Wall clock time and date at job start Mon Mar 30 2020 04:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.48838 * 2 1 4 4 C 1.53050 * 109.48600 * 239.95972 * 2 1 3 5 5 N 1.46965 * 109.36358 * 298.43433 * 4 2 1 6 6 C 1.46902 * 111.00040 * 176.81732 * 5 4 2 7 7 C 1.52995 * 109.47109 * 176.16720 * 6 5 4 8 8 O 1.42899 * 109.47150 * 62.59191 * 7 6 5 9 9 C 1.42907 * 113.99962 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47100 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99738 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00031 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99571 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00162 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47113 * 60.00152 * 14 12 10 16 16 H 1.48493 * 109.47432 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.47211 * 300.00329 * 14 12 10 18 18 C 1.46962 * 110.87750 * 300.68116 * 5 4 2 19 19 C 1.53047 * 109.36430 * 59.32193 * 18 5 4 20 20 H 1.08994 * 109.50762 * 61.57633 * 19 18 5 21 21 C 1.53002 * 109.48747 * 181.63182 * 19 18 5 22 22 N 1.46953 * 109.48628 * 120.06805 * 2 1 3 23 23 H 1.09000 * 109.47806 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47292 * 300.04066 * 1 2 3 25 25 H 1.09000 * 109.47750 * 60.03945 * 1 2 3 26 26 H 1.09002 * 109.48636 * 178.46935 * 4 2 1 27 27 H 1.09001 * 109.51061 * 58.40912 * 4 2 1 28 28 H 1.09001 * 109.47308 * 56.16151 * 6 5 4 29 29 H 1.09003 * 109.46338 * 296.16311 * 6 5 4 30 30 H 1.08995 * 109.47072 * 302.59052 * 7 6 5 31 31 H 1.08999 * 109.47115 * 182.58586 * 7 6 5 32 32 H 1.08992 * 109.46868 * 299.99694 * 9 8 7 33 33 H 1.08999 * 109.46566 * 59.99952 * 9 8 7 34 34 H 0.97003 * 119.99390 * 179.97438 * 13 12 10 35 35 H 1.09003 * 109.48578 * 179.28826 * 18 5 4 36 36 H 1.09002 * 109.48988 * 299.35075 * 18 5 4 37 37 H 1.09003 * 109.46913 * 179.89543 * 21 19 18 38 38 H 1.09004 * 109.47027 * 299.88495 * 21 19 18 39 39 H 1.08995 * 109.47452 * 59.88614 * 21 19 18 40 40 H 1.00902 * 111.00345 * 296.77311 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0405 -0.7223 -1.2490 5 7 1.5807 -2.1180 -1.2270 6 6 1.9876 -2.8257 -2.4483 7 6 1.5757 -4.2957 -2.3471 8 8 0.1525 -4.3865 -2.2563 9 6 -0.3394 -5.7246 -2.1577 10 6 -1.8435 -5.7014 -2.0672 11 1 -2.3710 -4.7591 -2.0839 12 6 -2.5463 -6.8832 -1.9643 13 7 -1.9039 -8.0306 -1.9446 14 14 -4.4107 -6.8545 -1.8529 15 1 -4.9693 -6.2097 -3.0684 16 1 -4.9219 -8.2449 -1.7503 17 1 -4.8230 -6.0861 -0.6509 18 6 2.0710 -2.8121 -0.0280 19 6 1.5604 -2.0897 1.2210 20 1 0.4708 -2.1135 1.2353 21 6 2.1026 -2.7860 2.4708 22 7 2.0202 -0.6941 1.1989 23 1 -0.3635 -1.0276 0.0005 24 1 -0.3634 0.5145 0.8896 25 1 -0.3634 0.5132 -0.8903 26 1 3.1302 -0.6986 -1.2629 27 1 1.6546 -0.2264 -2.1396 28 1 3.0693 -2.7585 -2.5639 29 1 1.5010 -2.3706 -3.3110 30 1 2.0255 -4.7387 -1.4585 31 1 1.9181 -4.8308 -3.2328 32 1 -0.0368 -6.2888 -3.0397 33 1 0.0706 -6.1975 -1.2653 34 1 -2.3983 -8.8620 -1.8718 35 1 1.7070 -3.8395 -0.0282 36 1 3.1610 -2.8121 -0.0280 37 1 1.7403 -2.2702 3.3601 38 1 1.7614 -3.8212 2.4870 39 1 3.1922 -2.7629 2.4559 40 1 1.7408 -0.2080 2.0379 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385176378.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:29 Heat of formation + Delta-G solvation = -66.482852 kcal Electronic energy + Delta-G solvation = -18410.134421 eV Core-core repulsion = 15644.718771 eV Total energy + Delta-G solvation = -2765.415649 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.66091 -38.56598 -36.05695 -34.82251 -34.08300 -30.83746 -29.10156 -28.68708 -27.78442 -25.58176 -24.46964 -22.82312 -22.16926 -19.84442 -18.61869 -17.81620 -17.41156 -16.65075 -16.43681 -16.23144 -15.92395 -15.74329 -15.05719 -14.90162 -14.64943 -13.87539 -13.72749 -13.54034 -13.25545 -13.20944 -13.00394 -12.77940 -12.67198 -12.46256 -12.41139 -12.28243 -12.02855 -11.82149 -11.60408 -11.34320 -11.21201 -10.85091 -10.18853 -9.45406 -9.10425 -8.32221 -6.44194 1.38412 1.43270 1.51731 2.34173 2.90422 3.01306 3.20480 3.24626 3.84745 3.94253 4.07618 4.20297 4.23555 4.32242 4.39656 4.42118 4.49811 4.60481 4.65339 4.72304 4.77772 4.79555 4.86991 4.92283 4.96570 4.99677 5.07650 5.17866 5.20303 5.29478 5.50349 5.54732 5.96703 5.99642 6.09990 6.23997 6.52748 6.56418 6.84910 7.27842 8.79987 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.025378 B = 0.005586 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.042412 B = 5011.394216 C = 5199.077289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.088 3.912 3 H 0.108 0.892 4 C 0.061 3.939 5 N -0.545 5.545 6 C 0.070 3.930 7 C 0.053 3.947 8 O -0.393 6.393 9 C 0.210 3.790 10 C -0.546 4.546 11 H 0.059 0.941 12 C 0.007 3.993 13 N -0.931 5.931 14 Si 0.981 3.019 15 H -0.265 1.265 16 H -0.273 1.273 17 H -0.267 1.267 18 C 0.065 3.935 19 C 0.084 3.916 20 H 0.031 0.969 21 C -0.138 4.138 22 N -0.677 5.677 23 H 0.041 0.959 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.042 0.958 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.039 0.961 31 H 0.047 0.953 32 H -0.017 1.017 33 H -0.019 1.019 34 H 0.271 0.729 35 H 0.057 0.943 36 H 0.039 0.961 37 H 0.070 0.930 38 H 0.053 0.947 39 H 0.066 0.934 40 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.185 15.071 5.401 18.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.022 4.022 3 H 0.126 0.874 4 C -0.067 4.067 5 N -0.270 5.270 6 C -0.057 4.057 7 C -0.024 4.024 8 O -0.312 6.312 9 C 0.135 3.865 10 C -0.583 4.583 11 H 0.077 0.923 12 C -0.191 4.191 13 N -0.570 5.570 14 Si 0.804 3.196 15 H -0.190 1.190 16 H -0.198 1.198 17 H -0.192 1.192 18 C -0.063 4.063 19 C -0.026 4.026 20 H 0.049 0.951 21 C -0.196 4.196 22 N -0.309 5.309 23 H 0.060 0.940 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.060 0.940 27 H 0.102 0.898 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.001 0.999 33 H -0.001 1.001 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 9.156 14.887 5.142 18.218 hybrid contribution -0.718 -0.758 0.062 1.046 sum 8.438 14.130 5.204 17.260 Atomic orbital electron populations 1.22328 0.97415 1.01613 1.01837 1.21657 0.92862 0.97970 0.89717 0.87432 1.22236 0.97838 0.88040 0.98551 1.62008 1.60563 1.02675 1.01744 1.22056 0.98450 0.91894 0.93348 1.22657 0.83157 0.97270 0.99364 1.87921 1.20093 1.28647 1.94549 1.19772 0.94233 0.79462 0.93009 1.21328 0.91721 0.93506 1.51776 0.92311 1.25941 1.04933 0.94265 0.93986 1.70066 1.38295 0.98262 1.50371 0.85268 0.77363 0.77660 0.79329 1.18994 1.19791 1.19169 1.22149 0.97103 0.97359 0.89689 1.21439 0.96978 0.89294 0.94862 0.95107 1.21727 1.01878 0.99918 0.96092 1.60792 1.62827 1.01898 1.05392 0.93969 0.92365 0.92128 0.94004 0.89775 0.91622 0.90053 0.94261 0.93480 0.99907 1.00092 0.92051 0.92469 0.94237 0.91071 0.92767 0.91464 0.83079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.15 8.83 71.98 0.64 -3.51 16 2 C 0.09 1.87 3.70 44.92 0.17 2.04 16 3 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 4 C 0.06 1.47 5.05 86.31 0.44 1.91 16 5 N -0.54 -16.89 4.05 -895.67 -3.62 -20.51 16 6 C 0.07 2.15 5.53 86.30 0.48 2.63 16 7 C 0.05 2.04 5.58 71.98 0.40 2.44 16 8 O -0.39 -19.95 10.24 -148.98 -1.53 -21.47 16 9 C 0.21 12.21 5.69 71.24 0.41 12.62 16 10 C -0.55 -33.46 9.43 25.60 0.24 -33.22 16 11 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 12 C 0.01 0.42 5.46 84.65 0.46 0.88 16 13 N -0.93 -56.90 13.29 21.45 0.28 -56.61 16 14 Si 0.98 45.28 29.54 68.60 2.03 47.30 16 15 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 18 C 0.07 1.99 4.41 86.31 0.38 2.37 16 19 C 0.08 2.25 2.81 44.92 0.13 2.37 16 20 H 0.03 0.98 6.34 -2.39 -0.02 0.97 16 21 C -0.14 -3.08 9.46 71.98 0.68 -2.40 16 22 N -0.68 -14.67 6.34 -469.07 -2.97 -17.64 16 23 H 0.04 1.33 5.94 -2.39 -0.01 1.32 16 24 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.04 1.50 6.09 -2.39 -0.01 1.49 16 31 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 32 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 33 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 34 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 35 H 0.06 2.08 5.95 -2.39 -0.01 2.06 16 36 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 39 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.35 6.24 8.81 -89.69 -0.79 5.45 16 Total: -1.00 -67.90 313.96 -1.19 -69.10 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.21 Total: 11.70 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: 4.41 Total: -11.87 kcal Atomic # 7 Polarization: -88.45 SS G_CDS: -6.31 Total: -94.77 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -1.53 Total: -21.47 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -67.90 -1.19 -69.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385176378.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.612 kcal (2) G-P(sol) polarization free energy of solvation -67.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds