Wall clock time and date at job start Mon Mar 30 2020 04:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.48838 * 2 1 4 4 C 1.53050 * 109.48600 * 239.95972 * 2 1 3 5 5 N 1.46965 * 109.36358 * 298.43433 * 4 2 1 6 6 C 1.46902 * 111.00040 * 176.81732 * 5 4 2 7 7 C 1.52995 * 109.47109 * 176.16720 * 6 5 4 8 8 O 1.42899 * 109.47150 * 62.59191 * 7 6 5 9 9 C 1.42907 * 113.99962 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47100 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99738 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00031 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99571 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00162 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47113 * 60.00152 * 14 12 10 16 16 H 1.48493 * 109.47432 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.47211 * 300.00329 * 14 12 10 18 18 C 1.46962 * 110.87750 * 300.68116 * 5 4 2 19 19 C 1.53047 * 109.36430 * 59.32193 * 18 5 4 20 20 H 1.08994 * 109.50762 * 61.57633 * 19 18 5 21 21 C 1.53002 * 109.48747 * 181.63182 * 19 18 5 22 22 N 1.46953 * 109.48628 * 120.06805 * 2 1 3 23 23 H 1.09000 * 109.47806 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47292 * 300.04066 * 1 2 3 25 25 H 1.09000 * 109.47750 * 60.03945 * 1 2 3 26 26 H 1.09002 * 109.48636 * 178.46935 * 4 2 1 27 27 H 1.09001 * 109.51061 * 58.40912 * 4 2 1 28 28 H 1.09001 * 109.47308 * 56.16151 * 6 5 4 29 29 H 1.09003 * 109.46338 * 296.16311 * 6 5 4 30 30 H 1.08995 * 109.47072 * 302.59052 * 7 6 5 31 31 H 1.08999 * 109.47115 * 182.58586 * 7 6 5 32 32 H 1.08992 * 109.46868 * 299.99694 * 9 8 7 33 33 H 1.08999 * 109.46566 * 59.99952 * 9 8 7 34 34 H 0.97003 * 119.99390 * 179.97438 * 13 12 10 35 35 H 1.09003 * 109.48578 * 179.28826 * 18 5 4 36 36 H 1.09002 * 109.48988 * 299.35075 * 18 5 4 37 37 H 1.09003 * 109.46913 * 179.89543 * 21 19 18 38 38 H 1.09004 * 109.47027 * 299.88495 * 21 19 18 39 39 H 1.08995 * 109.47452 * 59.88614 * 21 19 18 40 40 H 1.00902 * 111.00345 * 296.77311 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0405 -0.7223 -1.2490 5 7 1.5807 -2.1180 -1.2270 6 6 1.9876 -2.8257 -2.4483 7 6 1.5757 -4.2957 -2.3471 8 8 0.1525 -4.3865 -2.2563 9 6 -0.3394 -5.7246 -2.1577 10 6 -1.8435 -5.7014 -2.0672 11 1 -2.3710 -4.7591 -2.0839 12 6 -2.5463 -6.8832 -1.9643 13 7 -1.9039 -8.0306 -1.9446 14 14 -4.4107 -6.8545 -1.8529 15 1 -4.9693 -6.2097 -3.0684 16 1 -4.9219 -8.2449 -1.7503 17 1 -4.8230 -6.0861 -0.6509 18 6 2.0710 -2.8121 -0.0280 19 6 1.5604 -2.0897 1.2210 20 1 0.4708 -2.1135 1.2353 21 6 2.1026 -2.7860 2.4708 22 7 2.0202 -0.6941 1.1989 23 1 -0.3635 -1.0276 0.0005 24 1 -0.3634 0.5145 0.8896 25 1 -0.3634 0.5132 -0.8903 26 1 3.1302 -0.6986 -1.2629 27 1 1.6546 -0.2264 -2.1396 28 1 3.0693 -2.7585 -2.5639 29 1 1.5010 -2.3706 -3.3110 30 1 2.0255 -4.7387 -1.4585 31 1 1.9181 -4.8308 -3.2328 32 1 -0.0368 -6.2888 -3.0397 33 1 0.0706 -6.1975 -1.2653 34 1 -2.3983 -8.8620 -1.8718 35 1 1.7070 -3.8395 -0.0282 36 1 3.1610 -2.8121 -0.0280 37 1 1.7403 -2.2702 3.3601 38 1 1.7614 -3.8212 2.4870 39 1 3.1922 -2.7629 2.4559 40 1 1.7408 -0.2080 2.0379 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385176378.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:30 Heat of formation + Delta-G solvation = -43.343961 kcal Electronic energy + Delta-G solvation = -18409.131043 eV Core-core repulsion = 15644.718771 eV Total energy + Delta-G solvation = -2764.412272 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.54148 -36.81714 -34.70424 -33.07949 -32.60877 -29.30274 -27.92504 -26.79435 -26.71469 -24.29809 -22.26649 -21.77998 -20.81099 -18.77831 -16.66021 -16.35408 -15.63102 -15.30822 -15.08850 -14.75669 -14.59532 -14.27442 -13.71551 -13.44607 -12.98727 -12.72650 -12.43046 -12.26574 -11.95949 -11.77388 -11.51151 -11.39041 -11.17115 -10.95481 -10.80817 -10.74892 -10.68784 -10.43366 -10.21902 -9.88665 -9.06432 -8.75785 -8.43918 -8.10984 -7.94726 -6.07382 -4.08308 3.34312 3.36700 3.40958 4.07563 4.17531 4.38290 4.85140 4.89913 5.07196 5.18633 5.22567 5.29022 5.44431 5.47195 5.58172 5.59102 5.68322 5.71031 5.76299 5.87366 5.93690 5.98576 6.02347 6.08845 6.12309 6.25437 6.32466 6.34520 6.56914 7.03621 7.13797 7.24288 7.35917 7.45241 7.47433 7.84210 8.20688 8.65521 9.06151 9.56371 11.04263 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.025378 B = 0.005586 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.042412 B = 5011.394216 C = 5199.077289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.087 3.913 3 H 0.080 0.920 4 C 0.062 3.938 5 N -0.522 5.522 6 C 0.062 3.938 7 C 0.061 3.939 8 O -0.379 6.379 9 C 0.194 3.806 10 C -0.511 4.511 11 H 0.066 0.934 12 C 0.056 3.944 13 N -0.900 5.900 14 Si 0.907 3.093 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.275 1.275 18 C 0.061 3.939 19 C 0.081 3.919 20 H 0.056 0.944 21 C -0.144 4.144 22 N -0.683 5.683 23 H 0.078 0.922 24 H 0.043 0.957 25 H 0.057 0.943 26 H 0.034 0.966 27 H 0.075 0.925 28 H 0.037 0.963 29 H 0.080 0.920 30 H 0.038 0.962 31 H 0.039 0.961 32 H 0.002 0.998 33 H 0.002 0.998 34 H 0.264 0.736 35 H 0.088 0.912 36 H 0.032 0.968 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.256 13.497 4.966 17.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.023 4.023 3 H 0.098 0.902 4 C -0.067 4.067 5 N -0.246 5.246 6 C -0.065 4.065 7 C -0.017 4.017 8 O -0.298 6.298 9 C 0.120 3.880 10 C -0.549 4.549 11 H 0.084 0.916 12 C -0.145 4.145 13 N -0.540 5.540 14 Si 0.734 3.266 15 H -0.200 1.200 16 H -0.212 1.212 17 H -0.201 1.201 18 C -0.067 4.067 19 C -0.029 4.029 20 H 0.074 0.926 21 C -0.202 4.202 22 N -0.315 5.315 23 H 0.097 0.903 24 H 0.062 0.938 25 H 0.076 0.924 26 H 0.052 0.948 27 H 0.094 0.906 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 9.202 13.292 4.703 16.836 hybrid contribution -0.826 -0.288 0.208 0.899 sum 8.376 13.004 4.911 16.229 Atomic orbital electron populations 1.22409 0.96619 1.03857 1.00976 1.21571 0.93610 0.96850 0.90309 0.90212 1.22145 0.97375 0.89729 0.97431 1.62026 1.59547 1.01203 1.01870 1.22129 0.96882 0.94457 0.93066 1.22336 0.86143 0.94280 0.98933 1.87967 1.16542 1.30774 1.94522 1.20169 0.94692 0.78182 0.94974 1.21020 0.90562 0.93200 1.50103 0.91608 1.24940 0.99240 0.95052 0.95290 1.69958 1.35942 0.97488 1.50588 0.86415 0.84425 0.76900 0.78841 1.20036 1.21200 1.20063 1.22255 0.96935 0.98663 0.88829 1.21554 0.98466 0.88013 0.94874 0.92594 1.21778 1.01547 1.00547 0.96342 1.60805 1.63253 1.02794 1.04627 0.90287 0.93802 0.92393 0.94762 0.90626 0.94542 0.90122 0.94447 0.94269 0.98021 0.98011 0.92687 0.89377 0.94946 0.92797 0.91697 0.92191 0.84490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 8.83 37.16 0.33 -1.93 16 2 C 0.09 1.02 3.70 -67.66 -0.25 0.77 16 3 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 4 C 0.06 0.80 5.05 -3.76 -0.02 0.78 16 5 N -0.52 -8.21 4.05 -234.45 -0.95 -9.16 16 6 C 0.06 0.98 5.53 -3.83 -0.02 0.96 16 7 C 0.06 1.16 5.58 37.16 0.21 1.36 16 8 O -0.38 -9.29 10.24 -35.23 -0.36 -9.65 16 9 C 0.19 5.41 5.69 36.01 0.20 5.61 16 10 C -0.51 -15.26 9.43 -34.44 -0.32 -15.58 16 11 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -27.21 13.29 55.43 0.74 -26.48 16 14 Si 0.91 22.14 29.54 -169.99 -5.02 17.12 16 15 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 C 0.06 0.93 4.41 -3.77 -0.02 0.92 16 19 C 0.08 1.09 2.81 -67.66 -0.19 0.90 16 20 H 0.06 0.86 6.34 -51.93 -0.33 0.53 16 21 C -0.14 -1.66 9.46 37.16 0.35 -1.31 16 22 N -0.68 -8.10 6.34 -99.61 -0.63 -8.73 16 23 H 0.08 1.24 5.94 -51.93 -0.31 0.93 16 24 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.04 0.69 6.09 -51.93 -0.32 0.38 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 33 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.09 1.53 5.95 -51.93 -0.31 1.22 16 36 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.34 3.44 8.81 -39.29 -0.35 3.09 16 LS Contribution 313.96 15.07 4.73 4.73 Total: -1.00 -31.24 313.96 -8.39 -39.63 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -7.07 Total: -1.48 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: 0.17 Total: -5.99 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: -0.84 Total: -44.36 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -0.36 Total: -9.65 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.24 -8.39 -39.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385176378.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.712 kcal (2) G-P(sol) polarization free energy of solvation -31.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds