Wall clock time and date at job start Mon Mar 30 2020 04:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.52442 * 2 1 4 4 C 1.53116 * 109.52281 * 120.12420 * 2 1 3 5 5 C 1.53041 * 109.27851 * 177.62145 * 4 2 1 6 6 N 1.46847 * 109.52296 * 300.82259 * 5 4 2 7 7 C 1.46904 * 110.99826 * 185.83933 * 6 5 4 8 8 C 1.52999 * 109.47152 * 66.04527 * 7 6 5 9 9 O 1.42899 * 109.46889 * 64.99954 * 8 7 6 10 10 C 1.42905 * 113.99778 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.46972 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99963 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00270 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00302 * 179.97438 * 13 11 10 15 15 Si 1.86805 * 119.99832 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.47310 * 89.99428 * 15 13 11 17 17 H 1.48491 * 109.47296 * 209.99911 * 15 13 11 18 18 H 1.48502 * 109.46905 * 329.99956 * 15 13 11 19 19 C 1.46845 * 111.19610 * 61.74204 * 6 5 4 20 20 C 1.53039 * 109.52556 * 298.25443 * 19 6 5 21 21 H 1.08996 * 109.53479 * 299.22287 * 20 19 6 22 22 N 1.46893 * 109.50213 * 179.12276 * 20 19 6 23 23 H 1.09003 * 109.46738 * 299.87499 * 1 2 3 24 24 H 1.08997 * 109.47126 * 59.87316 * 1 2 3 25 25 H 1.08997 * 109.47134 * 179.87249 * 1 2 3 26 26 H 1.09002 * 109.50222 * 57.68288 * 4 2 1 27 27 H 1.09000 * 109.53631 * 297.58544 * 4 2 1 28 28 H 1.09004 * 109.46202 * 180.80750 * 5 4 2 29 29 H 1.08997 * 109.45170 * 60.83788 * 5 4 2 30 30 H 1.09004 * 109.46935 * 306.04634 * 7 6 5 31 31 H 1.08993 * 109.46751 * 186.04960 * 7 6 5 32 32 H 1.08997 * 109.47286 * 304.99937 * 8 7 6 33 33 H 1.08997 * 109.46848 * 185.00035 * 8 7 6 34 34 H 1.09000 * 109.47187 * 300.00233 * 10 9 8 35 35 H 1.09001 * 109.46558 * 60.00281 * 10 9 8 36 36 H 0.97002 * 119.99998 * 179.97438 * 14 13 11 37 37 H 1.09002 * 109.46381 * 58.27328 * 19 6 5 38 38 H 1.09004 * 109.45793 * 178.23785 * 19 6 5 39 39 H 1.00897 * 111.00519 * 60.19910 * 22 20 19 40 40 H 1.00900 * 110.99846 * 184.15224 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0417 -0.7243 1.2482 5 6 3.5709 -0.7731 1.2128 6 7 4.0116 -1.4767 0.0016 7 6 5.4686 -1.6642 0.0024 8 6 5.8600 -2.6129 1.1372 9 8 5.3122 -3.9084 0.8852 10 6 5.6211 -4.8756 1.8909 11 6 4.9972 -6.1977 1.5247 12 1 4.4220 -6.2899 0.6153 13 6 5.1598 -7.2892 2.3512 14 7 4.6149 -8.4428 2.0319 15 14 6.1529 -7.1291 3.9253 16 1 5.2546 -6.7320 5.0392 17 1 6.7898 -8.4322 4.2435 18 1 7.2038 -6.0956 3.7445 19 6 3.5721 -0.7735 -1.2104 20 6 2.0430 -0.7248 -1.2474 21 1 1.6464 -1.7398 -1.2674 22 7 1.6043 -0.0031 -2.4492 23 1 -0.3633 0.5119 0.8911 24 1 -0.3633 0.5158 -0.8888 25 1 -0.3633 -1.0276 -0.0023 26 1 1.6456 -1.7396 1.2678 27 1 1.7152 -0.1890 2.1398 28 1 3.9379 -1.3008 2.0932 29 1 3.9664 0.2426 1.2072 30 1 5.9587 -0.7016 0.1482 31 1 5.7805 -2.0901 -0.9512 32 1 5.4705 -2.2309 2.0808 33 1 6.9463 -2.6825 1.1941 34 1 6.7024 -4.9921 1.9630 35 1 5.2268 -4.5407 2.8503 36 1 4.7297 -9.2108 2.6133 37 1 3.9679 0.2421 -1.2047 38 1 3.9401 -1.3016 -2.0901 39 1 1.9307 -0.4623 -3.2862 40 1 0.6008 0.1015 -2.4621 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385181341.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:56 Heat of formation + Delta-G solvation = -76.107568 kcal Electronic energy + Delta-G solvation = -18086.279827 eV Core-core repulsion = 15320.446818 eV Total energy + Delta-G solvation = -2765.833008 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.48154 -38.60042 -36.32308 -34.81516 -33.83450 -31.42957 -29.86909 -29.52517 -27.23429 -24.07644 -23.92714 -23.39691 -21.80749 -20.52970 -19.02936 -17.52337 -17.38260 -16.80640 -16.44905 -16.15870 -15.98938 -15.51629 -15.47794 -14.77828 -14.50205 -14.15391 -14.05837 -13.77343 -13.43726 -13.26549 -13.07423 -12.79397 -12.68094 -12.45859 -12.41148 -12.03773 -11.81293 -11.65074 -11.39427 -11.23379 -11.12071 -10.91024 -10.27369 -9.65493 -9.14547 -8.36628 -6.44179 1.32712 1.36190 1.47128 2.29755 2.82207 2.95915 3.13399 3.64936 3.75974 3.84076 3.97471 4.16029 4.26302 4.30405 4.42032 4.43326 4.51882 4.56471 4.57658 4.64519 4.74538 4.81980 4.86441 4.91250 4.95451 5.01291 5.04095 5.12886 5.19572 5.31997 5.45412 5.47565 5.95128 6.09558 6.17568 6.31533 6.58806 6.60101 6.82014 7.20695 8.80857 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.030679 B = 0.004940 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.446907 B = 5667.010443 C = 5855.864002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 H 0.077 0.923 4 C -0.111 4.111 5 C 0.053 3.947 6 N -0.553 5.553 7 C 0.068 3.932 8 C 0.053 3.947 9 O -0.393 6.393 10 C 0.180 3.820 11 C -0.543 4.543 12 H 0.027 0.973 13 C 0.013 3.987 14 N -0.944 5.944 15 Si 0.957 3.043 16 H -0.260 1.260 17 H -0.272 1.272 18 H -0.245 1.245 19 C 0.070 3.930 20 C 0.100 3.900 21 H 0.021 0.979 22 N -0.843 5.843 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.044 0.956 26 H 0.048 0.952 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.010 0.990 35 H 0.006 0.994 36 H 0.273 0.727 37 H 0.044 0.956 38 H 0.065 0.935 39 H 0.346 0.654 40 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.099 21.110 -2.411 21.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.098 4.098 3 H 0.095 0.905 4 C -0.149 4.149 5 C -0.074 4.074 6 N -0.279 5.279 7 C -0.060 4.060 8 C -0.024 4.024 9 O -0.312 6.312 10 C 0.104 3.896 11 C -0.581 4.581 12 H 0.045 0.955 13 C -0.185 4.185 14 N -0.583 5.583 15 Si 0.778 3.222 16 H -0.184 1.184 17 H -0.197 1.197 18 H -0.169 1.169 19 C -0.058 4.058 20 C -0.011 4.011 21 H 0.039 0.961 22 N -0.376 5.376 23 H 0.085 0.915 24 H 0.087 0.913 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.028 0.972 35 H 0.024 0.976 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.084 0.916 39 H 0.159 0.841 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.027 21.030 -2.253 21.366 hybrid contribution 0.208 -0.803 0.358 0.904 sum -2.818 20.226 -1.896 20.510 Atomic orbital electron populations 1.21816 0.94131 1.01524 1.02779 1.21142 0.96450 0.99227 0.93029 0.90469 1.21641 0.94289 1.00532 0.98471 1.22158 0.96391 0.96216 0.92653 1.61656 1.12807 1.50729 1.02698 1.22050 0.87527 0.97363 0.99040 1.22719 0.97192 0.84230 0.98276 1.87968 1.76087 1.19481 1.47714 1.20278 0.94481 0.87090 0.87777 1.21161 1.33751 0.94532 1.08614 0.95505 1.25851 0.96526 0.93975 1.02162 1.70040 1.46074 1.02093 1.40143 0.85591 0.79545 0.78867 0.78209 1.18429 1.19741 1.16888 1.21936 0.95224 0.96473 0.92142 1.21212 0.94118 0.94549 0.91266 0.96069 1.58708 1.18565 1.56359 1.03934 0.91503 0.91287 0.93685 0.93291 0.89590 0.91545 0.93642 0.91024 0.90695 0.93348 0.92439 0.97193 0.97583 0.91829 0.93791 0.91636 0.84080 0.83508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 8.92 71.98 0.64 -1.88 16 2 C -0.08 -1.66 2.48 -10.72 -0.03 -1.68 16 3 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 4 C -0.11 -2.65 5.38 30.65 0.16 -2.49 16 5 C 0.05 1.38 5.30 86.33 0.46 1.84 16 6 N -0.55 -16.55 4.60 -896.34 -4.13 -20.68 16 7 C 0.07 1.95 5.34 86.30 0.46 2.41 16 8 C 0.05 1.83 6.00 71.98 0.43 2.26 16 9 O -0.39 -18.98 10.27 -148.98 -1.53 -20.51 16 10 C 0.18 9.29 4.76 71.24 0.34 9.63 16 11 C -0.54 -34.06 9.99 25.60 0.26 -33.80 16 12 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 13 C 0.01 0.75 5.47 84.65 0.46 1.22 16 14 N -0.94 -60.52 13.96 21.45 0.30 -60.22 16 15 Si 0.96 44.08 27.47 68.60 1.88 45.97 16 16 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 18 H -0.25 -10.40 6.54 99.48 0.65 -9.75 16 19 C 0.07 1.78 5.04 86.33 0.43 2.22 16 20 C 0.10 2.33 2.90 44.97 0.13 2.47 16 21 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 22 N -0.84 -15.33 9.24 -168.48 -1.56 -16.88 16 23 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.07 1.00 6.65 -2.39 -0.02 0.99 16 25 H 0.04 0.87 8.14 -2.39 -0.02 0.86 16 26 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.07 1.87 6.13 -2.38 -0.01 1.86 16 29 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.07 1.60 8.12 -2.38 -0.02 1.59 16 31 H 0.07 2.23 7.98 -2.39 -0.02 2.21 16 32 H 0.05 1.57 6.23 -2.39 -0.01 1.56 16 33 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.01 0.51 7.20 -2.39 -0.02 0.49 16 35 H 0.01 0.32 7.57 -2.39 -0.02 0.30 16 36 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 37 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.07 1.70 8.01 -2.38 -0.02 1.68 16 39 H 0.35 5.70 9.04 -89.70 -0.81 4.89 16 40 H 0.35 5.32 7.15 -89.69 -0.64 4.67 16 Total: -1.00 -71.89 311.61 -1.77 -73.66 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -0.49 Total: 16.47 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: 3.75 Total: -17.80 kcal Atomic # 7 Polarization: -92.40 SS G_CDS: -5.38 Total: -97.78 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -1.53 Total: -20.51 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.88 Total: 45.97 kcal Total: -71.89 -1.77 -73.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385181341.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.447 kcal (2) G-P(sol) polarization free energy of solvation -71.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds