Wall clock time and date at job start Mon Mar 30 2020 04:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 108.93919 * 2 1 4 4 C 1.53694 * 108.95382 * 241.24745 * 2 1 3 5 5 N 1.48067 * 112.46757 * 197.96570 * 4 2 1 6 6 C 1.44577 * 113.85289 * 318.31540 * 5 4 2 7 7 C 1.54203 * 108.84630 * 94.23755 * 6 5 4 8 8 N 1.40019 * 112.08095 * 281.17585 * 7 6 5 9 9 C 1.46894 * 111.00109 * 188.09320 * 8 7 6 10 10 C 1.53009 * 109.46764 * 66.05231 * 9 8 7 11 11 O 1.42899 * 109.47113 * 64.99856 * 10 9 8 12 12 C 1.42903 * 113.99629 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.46878 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00559 * 17 15 13 19 19 H 1.48503 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47431 * 300.00157 * 17 15 13 21 21 C 1.47912 * 114.06309 * 61.81001 * 8 7 6 22 22 H 1.08998 * 109.47067 * 178.75788 * 1 2 3 23 23 H 1.09002 * 109.46989 * 298.74690 * 1 2 3 24 24 H 1.08998 * 109.47151 * 58.75263 * 1 2 3 25 25 H 1.09000 * 108.88448 * 77.19400 * 4 2 1 26 26 H 1.09004 * 108.88444 * 318.73560 * 4 2 1 27 27 H 1.00897 * 111.00095 * 84.44251 * 5 4 2 28 28 H 1.08993 * 109.57419 * 334.42006 * 6 5 4 29 29 H 1.09003 * 109.57201 * 214.04053 * 6 5 4 30 30 H 1.08997 * 108.95894 * 160.51512 * 7 6 5 31 31 H 1.08996 * 108.89429 * 41.80071 * 7 6 5 32 32 H 1.09000 * 109.47283 * 306.05179 * 9 8 7 33 33 H 1.09002 * 109.47562 * 186.04499 * 9 8 7 34 34 H 1.09007 * 109.46516 * 304.99789 * 10 9 8 35 35 H 1.09004 * 109.47113 * 185.00258 * 10 9 8 36 36 H 1.09002 * 109.47382 * 59.99956 * 12 11 10 37 37 H 1.09001 * 109.46938 * 299.99942 * 12 11 10 38 38 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 39 39 H 1.09005 * 109.63355 * 39.77715 * 21 8 7 40 40 H 1.08995 * 109.63250 * 160.37170 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8838 1.0309 0.0000 4 6 2.0292 -0.6992 -1.2744 5 7 3.4440 -1.1233 -1.1699 6 6 4.3023 -0.1458 -0.5389 7 6 4.4076 -0.4720 0.9645 8 7 3.2808 -0.0427 1.6764 9 6 3.4851 -0.1894 3.1236 10 6 4.5903 0.7644 3.5819 11 8 4.1616 2.1147 3.3955 12 6 5.1261 3.0909 3.7941 13 6 4.5719 4.4717 3.5543 14 1 3.5820 4.5917 3.1395 15 6 5.3283 5.5817 3.8656 16 7 6.5334 5.4355 4.3712 17 14 4.6410 7.2932 3.5690 18 1 3.3983 7.4719 4.3622 19 1 5.6433 8.3077 3.9831 20 1 4.3352 7.4606 2.1255 21 6 2.0181 -0.6853 1.2515 22 1 -0.3633 -1.0274 -0.0223 23 1 -0.3633 0.4943 0.9010 24 1 -0.3633 0.5331 -0.8786 25 1 1.9276 -0.0138 -2.1158 26 1 1.4106 -1.5772 -1.4605 27 1 3.5200 -2.0198 -0.7133 28 1 3.8782 0.8499 -0.6679 29 1 5.2934 -0.1841 -0.9911 30 1 5.2917 0.0180 1.3721 31 1 4.5131 -1.5501 1.0852 32 1 3.7752 -1.2160 3.3474 33 1 2.5593 0.0489 3.6473 34 1 5.4913 0.5849 2.9953 35 1 4.8036 0.5932 4.6371 36 1 6.0381 2.9597 3.2116 37 1 5.3509 2.9681 4.8536 38 1 7.0657 6.2165 4.5898 39 1 2.1956 -1.7409 1.0455 40 1 1.2721 -0.5834 2.0396 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385166925.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:24 Heat of formation + Delta-G solvation = -65.517153 kcal Electronic energy + Delta-G solvation = -18254.053613 eV Core-core repulsion = 15488.679839 eV Total energy + Delta-G solvation = -2765.373774 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.82759 -38.55430 -36.37759 -34.85772 -34.76741 -31.10407 -29.31694 -28.70529 -26.54391 -25.52671 -24.47092 -23.41396 -21.71140 -20.54258 -18.62332 -17.60015 -17.44702 -16.95187 -16.61633 -16.42406 -16.20929 -15.80636 -15.05630 -14.63805 -14.45707 -14.15345 -13.84228 -13.55849 -13.41299 -13.13427 -12.94630 -12.77684 -12.68503 -12.55017 -12.35006 -12.19304 -12.10432 -11.78397 -11.49234 -11.36155 -11.24975 -10.85113 -10.18768 -9.29236 -9.09524 -8.32261 -6.44393 1.38652 1.43647 1.52043 2.34417 2.86009 3.01317 3.21517 3.35186 3.83579 3.87525 4.02369 4.10876 4.18891 4.27630 4.32007 4.42936 4.49403 4.55376 4.64604 4.66800 4.77973 4.80107 4.84524 4.90668 4.94804 5.02614 5.11030 5.17786 5.26170 5.33475 5.41458 5.54604 5.96834 6.08453 6.16931 6.46431 6.52770 6.57451 6.85298 7.27805 8.79953 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.026188 B = 0.005249 C = 0.004956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.921976 B = 5332.712229 C = 5648.287458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.123 4.123 3 H 0.051 0.949 4 C 0.070 3.930 5 N -0.696 5.696 6 C 0.073 3.927 7 C 0.041 3.959 8 N -0.564 5.564 9 C 0.076 3.924 10 C 0.055 3.945 11 O -0.394 6.394 12 C 0.211 3.789 13 C -0.547 4.547 14 H 0.059 0.941 15 C 0.007 3.993 16 N -0.931 5.931 17 Si 0.982 3.018 18 H -0.265 1.265 19 H -0.273 1.273 20 H -0.267 1.267 21 C 0.074 3.926 22 H 0.070 0.930 23 H 0.049 0.951 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.087 0.913 27 H 0.345 0.655 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.038 0.962 35 H 0.046 0.954 36 H -0.019 1.019 37 H -0.017 1.017 38 H 0.271 0.729 39 H 0.048 0.952 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.076 -15.375 -8.224 19.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.144 4.144 3 H 0.070 0.930 4 C -0.059 4.059 5 N -0.326 5.326 6 C -0.057 4.057 7 C -0.090 4.090 8 N -0.289 5.289 9 C -0.051 4.051 10 C -0.023 4.023 11 O -0.314 6.314 12 C 0.135 3.865 13 C -0.584 4.584 14 H 0.077 0.923 15 C -0.191 4.191 16 N -0.570 5.570 17 Si 0.804 3.196 18 H -0.190 1.190 19 H -0.198 1.198 20 H -0.192 1.192 21 C -0.052 4.052 22 H 0.089 0.911 23 H 0.068 0.932 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.106 0.894 27 H 0.164 0.836 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.056 0.944 35 H 0.064 0.936 36 H -0.002 1.002 37 H 0.001 0.999 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.984 -14.553 -8.966 19.310 hybrid contribution 0.378 0.094 1.405 1.458 sum -8.605 -14.458 -7.562 18.446 Atomic orbital electron populations 1.21766 0.93188 1.02544 1.01938 1.21580 0.97244 1.00361 0.95181 0.93031 1.22431 0.87549 1.00211 0.95669 1.59636 1.08388 1.05968 1.58604 1.21773 0.97858 0.95848 0.90252 1.21697 0.93480 0.97430 0.96354 1.58877 1.03745 1.62202 1.04079 1.22028 0.98855 0.96452 0.87762 1.22664 0.97248 0.83759 0.98608 1.87901 1.43018 1.14390 1.86066 1.19768 0.87395 0.87225 0.92069 1.21334 1.02671 0.90930 1.43477 0.92309 1.25946 0.94953 1.04125 0.94095 1.70063 1.11075 1.32198 1.43685 0.85258 0.78311 0.76866 0.79119 1.18950 1.19795 1.19185 1.21937 0.90229 0.95649 0.97425 0.91058 0.93232 0.92075 0.91793 0.89423 0.83561 0.92546 0.90007 0.92229 0.94961 0.91307 0.90244 0.94419 0.93557 1.00168 0.99902 0.92047 0.93357 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 8.85 71.98 0.64 -1.79 16 2 C -0.12 -2.75 2.25 -11.27 -0.03 -2.77 16 3 H 0.05 1.56 7.23 -2.39 -0.02 1.54 16 4 C 0.07 1.37 5.87 86.31 0.51 1.88 16 5 N -0.70 -14.74 6.53 -512.98 -3.35 -18.09 16 6 C 0.07 1.88 6.31 87.15 0.55 2.43 16 7 C 0.04 1.12 4.82 87.95 0.42 1.54 16 8 N -0.56 -16.54 4.03 -912.42 -3.68 -20.22 16 9 C 0.08 2.24 5.34 86.31 0.46 2.70 16 10 C 0.05 2.08 5.97 71.99 0.43 2.51 16 11 O -0.39 -20.01 10.27 -148.98 -1.53 -21.54 16 12 C 0.21 12.26 5.69 71.24 0.41 12.67 16 13 C -0.55 -33.60 9.43 25.60 0.24 -33.36 16 14 H 0.06 3.60 7.81 -2.91 -0.02 3.58 16 15 C 0.01 0.43 5.46 84.66 0.46 0.89 16 16 N -0.93 -57.06 13.29 21.45 0.28 -56.77 16 17 Si 0.98 45.37 29.54 68.60 2.03 47.40 16 18 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 21 C 0.07 1.69 4.84 85.40 0.41 2.10 16 22 H 0.07 0.98 8.11 -2.39 -0.02 0.96 16 23 H 0.05 0.97 8.02 -2.39 -0.02 0.95 16 24 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.09 1.32 7.95 -2.39 -0.02 1.30 16 27 H 0.35 6.28 7.50 -89.70 -0.67 5.61 16 28 H 0.06 1.75 6.93 -2.39 -0.02 1.73 16 29 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.06 1.87 5.84 -2.39 -0.01 1.85 16 31 H 0.03 0.74 7.56 -2.39 -0.02 0.72 16 32 H 0.07 1.60 8.11 -2.39 -0.02 1.58 16 33 H 0.08 2.34 7.70 -2.39 -0.02 2.32 16 34 H 0.04 1.43 6.16 -2.38 -0.01 1.41 16 35 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 36 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 37 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 38 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 39 H 0.05 0.93 7.13 -2.38 -0.02 0.91 16 40 H 0.08 1.74 7.11 -2.39 -0.02 1.72 16 Total: -1.00 -68.05 310.15 -1.41 -69.46 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 0.33 Total: 10.97 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: 4.51 Total: -11.21 kcal Atomic # 7 Polarization: -88.34 SS G_CDS: -6.74 Total: -95.08 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -1.53 Total: -21.54 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -68.05 -1.41 -69.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385166925.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.944 kcal (2) G-P(sol) polarization free energy of solvation -68.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds