27.49 16 14 Si 1.07 25.52 29.90 -169.99 -5.08 20.44 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 18 C 0.02 0.26 4.72 -3.71 -0.02 0.24 16 19 C 0.09 0.98 3.03 -26.68 -0.08 0.90 16 20 H 0.07 0.80 6.49 -51.93 -0.34 0.46 16 21 C -0.14 -1.36 9.57 37.16 0.36 -1.00 16 22 O -0.38 -4.62 10.28 -35.23 -0.36 -4.98 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.83 6.12 -51.93 -0.32 0.51 16 26 H 0.09 0.88 8.09 -51.93 -0.42 0.46 16 27 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 1.25 8.04 -51.93 -0.42 0.83 16 29 H 0.03 0.45 8.12 -51.92 -0.42 0.03 16 30 H 0.02 0.29 6.52 -51.93 -0.34 -0.04 16 31 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 32 H 0.33 6.93 8.72 -39.29 -0.34 6.59 16 33 H -0.02 -0.68 8.01 -51.93 -0.42 -1.10 16 34 H 0.02 0.54 8.01 -51.93 -0.42 0.12 16 35 H 0.27 8.24 7.22 -40.82 -0.29 7.95 16 36 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 1.16 6.38 -51.93 -0.33 0.83 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 LS Contribution 314.10 15.07 4.73 4.73 Total: -1.00 -31.29 314.10 -8.74 -40.04 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -7.06 Total: 1.60 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -0.02 Total: -10.61 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: -0.95 Total: -51.23 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -0.36 Total: -4.98 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -5.08 Total: 20.44 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.29 -8.74 -40.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380271159.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.931 kcal (2) G-P(sol) polarization free energy of solvation -31.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds