Wall clock time and date at job start Mon Mar 30 2020 04:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 108.86945 * 2 1 4 4 C 1.50800 * 108.95761 * 118.70985 * 2 1 3 5 5 N 1.47904 * 108.50094 * 213.22072 * 4 2 1 6 6 C 1.40016 * 114.07128 * 280.08358 * 5 4 2 7 7 C 1.54202 * 112.08325 * 61.80197 * 6 5 4 8 8 N 1.44571 * 108.85206 * 281.18208 * 7 6 5 9 9 C 1.46900 * 111.00490 * 220.35064 * 8 7 6 10 10 C 1.52995 * 109.46868 * 293.53356 * 9 8 7 11 11 O 1.42904 * 109.47493 * 65.82707 * 10 9 8 12 12 C 1.42902 * 114.00291 * 179.97438 * 11 10 9 13 13 C 1.50693 * 109.46943 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00285 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99971 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99716 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00267 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47105 * 60.00281 * 17 15 13 19 19 H 1.48506 * 109.47018 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47037 * 300.00032 * 17 15 13 21 21 C 1.48068 * 113.85005 * 94.23093 * 8 7 6 22 22 H 1.08996 * 109.46602 * 301.29156 * 1 2 3 23 23 H 1.09004 * 109.46676 * 61.28762 * 1 2 3 24 24 H 1.08995 * 109.47066 * 181.29200 * 1 2 3 25 25 H 1.09001 * 109.63082 * 93.51944 * 4 2 1 26 26 H 1.09004 * 109.62985 * 332.92764 * 4 2 1 27 27 H 1.00898 * 111.00034 * 153.78993 * 5 4 2 28 28 H 1.08992 * 108.95962 * 182.47844 * 6 5 4 29 29 H 1.08998 * 108.95425 * 301.22147 * 6 5 4 30 30 H 1.08995 * 109.57368 * 40.99727 * 7 6 5 31 31 H 1.09005 * 109.56955 * 161.37803 * 7 6 5 32 32 H 1.08996 * 109.46542 * 53.52986 * 9 8 7 33 33 H 1.08993 * 109.47528 * 173.53076 * 9 8 7 34 34 H 1.09004 * 109.47208 * 185.82692 * 10 9 8 35 35 H 1.08999 * 109.47121 * 305.82730 * 10 9 8 36 36 H 1.08998 * 109.47257 * 300.00480 * 12 11 10 37 37 H 1.08997 * 109.46500 * 59.99895 * 12 11 10 38 38 H 0.96998 * 120.00017 * 179.97438 * 16 15 13 39 39 H 1.08996 * 108.88158 * 79.09306 * 21 8 7 40 40 H 1.09003 * 108.87813 * 197.64896 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8825 1.0315 0.0000 4 6 2.0199 -0.6851 1.2509 5 7 3.2821 -0.0413 1.6750 6 6 4.4089 -0.4687 0.9622 7 6 4.3021 -0.1422 -0.5411 8 7 3.4447 -1.1204 -1.1719 9 6 3.9732 -1.5155 -2.4844 10 6 3.9119 -0.3216 -3.4392 11 8 4.8023 0.6990 -2.9835 12 6 4.8218 1.8648 -3.8098 13 6 5.7895 2.8690 -3.2388 14 1 6.3353 2.6398 -2.3354 15 6 5.9780 4.0804 -3.8695 16 7 5.3137 4.3593 -4.9698 17 14 7.1770 5.3256 -3.1614 18 1 8.5369 4.7311 -3.1127 19 1 7.1973 6.5370 -4.0202 20 1 6.7502 5.6984 -1.7888 21 6 2.0293 -0.6981 -1.2751 22 1 -0.3632 0.5338 0.8782 23 1 -0.3633 0.4937 -0.9014 24 1 -0.3633 -1.0274 0.0232 25 1 2.1985 -1.7404 1.0444 26 1 1.2743 -0.5843 2.0396 27 1 3.4233 -0.1421 2.6689 28 1 5.2927 0.0222 1.3693 29 1 4.5159 -1.5467 1.0824 30 1 3.8767 0.8531 -0.6693 31 1 5.2930 -0.1790 -0.9940 32 1 5.0076 -1.8416 -2.3762 33 1 3.3746 -2.3331 -2.8860 34 1 4.2063 -0.6406 -4.4391 35 1 2.8949 0.0694 -3.4672 36 1 5.1352 1.5909 -4.8172 37 1 3.8237 2.3012 -3.8459 38 1 5.4461 5.2117 -5.4134 39 1 1.9262 -0.0124 -2.1161 40 1 1.4115 -1.5770 -1.4593 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385166932.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:28 Heat of formation + Delta-G solvation = -42.693403 kcal Electronic energy + Delta-G solvation = -18637.888759 eV Core-core repulsion = 15873.504697 eV Total energy + Delta-G solvation = -2764.384062 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.34166 -36.93011 -34.86292 -33.90529 -32.64761 -29.46934 -27.71721 -26.78476 -25.69973 -24.47496 -22.37404 -21.60056 -20.36269 -19.06196 -16.54391 -16.40032 -16.13227 -15.47600 -15.21314 -14.77242 -14.47595 -14.20239 -13.63868 -13.28788 -13.07334 -12.68459 -12.47250 -12.30969 -11.99831 -11.62047 -11.22704 -11.12566 -10.92114 -10.85846 -10.72277 -10.62474 -10.56643 -10.44016 -10.23314 -10.05603 -9.12098 -8.82053 -8.19824 -8.11770 -7.74891 -6.11202 -4.13086 3.32273 3.34820 3.38760 4.21391 4.35018 4.42660 4.89897 4.93268 5.14488 5.25139 5.25443 5.46280 5.55995 5.57206 5.66490 5.73413 5.79618 5.83420 5.88711 5.91632 5.97831 6.07060 6.10096 6.19834 6.27475 6.36260 6.45964 6.52404 6.82631 7.08869 7.34894 7.40961 7.51049 7.64960 7.72546 7.78262 8.14246 8.55207 8.99452 9.51829 11.00321 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.024699 B = 0.006087 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.396331 B = 4598.664789 C = 4866.898734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.095 4.095 3 H 0.082 0.918 4 C 0.079 3.921 5 N -0.701 5.701 6 C 0.078 3.922 7 C 0.071 3.929 8 N -0.547 5.547 9 C 0.064 3.936 10 C 0.022 3.978 11 O -0.390 6.390 12 C 0.196 3.804 13 C -0.513 4.513 14 H 0.065 0.935 15 C 0.057 3.943 16 N -0.899 5.899 17 Si 0.907 3.093 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.060 3.940 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.044 0.956 26 H 0.063 0.937 27 H 0.338 0.662 28 H 0.066 0.934 29 H 0.018 0.982 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.038 0.962 35 H 0.039 0.961 36 H 0.003 0.997 37 H 0.001 0.999 38 H 0.264 0.736 39 H 0.041 0.959 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.175 -11.275 9.758 16.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 H 0.100 0.900 4 C -0.049 4.049 5 N -0.333 5.333 6 C -0.054 4.054 7 C -0.058 4.058 8 N -0.271 5.271 9 C -0.065 4.065 10 C -0.057 4.057 11 O -0.310 6.310 12 C 0.122 3.878 13 C -0.551 4.551 14 H 0.084 0.916 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.734 3.266 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.067 4.067 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.157 0.843 28 H 0.084 0.916 29 H 0.036 0.964 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.020 0.980 37 H 0.019 0.981 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.149 -11.032 9.657 16.311 hybrid contribution 0.489 0.679 -0.331 0.900 sum -6.660 -10.353 9.326 15.443 Atomic orbital electron populations 1.21822 0.95036 1.01370 1.01812 1.21029 0.94948 1.01302 0.94157 0.89966 1.21628 0.90637 0.96426 0.96226 1.57598 1.03454 1.64005 1.08200 1.20912 0.92059 0.97132 0.95277 1.21926 0.97764 0.94391 0.91717 1.61018 1.01876 1.43249 1.20940 1.22248 1.00849 0.95452 0.87904 1.23018 0.94168 0.91100 0.97430 1.87894 1.62553 1.27590 1.52916 1.20162 0.96342 0.81477 0.89814 1.20990 1.23762 0.99445 1.10928 0.91630 1.24948 0.96486 0.98106 0.94924 1.69956 1.41831 1.23879 1.18181 0.86407 0.81165 0.80024 0.78969 1.20007 1.21170 1.19954 1.22487 0.88887 0.98415 0.96915 0.92545 0.92660 0.92937 0.93760 0.91815 0.84327 0.91559 0.96408 0.92138 0.89604 0.90188 0.90549 0.94358 0.94302 0.97960 0.98079 0.92619 0.94043 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.81 37.16 0.33 -1.20 16 2 C -0.10 -1.27 2.25 -91.36 -0.21 -1.48 16 3 H 0.08 1.34 7.23 -51.93 -0.38 0.96 16 4 C 0.08 0.97 5.74 -4.37 -0.03 0.95 16 5 N -0.70 -9.28 6.21 -118.33 -0.73 -10.01 16 6 C 0.08 1.12 6.11 -6.75 -0.04 1.08 16 7 C 0.07 1.22 3.88 -4.44 -0.02 1.20 16 8 N -0.55 -8.53 4.12 -234.31 -0.96 -9.49 16 9 C 0.06 0.98 5.75 -3.83 -0.02 0.96 16 10 C 0.02 0.41 5.86 37.16 0.22 0.63 16 11 O -0.39 -9.18 7.45 -35.23 -0.26 -9.44 16 12 C 0.20 5.41 5.69 36.00 0.20 5.62 16 13 C -0.51 -15.12 9.43 -34.44 -0.32 -15.44 16 14 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16 17 Si 0.91 22.04 29.54 -169.99 -5.02 17.02 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.06 0.87 4.73 -2.82 -0.01 0.86 16 22 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.04 0.57 7.57 -51.93 -0.39 0.18 16 26 H 0.06 0.67 7.71 -51.93 -0.40 0.27 16 27 H 0.34 3.66 8.85 -39.29 -0.35 3.32 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.02 0.26 8.06 -51.93 -0.42 -0.16 16 30 H 0.06 1.24 6.70 -51.93 -0.35 0.90 16 31 H 0.09 1.64 6.41 -51.93 -0.33 1.31 16 32 H 0.08 1.23 7.90 -51.93 -0.41 0.82 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.04 0.74 5.90 -51.93 -0.31 0.43 16 36 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 37 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.04 0.68 5.65 -51.93 -0.29 0.39 16 40 H 0.06 0.81 7.97 -51.93 -0.41 0.40 16 LS Contribution 306.78 15.07 4.62 4.62 Total: -1.00 -30.66 306.78 -8.58 -39.24 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -6.96 Total: -0.21 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: 0.00 Total: -5.29 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: -0.96 Total: -45.94 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -0.26 Total: -9.44 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.66 -8.58 -39.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385166932.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.454 kcal (2) G-P(sol) polarization free energy of solvation -30.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds