Wall clock time and date at job start Mon Mar 30 2020 04:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.48258 * 2 1 4 4 C 1.53046 * 109.48853 * 239.95902 * 2 1 3 5 5 N 1.46955 * 109.36415 * 181.60900 * 4 2 1 6 6 C 1.46908 * 110.99905 * 183.18553 * 5 4 2 7 7 C 1.52995 * 109.46877 * 66.20228 * 6 5 4 8 8 O 1.42901 * 109.47193 * 64.99835 * 7 6 5 9 9 C 1.42908 * 113.99641 * 180.02562 * 8 7 6 10 10 C 1.50695 * 109.46571 * 180.02562 * 9 8 7 11 11 H 1.07994 * 120.00612 * 359.97438 * 10 9 8 12 12 C 1.37886 * 119.99722 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99789 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99838 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47098 * 90.00263 * 14 12 10 16 16 H 1.48507 * 109.47042 * 209.99999 * 14 12 10 17 17 H 1.48497 * 109.47386 * 329.99856 * 14 12 10 18 18 C 1.46961 * 110.88014 * 59.32104 * 5 4 2 19 19 C 1.53051 * 109.35983 * 300.67671 * 18 5 4 20 20 H 1.08997 * 109.49405 * 298.41316 * 19 18 5 21 21 C 1.53006 * 109.48767 * 178.36887 * 19 18 5 22 22 N 1.46952 * 109.50762 * 120.03241 * 2 1 3 23 23 H 1.09002 * 109.46973 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47084 * 300.04201 * 1 2 3 25 25 H 1.08999 * 109.47366 * 60.04392 * 1 2 3 26 26 H 1.09002 * 109.49563 * 61.63872 * 4 2 1 27 27 H 1.09001 * 109.48747 * 301.57254 * 4 2 1 28 28 H 1.08994 * 109.46788 * 186.19967 * 6 5 4 29 29 H 1.09001 * 109.46899 * 306.19774 * 6 5 4 30 30 H 1.09000 * 109.46772 * 185.00289 * 7 6 5 31 31 H 1.09002 * 109.46990 * 304.99431 * 7 6 5 32 32 H 1.08999 * 109.46674 * 299.99876 * 9 8 7 33 33 H 1.08993 * 109.47137 * 59.99810 * 9 8 7 34 34 H 0.97002 * 119.99912 * 180.02562 * 13 12 10 35 35 H 1.09003 * 109.48864 * 180.71370 * 18 5 4 36 36 H 1.08995 * 109.49001 * 60.64339 * 18 5 4 37 37 H 1.09001 * 109.47002 * 60.04324 * 21 19 18 38 38 H 1.08993 * 109.46955 * 180.02562 * 21 19 18 39 39 H 1.09000 * 109.47050 * 300.04590 * 21 19 18 40 40 H 1.00899 * 110.98326 * 55.41906 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7223 -1.2490 5 7 3.5097 -0.7545 -1.2269 6 6 4.0411 -1.3742 -2.4483 7 6 3.7178 -0.4872 -3.6523 8 8 4.4103 0.7565 -3.5272 9 6 4.1752 1.6636 -4.6062 10 6 4.9508 2.9343 -4.3721 11 1 5.5617 3.0390 -3.4878 12 6 4.8804 3.9634 -5.2872 13 7 4.1368 3.8357 -6.3644 14 14 5.8412 5.5387 -4.9966 15 1 7.1882 5.4173 -5.6099 16 1 5.1180 6.6803 -5.6126 17 1 5.9810 5.7712 -3.5367 18 6 4.0004 -1.4483 -0.0279 19 6 3.4898 -0.7259 1.2210 20 1 3.8760 0.2933 1.2352 21 6 3.9653 -1.4693 2.4710 22 7 2.0208 -0.6933 1.1992 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5145 0.8896 25 1 -0.3634 0.5131 -0.8904 26 1 1.7018 -0.1928 -2.1395 27 1 1.6547 -1.7416 -1.2628 28 1 5.1216 -1.4854 -2.3586 29 1 3.5851 -2.3546 -2.5862 30 1 4.0330 -0.9883 -4.5675 31 1 2.6441 -0.3032 -3.6901 32 1 4.4996 1.2074 -5.5415 33 1 3.1111 1.8922 -4.6634 34 1 4.0876 4.5595 -7.0083 35 1 5.0904 -1.4479 -0.0281 36 1 3.6367 -2.4758 -0.0279 37 1 5.0549 -1.4940 2.4865 38 1 3.6011 -0.9549 3.3602 39 1 3.5789 -2.4884 2.4566 40 1 1.6374 -1.6246 1.2604 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385176396.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:33 Heat of formation + Delta-G solvation = -49.459196 kcal Electronic energy + Delta-G solvation = -18103.085011 eV Core-core repulsion = 15338.407563 eV Total energy + Delta-G solvation = -2764.677448 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.57078 -36.77627 -34.65841 -33.52981 -32.61397 -29.26473 -28.24090 -26.80812 -26.63935 -23.98959 -22.24516 -21.33699 -20.77147 -20.37323 -16.35718 -16.05429 -15.75987 -15.47307 -15.09461 -14.94605 -14.25823 -14.20902 -14.09589 -13.39697 -13.10058 -12.79520 -12.62228 -12.19110 -12.03202 -11.86724 -11.63876 -11.48580 -11.16405 -11.04131 -10.92503 -10.81741 -10.77906 -10.68050 -10.33561 -9.96373 -9.04502 -8.75853 -8.48013 -8.10651 -8.03961 -6.06473 -4.07281 3.33548 3.38298 3.44570 3.88549 4.12902 4.39133 4.78258 4.93415 4.98796 5.09225 5.17710 5.23121 5.30097 5.33381 5.41802 5.47762 5.57685 5.62359 5.66690 5.68572 5.82923 5.85714 5.99937 6.03688 6.09577 6.11468 6.17454 6.26623 6.29885 6.97524 7.13576 7.20436 7.25273 7.38750 7.48039 7.85466 8.21585 8.66437 9.07461 9.57459 11.05272 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.026100 B = 0.004958 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.548556 B = 5645.726509 C = 5689.972821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.085 3.915 3 H 0.094 0.906 4 C 0.022 3.978 5 N -0.520 5.520 6 C 0.062 3.938 7 C 0.067 3.933 8 O -0.379 6.379 9 C 0.194 3.806 10 C -0.510 4.510 11 H 0.066 0.934 12 C 0.055 3.945 13 N -0.901 5.901 14 Si 0.907 3.093 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.271 1.271 18 C 0.025 3.975 19 C 0.085 3.915 20 H 0.092 0.908 21 C -0.142 4.142 22 N -0.677 5.677 23 H 0.049 0.951 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.085 0.915 27 H 0.024 0.976 28 H 0.081 0.919 29 H 0.035 0.965 30 H 0.038 0.962 31 H 0.035 0.965 32 H 0.001 0.999 33 H 0.003 0.997 34 H 0.263 0.737 35 H 0.079 0.921 36 H 0.025 0.975 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.050 0.950 40 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.708 -12.372 13.186 18.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.025 4.025 3 H 0.112 0.888 4 C -0.107 4.107 5 N -0.244 5.244 6 C -0.066 4.066 7 C -0.011 4.011 8 O -0.298 6.298 9 C 0.120 3.880 10 C -0.548 4.548 11 H 0.085 0.915 12 C -0.145 4.145 13 N -0.540 5.540 14 Si 0.734 3.266 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.196 1.196 18 C -0.105 4.105 19 C -0.026 4.026 20 H 0.110 0.890 21 C -0.200 4.200 22 N -0.307 5.307 23 H 0.068 0.932 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.104 0.896 27 H 0.042 0.958 28 H 0.099 0.901 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.019 0.981 33 H 0.020 0.980 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.043 0.957 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.515 -11.167 13.602 18.169 hybrid contribution 0.174 -0.812 -1.179 1.442 sum -4.340 -11.980 12.423 17.796 Atomic orbital electron populations 1.21768 0.94165 1.01611 1.02513 1.21630 0.94710 0.99478 0.86698 0.88801 1.22922 0.88186 0.98672 1.00946 1.61959 1.07601 1.53474 1.01406 1.22146 1.00731 0.94108 0.89597 1.22240 0.95903 0.87900 0.95071 1.87953 1.69097 1.24589 1.48211 1.20173 0.95759 0.87649 0.84430 1.21062 1.27893 0.98437 1.07412 0.91539 1.24946 0.95790 0.98928 0.94875 1.69969 1.39719 1.33310 1.11033 0.86350 0.79650 0.81998 0.78585 1.20523 1.21123 1.19591 1.22871 1.01148 0.94859 0.91649 1.21633 0.87493 1.00755 0.92688 0.88954 1.21767 1.00997 0.99747 0.97496 1.60939 1.07198 1.22778 1.39748 0.93178 0.91650 0.91751 0.89635 0.95758 0.90104 0.94656 0.94348 0.94662 0.98071 0.97967 0.92753 0.90268 0.95723 0.91977 0.91642 0.93128 0.85175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.45 37.16 0.35 -1.15 16 2 C 0.08 1.09 3.20 -67.66 -0.22 0.87 16 3 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 4 C 0.02 0.31 4.69 -3.77 -0.02 0.30 16 5 N -0.52 -8.14 4.66 -234.46 -1.09 -9.23 16 6 C 0.06 0.97 5.34 -3.82 -0.02 0.95 16 7 C 0.07 1.29 6.00 37.16 0.22 1.51 16 8 O -0.38 -9.46 10.27 -35.23 -0.36 -9.82 16 9 C 0.19 5.47 5.69 36.00 0.20 5.68 16 10 C -0.51 -15.38 9.43 -34.44 -0.32 -15.70 16 11 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 14 Si 0.91 22.25 29.54 -169.99 -5.02 17.23 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 18 C 0.02 0.31 4.89 -3.76 -0.02 0.29 16 19 C 0.08 1.00 3.20 -67.65 -0.22 0.78 16 20 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 21 C -0.14 -1.30 9.45 37.16 0.35 -0.94 16 22 N -0.68 -7.85 6.21 -99.61 -0.62 -8.47 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.09 1.34 6.25 -51.93 -0.32 1.01 16 27 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 1.28 8.03 -51.93 -0.42 0.86 16 29 H 0.04 0.48 8.12 -51.93 -0.42 0.06 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.04 0.66 6.28 -51.93 -0.33 0.34 16 32 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 33 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.08 1.00 8.07 -51.93 -0.42 0.58 16 36 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.33 3.41 8.70 -39.29 -0.34 3.07 16 LS Contribution 319.51 15.07 4.81 4.81 Total: -1.00 -31.66 319.51 -8.61 -40.27 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -7.29 Total: -2.27 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: 0.22 Total: -5.88 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: -0.97 Total: -44.35 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -0.36 Total: -9.82 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.66 -8.61 -40.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385176396.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.185 kcal (2) G-P(sol) polarization free energy of solvation -31.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds