Wall clock time and date at job start Mon Mar 30 2020 04:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.57222 * 2 1 4 4 C 1.53115 * 109.52241 * 239.83909 * 2 1 3 5 5 C 1.53036 * 109.27725 * 182.43999 * 4 2 1 6 6 N 1.46846 * 109.52160 * 59.18167 * 5 4 2 7 7 C 1.46911 * 111.00061 * 174.15995 * 6 5 4 8 8 C 1.53002 * 109.46913 * 200.01135 * 7 6 5 9 9 O 1.42896 * 109.46905 * 65.02484 * 8 7 6 10 10 C 1.42904 * 113.99719 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.47051 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00071 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00090 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00063 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 119.99758 * 359.72278 * 13 11 10 16 16 H 1.48502 * 109.47365 * 90.00341 * 15 13 11 17 17 H 1.48509 * 109.47012 * 210.00248 * 15 13 11 18 18 H 1.48502 * 109.47211 * 330.00071 * 15 13 11 19 19 C 1.46848 * 111.19717 * 298.25221 * 6 5 4 20 20 C 1.53039 * 109.52190 * 61.74716 * 19 6 5 21 21 H 1.09005 * 109.49895 * 60.75646 * 20 19 6 22 22 N 1.46892 * 109.50634 * 180.84004 * 20 19 6 23 23 H 1.09003 * 109.47172 * 299.84526 * 1 2 3 24 24 H 1.09003 * 109.46957 * 59.84282 * 1 2 3 25 25 H 1.09001 * 109.47278 * 179.84518 * 1 2 3 26 26 H 1.09003 * 109.50283 * 302.37798 * 4 2 1 27 27 H 1.08997 * 109.50410 * 62.45780 * 4 2 1 28 28 H 1.08992 * 109.46416 * 299.16493 * 5 4 2 29 29 H 1.09007 * 109.46208 * 179.19070 * 5 4 2 30 30 H 1.09001 * 109.46590 * 80.01219 * 7 6 5 31 31 H 1.08996 * 109.46676 * 320.01360 * 7 6 5 32 32 H 1.08997 * 109.47274 * 305.01594 * 8 7 6 33 33 H 1.09005 * 109.46257 * 185.01937 * 8 7 6 34 34 H 1.09002 * 109.46944 * 60.00326 * 10 9 8 35 35 H 1.08990 * 109.47364 * 299.99974 * 10 9 8 36 36 H 0.97007 * 119.99497 * 179.97438 * 14 13 11 37 37 H 1.09003 * 109.46334 * 181.75727 * 19 6 5 38 38 H 1.08999 * 109.46788 * 301.72856 * 19 6 5 39 39 H 1.00901 * 110.99785 * 299.99911 * 22 20 19 40 40 H 1.00895 * 111.00347 * 63.94882 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0417 -0.7251 -1.2478 5 6 3.5708 -0.7752 -1.2116 6 7 4.0102 -1.4789 0.0001 7 6 5.4671 -1.6678 0.0001 8 6 5.8351 -2.7949 0.9672 9 8 5.2945 -4.0282 0.4890 10 6 5.5828 -5.1516 1.3238 11 6 4.9676 -6.3915 0.7277 12 1 4.4124 -6.3280 -0.1964 13 6 5.1135 -7.6069 1.3621 14 7 4.5762 -8.6888 0.8421 15 14 6.0804 -7.7180 2.9565 16 1 5.1645 -7.5085 4.1065 17 1 6.7087 -9.0595 3.0620 18 1 7.1368 -6.6744 2.9686 19 6 3.5708 -0.7751 1.2117 20 6 2.0417 -0.7249 1.2479 21 1 1.6447 -1.7400 1.2675 22 7 1.6029 -0.0033 2.4498 23 1 -0.3634 0.5114 0.8914 24 1 -0.3633 0.5163 -0.8886 25 1 -0.3634 -1.0277 -0.0028 26 1 1.6447 -1.7400 -1.2673 27 1 1.7155 -0.1895 -2.1393 28 1 3.9674 0.2400 -1.2059 29 1 3.9378 -1.3035 -2.0916 30 1 5.9530 -0.7447 0.3161 31 1 5.7997 -1.9280 -1.0047 32 1 5.4250 -2.5762 1.9530 33 1 6.9201 -2.8757 1.0347 34 1 5.1675 -4.9821 2.3173 35 1 6.6624 -5.2812 1.3986 36 1 4.6792 -9.5439 1.2883 37 1 3.9377 -1.3032 2.0918 38 1 3.9674 0.2402 1.2060 39 1 1.9312 -0.4615 3.2866 40 1 1.9032 0.9595 2.4233 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385181338.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:49 Heat of formation + Delta-G solvation = -78.355273 kcal Electronic energy + Delta-G solvation = -18123.901383 eV Core-core repulsion = 15357.970906 eV Total energy + Delta-G solvation = -2765.930476 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.49569 -38.58876 -36.21821 -34.83070 -34.00293 -31.41357 -29.86036 -29.20118 -27.37346 -23.98193 -23.86974 -23.23604 -22.05648 -20.78330 -19.04262 -17.48494 -17.35329 -16.72564 -16.52453 -16.05781 -15.88745 -15.55706 -15.40659 -14.77632 -14.52533 -14.26359 -14.01462 -13.72969 -13.44966 -13.08622 -13.03672 -12.87412 -12.60928 -12.47208 -12.28866 -12.11424 -11.82668 -11.60489 -11.43037 -11.33250 -11.12174 -10.92161 -10.30043 -9.64608 -9.14504 -8.37052 -6.44642 1.31721 1.35332 1.46101 2.29045 2.86800 2.95306 3.13598 3.61175 3.75312 3.83906 4.07264 4.13472 4.25900 4.29525 4.32911 4.43497 4.50269 4.56236 4.59309 4.63839 4.73598 4.81781 4.86530 4.91774 4.97383 5.02640 5.04625 5.19457 5.25333 5.44480 5.44836 5.54624 5.93898 6.07870 6.17991 6.33140 6.59655 6.61376 6.81211 7.20102 8.80393 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.027683 B = 0.005123 C = 0.005006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.192033 B = 5463.920855 C = 5591.483882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.076 4.076 3 H 0.077 0.923 4 C -0.111 4.111 5 C 0.059 3.941 6 N -0.552 5.552 7 C 0.066 3.934 8 C 0.056 3.944 9 O -0.393 6.393 10 C 0.180 3.820 11 C -0.543 4.543 12 H 0.027 0.973 13 C 0.013 3.987 14 N -0.943 5.943 15 Si 0.957 3.043 16 H -0.260 1.260 17 H -0.272 1.272 18 H -0.246 1.246 19 C 0.031 3.969 20 C 0.101 3.899 21 H 0.056 0.944 22 N -0.836 5.836 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.037 0.963 26 H 0.049 0.951 27 H 0.088 0.912 28 H 0.046 0.954 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.042 0.958 33 H 0.056 0.944 34 H 0.004 0.996 35 H 0.010 0.990 36 H 0.273 0.727 37 H 0.061 0.939 38 H 0.044 0.956 39 H 0.346 0.654 40 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.205 22.466 1.997 22.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.095 4.095 3 H 0.096 0.904 4 C -0.150 4.150 5 C -0.069 4.069 6 N -0.278 5.278 7 C -0.062 4.062 8 C -0.021 4.021 9 O -0.312 6.312 10 C 0.104 3.896 11 C -0.581 4.581 12 H 0.046 0.954 13 C -0.185 4.185 14 N -0.583 5.583 15 Si 0.778 3.222 16 H -0.185 1.185 17 H -0.197 1.197 18 H -0.169 1.169 19 C -0.099 4.099 20 C -0.011 4.011 21 H 0.074 0.926 22 N -0.366 5.366 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.106 0.894 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.022 0.978 35 H 0.028 0.972 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.159 0.841 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.311 21.643 1.594 21.825 hybrid contribution 1.760 0.040 0.784 1.927 sum -0.552 21.684 2.378 21.821 Atomic orbital electron populations 1.21655 0.94181 1.01134 1.02043 1.21115 0.96623 0.98807 0.92973 0.90441 1.21654 0.94206 1.00671 0.98428 1.22116 0.96296 0.96435 0.92027 1.61668 1.12672 1.50701 1.02742 1.22079 0.87828 0.95994 1.00275 1.22667 0.97009 0.85223 0.97225 1.87961 1.77182 1.15920 1.50125 1.20265 0.94495 0.84548 0.90249 1.21157 1.34807 0.92436 1.09689 0.95436 1.25851 0.96335 0.94317 1.02021 1.70043 1.46230 1.00073 1.41908 0.85595 0.79570 0.78785 0.78272 1.18490 1.19658 1.16942 1.22996 0.97758 0.96180 0.92978 1.21380 0.91028 0.97538 0.91183 0.92551 1.58943 1.67057 1.06776 1.03788 0.91656 0.92078 0.94416 0.93242 0.89370 0.93582 0.91324 0.90890 0.90551 0.94023 0.92612 0.97790 0.97211 0.91818 0.92095 0.93786 0.84136 0.84017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 9.07 71.98 0.65 -1.95 16 2 C -0.08 -1.54 2.42 -10.71 -0.03 -1.56 16 3 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 4 C -0.11 -2.48 5.38 30.64 0.16 -2.31 16 5 C 0.06 1.39 5.43 86.33 0.47 1.86 16 6 N -0.55 -15.92 4.53 -896.33 -4.06 -19.98 16 7 C 0.07 1.84 5.39 86.30 0.47 2.31 16 8 C 0.06 1.93 6.13 71.98 0.44 2.37 16 9 O -0.39 -18.99 10.27 -148.98 -1.53 -20.52 16 10 C 0.18 9.38 4.76 71.24 0.34 9.72 16 11 C -0.54 -34.19 9.99 25.60 0.26 -33.94 16 12 H 0.03 1.96 8.06 -2.91 -0.02 1.93 16 13 C 0.01 0.76 5.47 84.65 0.46 1.22 16 14 N -0.94 -60.61 13.96 21.45 0.30 -60.31 16 15 Si 0.96 44.27 27.47 68.60 1.88 46.16 16 16 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 18 H -0.25 -10.47 6.54 99.48 0.65 -9.82 16 19 C 0.03 0.74 4.86 86.33 0.42 1.16 16 20 C 0.10 2.36 2.83 44.97 0.13 2.49 16 21 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 22 N -0.84 -15.49 8.61 -168.46 -1.45 -16.94 16 23 H 0.06 1.27 7.68 -2.39 -0.02 1.25 16 24 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.05 1.37 8.14 -2.39 -0.02 1.36 16 27 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.07 1.72 7.93 -2.38 -0.02 1.70 16 30 H 0.07 1.55 8.00 -2.39 -0.02 1.53 16 31 H 0.08 2.19 7.79 -2.39 -0.02 2.17 16 32 H 0.04 1.37 6.70 -2.39 -0.02 1.36 16 33 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.00 0.22 7.58 -2.39 -0.02 0.20 16 35 H 0.01 0.50 7.19 -2.39 -0.02 0.49 16 36 H 0.27 16.04 8.31 -92.70 -0.77 15.27 16 37 H 0.06 1.59 6.65 -2.39 -0.02 1.57 16 38 H 0.04 0.87 8.14 -2.39 -0.02 0.86 16 39 H 0.35 6.06 9.04 -89.69 -0.81 5.25 16 40 H 0.35 4.97 8.98 -89.70 -0.81 4.16 16 Total: -1.00 -72.27 314.50 -1.75 -74.02 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -0.66 Total: 16.22 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: 3.77 Total: -18.64 kcal Atomic # 7 Polarization: -92.01 SS G_CDS: -5.21 Total: -97.23 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -1.53 Total: -20.52 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.88 Total: 46.16 kcal Total: -72.27 -1.75 -74.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385181338.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.335 kcal (2) G-P(sol) polarization free energy of solvation -72.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds