Wall clock time and date at job start Mon Mar 30 2020 04:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.50337 * 2 1 4 4 C 1.53107 * 109.50274 * 120.07976 * 2 1 3 5 5 N 1.47012 * 109.25396 * 63.09188 * 4 2 1 6 6 C 1.46901 * 110.99642 * 182.39113 * 5 4 2 7 7 C 1.53003 * 109.47209 * 169.99850 * 6 5 4 8 8 N 1.46901 * 109.47213 * 179.97438 * 7 6 5 9 9 C 1.46895 * 110.99820 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.47182 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99758 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00102 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47057 * 179.97438 * 14 12 10 16 16 H 1.48500 * 109.47389 * 300.00068 * 14 12 10 17 17 H 1.48504 * 109.47102 * 60.00417 * 14 12 10 18 18 C 1.47014 * 110.75775 * 58.61356 * 5 4 2 19 19 C 1.53102 * 109.25537 * 301.38081 * 18 5 4 20 20 H 1.08999 * 109.54125 * 296.89257 * 19 18 5 21 21 C 1.52995 * 109.50263 * 176.78271 * 19 18 5 22 22 O 1.43012 * 109.50929 * 239.86217 * 2 1 3 23 23 H 1.09000 * 109.47677 * 299.91673 * 1 2 3 24 24 H 1.09001 * 109.46785 * 59.92014 * 1 2 3 25 25 H 1.09004 * 109.47062 * 179.91468 * 1 2 3 26 26 H 1.08991 * 109.50660 * 303.15293 * 4 2 1 27 27 H 1.08998 * 109.50458 * 183.01940 * 4 2 1 28 28 H 1.08998 * 109.47247 * 49.99493 * 6 5 4 29 29 H 1.09009 * 109.47056 * 289.99620 * 6 5 4 30 30 H 1.09006 * 109.47162 * 59.99960 * 7 6 5 31 31 H 1.09001 * 109.47081 * 300.00129 * 7 6 5 32 32 H 1.00902 * 111.00171 * 303.95481 * 8 7 6 33 33 H 1.09001 * 109.47613 * 60.00522 * 9 8 7 34 34 H 1.09006 * 109.47521 * 300.00140 * 9 8 7 35 35 H 0.97001 * 119.99646 * 359.97438 * 13 12 10 36 36 H 1.09003 * 109.50675 * 61.31865 * 18 5 4 37 37 H 1.09001 * 109.50739 * 181.44842 * 18 5 4 38 38 H 1.09004 * 109.47382 * 300.21483 * 21 19 18 39 39 H 1.09001 * 109.47483 * 60.21973 * 21 19 18 40 40 H 1.09007 * 109.47119 * 180.22096 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0411 -0.7234 1.2489 5 7 1.6109 -2.1284 1.2054 6 6 2.0334 -2.8459 2.4157 7 6 1.3629 -4.2206 2.4539 8 7 1.7858 -4.9384 3.6638 9 6 1.1598 -6.2654 3.7346 10 6 1.6159 -6.9699 4.9864 11 1 2.3019 -6.4805 5.6620 12 6 1.1574 -8.2390 5.2691 13 7 0.3225 -8.8351 4.4462 14 14 1.7233 -9.1124 6.8203 15 1 1.0904 -10.4539 6.8920 16 1 3.2005 -9.2623 6.7932 17 1 1.3284 -8.3152 8.0093 18 6 2.1185 -2.7916 -0.0045 19 6 1.6065 -2.0475 -1.2406 20 1 0.5188 -2.1070 -1.2775 21 6 2.1961 -2.6843 -2.5007 22 8 2.0076 -0.6768 -1.1658 23 1 -0.3634 0.5125 0.8907 24 1 -0.3633 0.5151 -0.8893 25 1 -0.3633 -1.0277 -0.0015 26 1 1.6331 -0.2450 2.1391 27 1 3.1298 -0.6768 1.2764 28 1 1.7419 -2.2748 3.2971 29 1 3.1164 -2.9701 2.4050 30 1 1.6545 -4.7918 1.5724 31 1 0.2800 -4.0965 2.4645 32 1 2.7913 -5.0097 3.7091 33 1 1.4493 -6.8508 2.8619 34 1 0.0755 -6.1550 3.7547 35 1 0.0289 -8.3817 3.6405 36 1 3.2085 -2.7781 0.0031 37 1 1.7669 -3.8231 -0.0289 38 1 3.2839 -2.6258 -2.4625 39 1 1.8901 -3.7289 -2.5572 40 1 1.8343 -2.1516 -3.3803 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380271159.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:10 Heat of formation + Delta-G solvation = -74.818337 kcal Electronic energy + Delta-G solvation = -17891.114054 eV Core-core repulsion = 15125.336950 eV Total energy + Delta-G solvation = -2765.777103 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.06849 -38.09051 -36.49236 -34.66655 -34.35234 -31.60604 -29.98223 -27.92913 -27.43216 -25.28136 -23.95827 -23.41769 -22.35778 -20.48297 -19.06452 -17.64310 -17.41767 -17.02509 -16.25036 -16.01441 -15.82152 -15.63651 -15.57366 -14.85463 -14.75968 -14.15260 -13.91606 -13.43542 -13.37845 -13.27221 -13.06201 -12.88592 -12.75724 -12.64775 -12.48346 -12.27504 -12.09155 -11.92654 -11.90887 -11.28043 -10.82929 -10.63743 -10.57608 -9.48400 -9.30193 -8.73889 -6.45239 1.53923 1.62723 1.82555 2.51228 2.59257 2.77284 3.11252 3.50826 3.73796 3.83174 3.91635 3.97875 4.05434 4.14890 4.25302 4.34936 4.40401 4.45035 4.57539 4.61407 4.68645 4.70132 4.73019 4.84460 4.89158 4.94996 4.98738 4.99505 5.09613 5.19892 5.38252 5.65871 5.84788 5.90623 5.97696 6.21588 6.32926 6.49323 6.60788 7.37407 8.65998 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.044022 B = 0.003924 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.888322 B = 7133.058975 C = 7418.365380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.088 3.912 3 H 0.125 0.875 4 C 0.024 3.976 5 N -0.539 5.539 6 C 0.075 3.925 7 C 0.069 3.931 8 N -0.682 5.682 9 C 0.196 3.804 10 C -0.614 4.614 11 H 0.058 0.942 12 C -0.037 4.037 13 N -0.935 5.935 14 Si 1.125 2.875 15 H -0.283 1.283 16 H -0.267 1.267 17 H -0.269 1.269 18 C 0.021 3.979 19 C 0.088 3.912 20 H 0.067 0.933 21 C -0.142 4.142 22 O -0.392 6.392 23 H 0.075 0.925 24 H 0.063 0.937 25 H 0.054 0.946 26 H 0.098 0.902 27 H 0.039 0.961 28 H 0.085 0.915 29 H 0.034 0.966 30 H 0.016 0.984 31 H 0.059 0.941 32 H 0.336 0.664 33 H -0.044 1.044 34 H -0.004 1.004 35 H 0.253 0.747 36 H 0.036 0.964 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.081 0.919 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.912 17.638 -10.932 21.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.030 3.970 3 H 0.143 0.857 4 C -0.104 4.104 5 N -0.264 5.264 6 C -0.053 4.053 7 C -0.061 4.061 8 N -0.313 5.313 9 C 0.068 3.932 10 C -0.652 4.652 11 H 0.076 0.924 12 C -0.234 4.234 13 N -0.572 5.572 14 Si 0.945 3.055 15 H -0.208 1.208 16 H -0.192 1.192 17 H -0.194 1.194 18 C -0.107 4.107 19 C 0.030 3.970 20 H 0.085 0.915 21 C -0.199 4.199 22 O -0.312 6.312 23 H 0.094 0.906 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.117 0.883 27 H 0.057 0.943 28 H 0.104 0.896 29 H 0.053 0.947 30 H 0.034 0.966 31 H 0.078 0.922 32 H 0.153 0.847 33 H -0.026 1.026 34 H 0.014 0.986 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.881 16.641 -9.843 19.547 hybrid contribution 1.099 0.592 -1.457 1.919 sum 3.980 17.233 -11.300 20.988 Atomic orbital electron populations 1.22233 0.95109 1.02667 1.02781 1.22432 0.94797 0.96416 0.83324 0.85737 1.22869 0.98579 0.88444 1.00530 1.62099 1.59907 1.02622 1.01776 1.21871 0.96842 0.93743 0.92860 1.21845 1.00060 0.93904 0.90286 1.60364 1.12800 1.19710 1.38445 1.19352 0.93562 0.85551 0.94741 1.22379 1.31208 1.03108 1.08526 0.92381 1.27534 0.93911 0.96185 1.05773 1.70932 1.32612 1.40725 1.12973 0.82838 0.76560 0.74996 0.71073 1.20812 1.19177 1.19446 1.22896 0.97828 0.99226 0.90764 1.22184 0.99007 0.81406 0.94359 0.91480 1.21756 1.01580 1.00907 0.95688 1.88000 1.75949 1.23508 1.43697 0.90619 0.91812 0.92684 0.88346 0.94277 0.89616 0.94735 0.96572 0.92242 0.84667 1.02608 0.98631 0.93786 0.94544 0.90319 0.92073 0.90047 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 8.89 71.98 0.64 -2.40 16 2 C 0.09 1.64 3.92 30.63 0.12 1.76 16 3 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 4 C 0.02 0.49 5.06 86.32 0.44 0.92 16 5 N -0.54 -13.62 4.10 -895.18 -3.67 -17.28 16 6 C 0.07 2.15 5.22 86.30 0.45 2.60 16 7 C 0.07 2.50 5.62 86.30 0.49 2.98 16 8 N -0.68 -30.06 6.49 -517.91 -3.36 -33.42 16 9 C 0.20 10.68 4.75 85.56 0.41 11.09 16 10 C -0.61 -35.85 9.32 25.60 0.24 -35.62 16 11 H 0.06 3.30 7.81 -2.91 -0.02 3.28 16 12 C -0.04 -2.14 5.46 84.65 0.46 -1.68 16 13 N -0.94 -58.62 13.65 21.45 0.29 -58.33 16 14 Si 1.13 50.39 29.90 68.60 2.05 52.45 16 15 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 16 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 17 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 18 C 0.02 0.52 4.72 86.32 0.41 0.93 16 19 C 0.09 1.91 3.03 30.63 0.09 2.00 16 20 H 0.07 1.49 6.49 -2.39 -0.02 1.47 16 21 C -0.14 -2.50 9.57 71.98 0.69 -1.81 16 22 O -0.39 -8.86 10.28 -148.98 -1.53 -10.40 16 23 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 25 H 0.05 1.19 6.12 -2.38 -0.01 1.18 16 26 H 0.10 1.79 8.09 -2.39 -0.02 1.77 16 27 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.09 2.44 8.04 -2.39 -0.02 2.42 16 29 H 0.03 0.97 8.12 -2.38 -0.02 0.95 16 30 H 0.02 0.59 6.52 -2.38 -0.02 0.58 16 31 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.34 14.02 8.72 -89.69 -0.78 13.24 16 33 H -0.04 -2.50 8.01 -2.39 -0.02 -2.52 16 34 H 0.00 -0.25 8.01 -2.38 -0.02 -0.27 16 35 H 0.25 16.12 7.22 -92.71 -0.67 15.45 16 36 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 2.06 6.38 -2.39 -0.02 2.05 16 38 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 Total: -1.00 -66.44 314.10 -1.47 -67.91 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.31 Total: 18.29 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: 4.43 Total: -19.22 kcal Atomic # 7 Polarization: -102.30 SS G_CDS: -6.73 Total: -109.03 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -1.53 Total: -10.40 kcal Atomic # 14 Polarization: 50.39 SS G_CDS: 2.05 Total: 52.45 kcal Total: -66.44 -1.47 -67.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380271159.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.908 kcal (2) G-P(sol) polarization free energy of solvation -66.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds