Wall clock time and date at job start Mon Mar 30 2020 04:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.48258 * 2 1 4 4 C 1.53046 * 109.48853 * 239.95902 * 2 1 3 5 5 N 1.46955 * 109.36415 * 181.60900 * 4 2 1 6 6 C 1.46908 * 110.99905 * 183.18553 * 5 4 2 7 7 C 1.52995 * 109.46877 * 66.20228 * 6 5 4 8 8 O 1.42901 * 109.47193 * 64.99835 * 7 6 5 9 9 C 1.42908 * 113.99641 * 180.02562 * 8 7 6 10 10 C 1.50695 * 109.46571 * 180.02562 * 9 8 7 11 11 H 1.07994 * 120.00612 * 359.97438 * 10 9 8 12 12 C 1.37886 * 119.99722 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99789 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99838 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47098 * 90.00263 * 14 12 10 16 16 H 1.48507 * 109.47042 * 209.99999 * 14 12 10 17 17 H 1.48497 * 109.47386 * 329.99856 * 14 12 10 18 18 C 1.46961 * 110.88014 * 59.32104 * 5 4 2 19 19 C 1.53051 * 109.35983 * 300.67671 * 18 5 4 20 20 H 1.08997 * 109.49405 * 298.41316 * 19 18 5 21 21 C 1.53006 * 109.48767 * 178.36887 * 19 18 5 22 22 N 1.46952 * 109.50762 * 120.03241 * 2 1 3 23 23 H 1.09002 * 109.46973 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47084 * 300.04201 * 1 2 3 25 25 H 1.08999 * 109.47366 * 60.04392 * 1 2 3 26 26 H 1.09002 * 109.49563 * 61.63872 * 4 2 1 27 27 H 1.09001 * 109.48747 * 301.57254 * 4 2 1 28 28 H 1.08994 * 109.46788 * 186.19967 * 6 5 4 29 29 H 1.09001 * 109.46899 * 306.19774 * 6 5 4 30 30 H 1.09000 * 109.46772 * 185.00289 * 7 6 5 31 31 H 1.09002 * 109.46990 * 304.99431 * 7 6 5 32 32 H 1.08999 * 109.46674 * 299.99876 * 9 8 7 33 33 H 1.08993 * 109.47137 * 59.99810 * 9 8 7 34 34 H 0.97002 * 119.99912 * 180.02562 * 13 12 10 35 35 H 1.09003 * 109.48864 * 180.71370 * 18 5 4 36 36 H 1.08995 * 109.49001 * 60.64339 * 18 5 4 37 37 H 1.09001 * 109.47002 * 60.04324 * 21 19 18 38 38 H 1.08993 * 109.46955 * 180.02562 * 21 19 18 39 39 H 1.09000 * 109.47050 * 300.04590 * 21 19 18 40 40 H 1.00899 * 110.98326 * 55.41906 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7223 -1.2490 5 7 3.5097 -0.7545 -1.2269 6 6 4.0411 -1.3742 -2.4483 7 6 3.7178 -0.4872 -3.6523 8 8 4.4103 0.7565 -3.5272 9 6 4.1752 1.6636 -4.6062 10 6 4.9508 2.9343 -4.3721 11 1 5.5617 3.0390 -3.4878 12 6 4.8804 3.9634 -5.2872 13 7 4.1368 3.8357 -6.3644 14 14 5.8412 5.5387 -4.9966 15 1 7.1882 5.4173 -5.6099 16 1 5.1180 6.6803 -5.6126 17 1 5.9810 5.7712 -3.5367 18 6 4.0004 -1.4483 -0.0279 19 6 3.4898 -0.7259 1.2210 20 1 3.8760 0.2933 1.2352 21 6 3.9653 -1.4693 2.4710 22 7 2.0208 -0.6933 1.1992 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5145 0.8896 25 1 -0.3634 0.5131 -0.8904 26 1 1.7018 -0.1928 -2.1395 27 1 1.6547 -1.7416 -1.2628 28 1 5.1216 -1.4854 -2.3586 29 1 3.5851 -2.3546 -2.5862 30 1 4.0330 -0.9883 -4.5675 31 1 2.6441 -0.3032 -3.6901 32 1 4.4996 1.2074 -5.5415 33 1 3.1111 1.8922 -4.6634 34 1 4.0876 4.5595 -7.0083 35 1 5.0904 -1.4479 -0.0281 36 1 3.6367 -2.4758 -0.0279 37 1 5.0549 -1.4940 2.4865 38 1 3.6011 -0.9549 3.3602 39 1 3.5789 -2.4884 2.4566 40 1 1.6374 -1.6246 1.2604 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385176396.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:33 Heat of formation + Delta-G solvation = -73.240021 kcal Electronic energy + Delta-G solvation = -18104.116225 eV Core-core repulsion = 15338.407563 eV Total energy + Delta-G solvation = -2765.708662 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.65583 -38.56017 -35.98290 -34.82034 -34.46486 -30.82903 -29.11789 -28.85343 -27.63093 -25.25517 -24.45219 -22.43899 -21.88595 -21.47502 -18.62737 -17.53094 -17.32009 -16.61494 -16.42549 -16.09471 -16.05818 -15.75527 -15.27314 -14.78073 -14.56092 -13.83072 -13.77488 -13.65792 -13.33773 -13.13365 -12.80790 -12.78648 -12.74361 -12.58085 -12.31135 -12.27895 -12.00307 -11.98486 -11.78404 -11.60095 -11.26735 -10.86355 -10.20652 -9.50831 -9.13920 -8.32753 -6.44834 1.38865 1.41964 1.54267 2.34512 2.77837 3.00888 3.18642 3.20201 3.85390 3.97027 3.97700 4.12489 4.20498 4.24934 4.32979 4.42328 4.45279 4.54838 4.62474 4.67016 4.72819 4.77343 4.79653 4.87232 4.91177 4.99865 5.16498 5.17041 5.26060 5.29371 5.33373 5.54463 5.95603 5.96620 6.04166 6.17951 6.52164 6.55286 6.84281 7.27393 8.79747 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.026100 B = 0.004958 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.548556 B = 5645.726509 C = 5689.972821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.088 3.912 3 H 0.060 0.940 4 C 0.027 3.973 5 N -0.552 5.552 6 C 0.071 3.929 7 C 0.058 3.942 8 O -0.395 6.395 9 C 0.210 3.790 10 C -0.546 4.546 11 H 0.058 0.942 12 C 0.007 3.993 13 N -0.931 5.931 14 Si 0.983 3.017 15 H -0.266 1.266 16 H -0.273 1.273 17 H -0.266 1.266 18 C 0.028 3.972 19 C 0.085 3.915 20 H 0.063 0.937 21 C -0.133 4.133 22 N -0.673 5.673 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.044 0.956 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.047 0.953 31 H 0.036 0.964 32 H -0.016 1.016 33 H -0.019 1.019 34 H 0.271 0.729 35 H 0.077 0.923 36 H 0.043 0.957 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.559 -13.064 14.359 19.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.022 4.022 3 H 0.078 0.922 4 C -0.103 4.103 5 N -0.277 5.277 6 C -0.057 4.057 7 C -0.020 4.020 8 O -0.315 6.315 9 C 0.135 3.865 10 C -0.584 4.584 11 H 0.077 0.923 12 C -0.191 4.191 13 N -0.570 5.570 14 Si 0.805 3.195 15 H -0.191 1.191 16 H -0.197 1.197 17 H -0.191 1.191 18 C -0.101 4.101 19 C -0.025 4.025 20 H 0.082 0.918 21 C -0.191 4.191 22 N -0.303 5.303 23 H 0.087 0.913 24 H 0.088 0.912 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.002 0.998 33 H -0.001 1.001 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.376 -11.893 14.788 19.475 hybrid contribution 0.086 -0.665 -1.550 1.689 sum -4.289 -12.558 13.238 18.744 Atomic orbital electron populations 1.21704 0.92257 1.02797 1.02535 1.21522 0.96162 0.97695 0.86856 0.92193 1.22875 0.87529 0.99467 1.00409 1.61900 1.08611 1.54925 1.02287 1.22044 1.00980 0.94338 0.88315 1.22588 0.95616 0.86154 0.97623 1.87906 1.70093 1.26431 1.47019 1.19781 0.94042 0.88033 0.84636 1.21362 1.29077 1.00042 1.07908 0.92332 1.25954 0.96447 1.02575 0.94132 1.70070 1.40451 1.34792 1.11731 0.85192 0.78414 0.77068 0.78789 1.19120 1.19743 1.19071 1.22891 1.01084 0.95541 0.90559 1.21612 0.87554 0.99568 0.93763 0.91831 1.21694 1.01479 1.00073 0.95815 1.60895 1.07143 1.23515 1.38753 0.91346 0.91202 0.92187 0.92022 0.93799 0.90232 0.91484 0.93459 0.94537 0.99845 1.00132 0.92031 0.90407 0.93844 0.91244 0.91521 0.91594 0.83753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.45 71.98 0.68 -2.02 16 2 C 0.09 2.24 3.20 44.92 0.14 2.38 16 3 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 4 C 0.03 0.74 4.69 86.31 0.41 1.14 16 5 N -0.55 -17.00 4.66 -895.71 -4.17 -21.17 16 6 C 0.07 2.16 5.34 86.30 0.46 2.62 16 7 C 0.06 2.24 6.00 71.98 0.43 2.67 16 8 O -0.39 -20.34 10.27 -148.98 -1.53 -21.87 16 9 C 0.21 12.32 5.69 71.23 0.41 12.73 16 10 C -0.55 -33.78 9.43 25.60 0.24 -33.54 16 11 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 12 C 0.01 0.43 5.46 84.66 0.46 0.89 16 13 N -0.93 -57.15 13.29 21.45 0.28 -56.86 16 14 Si 0.98 45.53 29.54 68.60 2.03 47.56 16 15 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 16 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 18 C 0.03 0.68 4.89 86.31 0.42 1.10 16 19 C 0.09 1.93 3.20 44.92 0.14 2.07 16 20 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 21 C -0.13 -2.13 9.45 71.98 0.68 -1.44 16 22 N -0.67 -14.64 6.21 -469.05 -2.92 -17.55 16 23 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 25 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.06 1.97 6.25 -2.39 -0.01 1.96 16 27 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.08 2.44 8.03 -2.39 -0.02 2.42 16 29 H 0.07 1.64 8.12 -2.39 -0.02 1.62 16 30 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.04 1.41 6.28 -2.39 -0.01 1.39 16 32 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 33 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 34 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 35 H 0.08 1.87 8.07 -2.39 -0.02 1.85 16 36 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.34 6.15 8.70 -89.69 -0.78 5.37 16 Total: -1.00 -68.92 319.51 -1.62 -70.55 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 0.21 Total: 10.75 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: 4.48 Total: -11.39 kcal Atomic # 7 Polarization: -88.78 SS G_CDS: -6.80 Total: -95.59 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -1.53 Total: -21.87 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -68.92 -1.62 -70.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385176396.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.694 kcal (2) G-P(sol) polarization free energy of solvation -68.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds