Wall clock time and date at job start Mon Mar 30 2020 04:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 108.93919 * 2 1 4 4 C 1.53694 * 108.95382 * 241.24745 * 2 1 3 5 5 N 1.48067 * 112.46757 * 197.96570 * 4 2 1 6 6 C 1.44577 * 113.85289 * 318.31540 * 5 4 2 7 7 C 1.54203 * 108.84630 * 94.23755 * 6 5 4 8 8 N 1.40019 * 112.08095 * 281.17585 * 7 6 5 9 9 C 1.46894 * 111.00109 * 188.09320 * 8 7 6 10 10 C 1.53009 * 109.46764 * 66.05231 * 9 8 7 11 11 O 1.42899 * 109.47113 * 64.99856 * 10 9 8 12 12 C 1.42903 * 113.99629 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.46878 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00559 * 17 15 13 19 19 H 1.48503 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47431 * 300.00157 * 17 15 13 21 21 C 1.47912 * 114.06309 * 61.81001 * 8 7 6 22 22 H 1.08998 * 109.47067 * 178.75788 * 1 2 3 23 23 H 1.09002 * 109.46989 * 298.74690 * 1 2 3 24 24 H 1.08998 * 109.47151 * 58.75263 * 1 2 3 25 25 H 1.09000 * 108.88448 * 77.19400 * 4 2 1 26 26 H 1.09004 * 108.88444 * 318.73560 * 4 2 1 27 27 H 1.00897 * 111.00095 * 84.44251 * 5 4 2 28 28 H 1.08993 * 109.57419 * 334.42006 * 6 5 4 29 29 H 1.09003 * 109.57201 * 214.04053 * 6 5 4 30 30 H 1.08997 * 108.95894 * 160.51512 * 7 6 5 31 31 H 1.08996 * 108.89429 * 41.80071 * 7 6 5 32 32 H 1.09000 * 109.47283 * 306.05179 * 9 8 7 33 33 H 1.09002 * 109.47562 * 186.04499 * 9 8 7 34 34 H 1.09007 * 109.46516 * 304.99789 * 10 9 8 35 35 H 1.09004 * 109.47113 * 185.00258 * 10 9 8 36 36 H 1.09002 * 109.47382 * 59.99956 * 12 11 10 37 37 H 1.09001 * 109.46938 * 299.99942 * 12 11 10 38 38 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 39 39 H 1.09005 * 109.63355 * 39.77715 * 21 8 7 40 40 H 1.08995 * 109.63250 * 160.37170 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8838 1.0309 0.0000 4 6 2.0292 -0.6992 -1.2744 5 7 3.4440 -1.1233 -1.1699 6 6 4.3023 -0.1458 -0.5389 7 6 4.4076 -0.4720 0.9645 8 7 3.2808 -0.0427 1.6764 9 6 3.4851 -0.1894 3.1236 10 6 4.5903 0.7644 3.5819 11 8 4.1616 2.1147 3.3955 12 6 5.1261 3.0909 3.7941 13 6 4.5719 4.4717 3.5543 14 1 3.5820 4.5917 3.1395 15 6 5.3283 5.5817 3.8656 16 7 6.5334 5.4355 4.3712 17 14 4.6410 7.2932 3.5690 18 1 3.3983 7.4719 4.3622 19 1 5.6433 8.3077 3.9831 20 1 4.3352 7.4606 2.1255 21 6 2.0181 -0.6853 1.2515 22 1 -0.3633 -1.0274 -0.0223 23 1 -0.3633 0.4943 0.9010 24 1 -0.3633 0.5331 -0.8786 25 1 1.9276 -0.0138 -2.1158 26 1 1.4106 -1.5772 -1.4605 27 1 3.5200 -2.0198 -0.7133 28 1 3.8782 0.8499 -0.6679 29 1 5.2934 -0.1841 -0.9911 30 1 5.2917 0.0180 1.3721 31 1 4.5131 -1.5501 1.0852 32 1 3.7752 -1.2160 3.3474 33 1 2.5593 0.0489 3.6473 34 1 5.4913 0.5849 2.9953 35 1 4.8036 0.5932 4.6371 36 1 6.0381 2.9597 3.2116 37 1 5.3509 2.9681 4.8536 38 1 7.0657 6.2165 4.5898 39 1 2.1956 -1.7409 1.0455 40 1 1.2721 -0.5834 2.0396 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385166925.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:25 Heat of formation + Delta-G solvation = -42.339333 kcal Electronic energy + Delta-G solvation = -18253.048547 eV Core-core repulsion = 15488.679839 eV Total energy + Delta-G solvation = -2764.368708 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.75469 -36.84463 -35.09632 -33.81680 -32.64569 -29.64243 -28.10474 -26.83326 -25.53844 -24.44293 -22.32280 -22.15555 -20.50474 -19.59096 -16.40132 -16.29958 -16.03246 -15.66271 -15.44035 -15.21349 -14.32602 -14.19525 -13.57448 -13.46378 -13.24423 -13.00560 -12.50406 -12.26678 -12.02590 -11.84385 -11.73264 -11.24490 -11.23435 -11.07073 -10.85506 -10.80527 -10.59149 -10.41976 -10.28110 -9.93633 -9.06054 -8.75720 -8.34763 -8.10846 -7.99056 -6.06860 -4.07855 3.34937 3.37254 3.41521 3.96218 4.26961 4.38336 4.74908 4.82559 4.92728 5.03542 5.12578 5.27797 5.29577 5.36471 5.45122 5.51314 5.55634 5.61886 5.69695 5.77253 5.82567 5.93127 6.03553 6.08479 6.11074 6.15951 6.23368 6.28920 6.38533 7.05979 7.14359 7.27406 7.36329 7.47774 7.58512 7.84508 8.21107 8.66018 9.06441 9.56829 11.04808 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.026188 B = 0.005249 C = 0.004956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.921976 B = 5332.712229 C = 5648.287458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.127 4.127 3 H 0.090 0.910 4 C 0.068 3.932 5 N -0.698 5.698 6 C 0.065 3.935 7 C 0.037 3.963 8 N -0.538 5.538 9 C 0.067 3.933 10 C 0.065 3.935 11 O -0.379 6.379 12 C 0.195 3.805 13 C -0.511 4.511 14 H 0.065 0.935 15 C 0.056 3.944 16 N -0.900 5.900 17 Si 0.907 3.093 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.275 1.275 21 C 0.071 3.929 22 H 0.049 0.951 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.336 0.664 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.013 0.987 32 H 0.036 0.964 33 H 0.080 0.920 34 H 0.037 0.963 35 H 0.038 0.962 36 H 0.003 0.997 37 H 0.001 0.999 38 H 0.264 0.736 39 H 0.029 0.971 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.832 -14.615 -7.601 18.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.148 4.148 3 H 0.108 0.892 4 C -0.062 4.062 5 N -0.327 5.327 6 C -0.065 4.065 7 C -0.094 4.094 8 N -0.262 5.262 9 C -0.060 4.060 10 C -0.014 4.014 11 O -0.299 6.299 12 C 0.120 3.880 13 C -0.549 4.549 14 H 0.084 0.916 15 C -0.145 4.145 16 N -0.540 5.540 17 Si 0.734 3.266 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.056 4.056 22 H 0.068 0.932 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.154 0.846 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.030 0.970 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.020 0.980 37 H 0.019 0.981 38 H 0.073 0.927 39 H 0.047 0.953 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.732 -13.758 -8.341 17.850 hybrid contribution -0.036 -0.057 1.211 1.213 sum -7.769 -13.815 -7.129 17.379 Atomic orbital electron populations 1.21814 0.94841 1.01228 1.02097 1.21651 0.95886 1.02540 0.94715 0.89215 1.22422 0.87781 0.99434 0.96535 1.59655 1.08110 1.06025 1.58941 1.21917 0.97436 0.96715 0.90407 1.21757 0.94684 0.96635 0.96330 1.58935 1.02417 1.60617 1.04190 1.22122 1.00381 0.96142 0.87367 1.22305 0.95343 0.85935 0.97775 1.87946 1.43598 1.12223 1.86096 1.20166 0.87642 0.86456 0.93706 1.21018 1.02448 0.89388 1.42052 0.91628 1.24940 0.94832 0.99564 0.95172 1.69956 1.09904 1.30466 1.43662 0.86411 0.78568 0.82758 0.78817 1.20059 1.21198 1.20024 1.21901 0.91582 0.94837 0.97304 0.93156 0.92343 0.92600 0.91250 0.91857 0.84604 0.89924 0.90475 0.89900 0.96971 0.94558 0.90179 0.94549 0.94351 0.97968 0.98074 0.92685 0.95308 0.90626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.85 37.16 0.33 -1.06 16 2 C -0.13 -1.49 2.25 -91.36 -0.21 -1.70 16 3 H 0.09 1.32 7.23 -51.93 -0.38 0.95 16 4 C 0.07 0.72 5.87 -2.82 -0.02 0.70 16 5 N -0.70 -8.00 6.53 -113.49 -0.74 -8.74 16 6 C 0.07 0.85 6.31 -4.44 -0.03 0.82 16 7 C 0.04 0.51 4.82 -6.75 -0.03 0.48 16 8 N -0.54 -8.05 4.03 -239.75 -0.97 -9.02 16 9 C 0.07 1.02 5.34 -3.82 -0.02 1.00 16 10 C 0.06 1.22 5.97 37.16 0.22 1.44 16 11 O -0.38 -9.33 10.27 -35.23 -0.36 -9.70 16 12 C 0.19 5.45 5.69 36.01 0.20 5.65 16 13 C -0.51 -15.33 9.43 -34.44 -0.32 -15.65 16 14 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -27.31 13.29 55.43 0.74 -26.58 16 17 Si 0.91 22.19 29.54 -169.99 -5.02 17.17 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 C 0.07 0.87 4.84 -4.37 -0.02 0.85 16 22 H 0.05 0.42 8.11 -51.93 -0.42 0.00 16 23 H 0.06 0.60 8.02 -51.93 -0.42 0.19 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.58 7.95 -51.93 -0.41 0.17 16 27 H 0.34 3.52 7.50 -39.29 -0.29 3.23 16 28 H 0.08 1.24 6.93 -51.93 -0.36 0.88 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.08 1.28 5.84 -51.93 -0.30 0.97 16 31 H 0.01 0.16 7.56 -51.93 -0.39 -0.24 16 32 H 0.04 0.47 8.11 -51.93 -0.42 0.05 16 33 H 0.08 1.22 7.70 -51.93 -0.40 0.82 16 34 H 0.04 0.67 6.16 -51.93 -0.32 0.35 16 35 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 37 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.03 0.32 7.13 -51.93 -0.37 -0.05 16 40 H 0.08 0.92 7.11 -51.93 -0.37 0.55 16 LS Contribution 310.15 15.07 4.67 4.67 Total: -1.00 -31.25 310.15 -8.61 -39.86 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -6.94 Total: -1.75 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 0.01 Total: -5.92 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: -0.97 Total: -44.33 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: -0.36 Total: -9.70 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.25 -8.61 -39.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385166925.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.481 kcal (2) G-P(sol) polarization free energy of solvation -31.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds