Wall clock time and date at job start Mon Mar 30 2020 04:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 108.86945 * 2 1 4 4 C 1.50800 * 108.95761 * 118.70985 * 2 1 3 5 5 N 1.47904 * 108.50094 * 213.22072 * 4 2 1 6 6 C 1.40016 * 114.07128 * 280.08358 * 5 4 2 7 7 C 1.54202 * 112.08325 * 61.80197 * 6 5 4 8 8 N 1.44571 * 108.85206 * 281.18208 * 7 6 5 9 9 C 1.46900 * 111.00490 * 220.35064 * 8 7 6 10 10 C 1.52995 * 109.46868 * 293.53356 * 9 8 7 11 11 O 1.42904 * 109.47493 * 65.82707 * 10 9 8 12 12 C 1.42902 * 114.00291 * 179.97438 * 11 10 9 13 13 C 1.50693 * 109.46943 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00285 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99971 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99716 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00267 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47105 * 60.00281 * 17 15 13 19 19 H 1.48506 * 109.47018 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47037 * 300.00032 * 17 15 13 21 21 C 1.48068 * 113.85005 * 94.23093 * 8 7 6 22 22 H 1.08996 * 109.46602 * 301.29156 * 1 2 3 23 23 H 1.09004 * 109.46676 * 61.28762 * 1 2 3 24 24 H 1.08995 * 109.47066 * 181.29200 * 1 2 3 25 25 H 1.09001 * 109.63082 * 93.51944 * 4 2 1 26 26 H 1.09004 * 109.62985 * 332.92764 * 4 2 1 27 27 H 1.00898 * 111.00034 * 153.78993 * 5 4 2 28 28 H 1.08992 * 108.95962 * 182.47844 * 6 5 4 29 29 H 1.08998 * 108.95425 * 301.22147 * 6 5 4 30 30 H 1.08995 * 109.57368 * 40.99727 * 7 6 5 31 31 H 1.09005 * 109.56955 * 161.37803 * 7 6 5 32 32 H 1.08996 * 109.46542 * 53.52986 * 9 8 7 33 33 H 1.08993 * 109.47528 * 173.53076 * 9 8 7 34 34 H 1.09004 * 109.47208 * 185.82692 * 10 9 8 35 35 H 1.08999 * 109.47121 * 305.82730 * 10 9 8 36 36 H 1.08998 * 109.47257 * 300.00480 * 12 11 10 37 37 H 1.08997 * 109.46500 * 59.99895 * 12 11 10 38 38 H 0.96998 * 120.00017 * 179.97438 * 16 15 13 39 39 H 1.08996 * 108.88158 * 79.09306 * 21 8 7 40 40 H 1.09003 * 108.87813 * 197.64896 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8825 1.0315 0.0000 4 6 2.0199 -0.6851 1.2509 5 7 3.2821 -0.0413 1.6750 6 6 4.4089 -0.4687 0.9622 7 6 4.3021 -0.1422 -0.5411 8 7 3.4447 -1.1204 -1.1719 9 6 3.9732 -1.5155 -2.4844 10 6 3.9119 -0.3216 -3.4392 11 8 4.8023 0.6990 -2.9835 12 6 4.8218 1.8648 -3.8098 13 6 5.7895 2.8690 -3.2388 14 1 6.3353 2.6398 -2.3354 15 6 5.9780 4.0804 -3.8695 16 7 5.3137 4.3593 -4.9698 17 14 7.1770 5.3256 -3.1614 18 1 8.5369 4.7311 -3.1127 19 1 7.1973 6.5370 -4.0202 20 1 6.7502 5.6984 -1.7888 21 6 2.0293 -0.6981 -1.2751 22 1 -0.3632 0.5338 0.8782 23 1 -0.3633 0.4937 -0.9014 24 1 -0.3633 -1.0274 0.0232 25 1 2.1985 -1.7404 1.0444 26 1 1.2743 -0.5843 2.0396 27 1 3.4233 -0.1421 2.6689 28 1 5.2927 0.0222 1.3693 29 1 4.5159 -1.5467 1.0824 30 1 3.8767 0.8531 -0.6693 31 1 5.2930 -0.1790 -0.9940 32 1 5.0076 -1.8416 -2.3762 33 1 3.3746 -2.3331 -2.8860 34 1 4.2063 -0.6406 -4.4391 35 1 2.8949 0.0694 -3.4672 36 1 5.1352 1.5909 -4.8172 37 1 3.8237 2.3012 -3.8459 38 1 5.4461 5.2117 -5.4134 39 1 1.9262 -0.0124 -2.1161 40 1 1.4115 -1.5770 -1.4593 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385166932.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:27 Heat of formation + Delta-G solvation = -65.306555 kcal Electronic energy + Delta-G solvation = -18638.869339 eV Core-core repulsion = 15873.504697 eV Total energy + Delta-G solvation = -2765.364641 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.60339 -38.58715 -36.29404 -35.03725 -34.80821 -30.98404 -29.35143 -28.38563 -26.85548 -25.75610 -24.53192 -22.96356 -21.55121 -20.28618 -18.63948 -17.78896 -17.58852 -17.16093 -16.57516 -16.31719 -16.03141 -15.70922 -15.20191 -14.88499 -14.21518 -14.03443 -13.79063 -13.60837 -13.45160 -13.07511 -13.03451 -12.76495 -12.69047 -12.31374 -12.15215 -12.06058 -11.96008 -11.75091 -11.60841 -11.39426 -11.29037 -10.88302 -10.26572 -9.19794 -9.10089 -8.35725 -6.48446 1.36666 1.41673 1.49950 2.31241 2.92483 2.98079 3.19636 3.41645 3.88748 4.01316 4.07375 4.19600 4.26039 4.34528 4.40882 4.49979 4.63065 4.67274 4.75433 4.76487 4.79008 4.83527 4.88629 4.93382 4.99789 5.10122 5.15783 5.21092 5.31869 5.34379 5.48896 5.50413 5.91308 6.13376 6.23437 6.45911 6.49591 6.74106 6.76374 7.23449 8.76565 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.024699 B = 0.006087 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.396331 B = 4598.664789 C = 4866.898734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 H 0.044 0.956 4 C 0.084 3.916 5 N -0.713 5.713 6 C 0.089 3.911 7 C 0.079 3.921 8 N -0.539 5.539 9 C 0.070 3.930 10 C 0.014 3.986 11 O -0.395 6.395 12 C 0.213 3.787 13 C -0.545 4.545 14 H 0.062 0.938 15 C 0.006 3.994 16 N -0.932 5.932 17 Si 0.982 3.018 18 H -0.263 1.263 19 H -0.274 1.274 20 H -0.266 1.266 21 C 0.059 3.941 22 H 0.067 0.933 23 H 0.047 0.953 24 H 0.072 0.928 25 H 0.045 0.955 26 H 0.088 0.912 27 H 0.355 0.645 28 H 0.068 0.932 29 H 0.027 0.973 30 H 0.018 0.982 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.045 0.955 35 H 0.035 0.965 36 H -0.018 1.018 37 H -0.025 1.025 38 H 0.271 0.729 39 H 0.015 0.985 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.357 -12.168 11.296 18.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.114 4.114 3 H 0.063 0.937 4 C -0.044 4.044 5 N -0.347 5.347 6 C -0.043 4.043 7 C -0.051 4.051 8 N -0.262 5.262 9 C -0.058 4.058 10 C -0.065 4.065 11 O -0.315 6.315 12 C 0.138 3.862 13 C -0.582 4.582 14 H 0.080 0.920 15 C -0.192 4.192 16 N -0.571 5.571 17 Si 0.804 3.196 18 H -0.188 1.188 19 H -0.199 1.199 20 H -0.191 1.191 21 C -0.068 4.068 22 H 0.086 0.914 23 H 0.066 0.934 24 H 0.091 0.909 25 H 0.064 0.936 26 H 0.107 0.893 27 H 0.176 0.824 28 H 0.087 0.913 29 H 0.045 0.955 30 H 0.037 0.963 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.131 0.869 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.000 1.000 37 H -0.007 1.007 38 H 0.080 0.920 39 H 0.033 0.967 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.345 -11.949 11.210 17.955 hybrid contribution 0.474 0.907 -0.851 1.331 sum -6.871 -11.042 10.359 16.627 Atomic orbital electron populations 1.21775 0.92753 1.02780 1.02056 1.21024 0.96876 0.99049 0.94408 0.93710 1.21639 0.90615 0.95954 0.96209 1.57509 1.03444 1.64438 1.09281 1.20717 0.92823 0.97584 0.93129 1.21760 0.96368 0.92787 0.94140 1.61174 1.02232 1.42128 1.20681 1.22349 1.01892 0.94494 0.87056 1.23362 0.93060 0.91050 0.98992 1.87887 1.63862 1.27364 1.52409 1.19741 0.94476 0.82762 0.89253 1.21308 1.24756 1.00792 1.11360 0.92006 1.25976 0.98192 1.00037 0.95030 1.70070 1.43000 1.24749 1.19297 0.85253 0.78689 0.77186 0.78434 1.18769 1.19891 1.19117 1.22586 0.88477 0.98951 0.96774 0.91422 0.93360 0.90885 0.93632 0.89325 0.82408 0.91345 0.95502 0.96319 0.91966 0.90003 0.86947 0.93716 0.94652 1.00006 1.00726 0.92039 0.96663 0.89331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 8.81 71.98 0.63 -2.03 16 2 C -0.09 -2.45 2.25 -11.27 -0.03 -2.48 16 3 H 0.04 1.51 7.23 -2.38 -0.02 1.49 16 4 C 0.08 1.88 5.74 85.40 0.49 2.37 16 5 N -0.71 -17.94 6.21 -528.28 -3.28 -21.22 16 6 C 0.09 2.51 6.11 87.95 0.54 3.05 16 7 C 0.08 2.78 3.88 87.15 0.34 3.12 16 8 N -0.54 -16.46 4.12 -895.24 -3.69 -20.15 16 9 C 0.07 2.09 5.75 86.30 0.50 2.59 16 10 C 0.01 0.53 5.86 71.98 0.42 0.95 16 11 O -0.40 -19.50 7.45 -148.98 -1.11 -20.61 16 12 C 0.21 12.34 5.69 71.23 0.41 12.74 16 13 C -0.54 -33.13 9.43 25.60 0.24 -32.89 16 14 H 0.06 3.71 7.81 -2.91 -0.02 3.69 16 15 C 0.01 0.36 5.46 84.65 0.46 0.82 16 16 N -0.93 -57.30 13.29 21.45 0.28 -57.02 16 17 Si 0.98 45.26 29.54 68.60 2.03 47.29 16 18 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 21 C 0.06 1.68 4.73 86.31 0.41 2.09 16 22 H 0.07 1.19 8.08 -2.39 -0.02 1.17 16 23 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 24 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.05 1.04 7.57 -2.39 -0.02 1.02 16 26 H 0.09 1.56 7.71 -2.39 -0.02 1.54 16 27 H 0.35 6.94 8.85 -89.70 -0.79 6.15 16 28 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.03 0.72 8.06 -2.39 -0.02 0.70 16 30 H 0.02 0.80 6.70 -2.39 -0.02 0.79 16 31 H 0.06 2.46 6.41 -2.38 -0.02 2.45 16 32 H 0.08 2.44 7.90 -2.39 -0.02 2.42 16 33 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.04 1.39 5.90 -2.39 -0.01 1.38 16 36 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 37 H -0.02 -1.54 8.14 -2.39 -0.02 -1.56 16 38 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 39 H 0.02 0.51 5.65 -2.39 -0.01 0.50 16 40 H 0.09 2.08 7.97 -2.39 -0.02 2.06 16 Total: -1.00 -68.07 306.78 -1.15 -69.22 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 0.21 Total: 12.16 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: 4.41 Total: -9.67 kcal Atomic # 7 Polarization: -91.71 SS G_CDS: -6.68 Total: -98.39 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -1.11 Total: -20.61 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -68.07 -1.15 -69.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385166932.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.911 kcal (2) G-P(sol) polarization free energy of solvation -68.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds