Wall clock time and date at job start Mon Mar 30 2020 04:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.57453 * 2 1 4 4 C 1.53117 * 109.51995 * 120.15666 * 2 1 3 5 5 C 1.53041 * 109.27708 * 177.56056 * 4 2 1 6 6 N 1.46848 * 109.51872 * 300.81629 * 5 4 2 7 7 C 1.46905 * 110.99586 * 185.83988 * 6 5 4 8 8 C 1.52997 * 109.47150 * 66.04973 * 7 6 5 9 9 O 1.42898 * 109.47319 * 64.99949 * 8 7 6 10 10 C 1.42902 * 114.00186 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47205 * 179.97438 * 10 9 8 12 12 H 1.08008 * 120.00105 * 359.97438 * 11 10 9 13 13 C 1.37873 * 120.00129 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99722 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00218 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47019 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47128 * 119.99695 * 15 13 11 18 18 H 1.48494 * 109.47116 * 239.99833 * 15 13 11 19 19 C 1.46850 * 111.19931 * 61.74443 * 6 5 4 20 20 C 1.53031 * 109.52300 * 298.25753 * 19 6 5 21 21 H 1.09000 * 109.54027 * 179.13696 * 20 19 6 22 22 N 1.46906 * 109.50204 * 299.23834 * 20 19 6 23 23 H 1.09004 * 109.47097 * 299.84541 * 1 2 3 24 24 H 1.08998 * 109.47468 * 59.84449 * 1 2 3 25 25 H 1.09001 * 109.47563 * 179.84921 * 1 2 3 26 26 H 1.08999 * 109.50687 * 57.61537 * 4 2 1 27 27 H 1.09004 * 109.53628 * 297.51449 * 4 2 1 28 28 H 1.09002 * 109.45902 * 180.80447 * 5 4 2 29 29 H 1.08996 * 109.46339 * 60.83425 * 5 4 2 30 30 H 1.09001 * 109.47063 * 306.04369 * 7 6 5 31 31 H 1.09004 * 109.46681 * 186.04994 * 7 6 5 32 32 H 1.09002 * 109.47153 * 304.99641 * 8 7 6 33 33 H 1.09001 * 109.46832 * 184.99832 * 8 7 6 34 34 H 1.09001 * 109.46918 * 299.99649 * 10 9 8 35 35 H 1.08999 * 109.46857 * 59.99535 * 10 9 8 36 36 H 0.96998 * 119.99585 * 180.02562 * 14 13 11 37 37 H 1.09000 * 109.46048 * 58.26724 * 19 6 5 38 38 H 1.09000 * 109.46252 * 178.24098 * 19 6 5 39 39 H 1.00897 * 110.99723 * 299.80010 * 22 20 19 40 40 H 1.00894 * 111.00150 * 63.75925 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0416 -0.7250 1.2478 5 6 3.5708 -0.7751 1.2117 6 7 4.0101 -1.4790 0.0001 7 6 5.4670 -1.6679 0.0002 8 6 5.8582 -2.6171 1.1346 9 8 5.3091 -3.9121 0.8828 10 6 5.6166 -4.8795 1.8887 11 6 4.9904 -6.2006 1.5232 12 1 4.4147 -6.2923 0.6140 13 6 5.1515 -7.2920 2.3501 14 7 5.8520 -7.1803 3.4575 15 14 4.3747 -8.9295 1.8975 16 1 3.6433 -8.7920 0.6124 17 1 5.4359 -9.9585 1.7560 18 1 3.4268 -9.3394 2.9645 19 6 3.5708 -0.7753 -1.2116 20 6 2.0417 -0.7251 -1.2478 21 1 1.7155 -0.1895 -2.1393 22 7 1.5066 -2.0930 -1.2741 23 1 -0.3633 0.5114 0.8914 24 1 -0.3634 0.5162 -0.8885 25 1 -0.3634 -1.0276 -0.0027 26 1 1.6446 -1.7399 1.2676 27 1 1.7161 -0.1895 2.1397 28 1 3.9377 -1.3033 2.0918 29 1 3.9674 0.2401 1.2060 30 1 5.9581 -0.7057 0.1458 31 1 5.7781 -2.0939 -0.9537 32 1 5.4695 -2.2349 2.0785 33 1 6.9444 -2.6877 1.1909 34 1 6.6978 -4.9971 1.9611 35 1 5.2225 -4.5439 2.8479 36 1 5.9656 -7.9482 4.0391 37 1 3.9674 0.2399 -1.2060 38 1 3.9377 -1.3036 -2.0916 39 1 1.8303 -2.5923 -2.0889 40 1 1.7423 -2.5899 -0.4282 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385181342.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:00 Heat of formation + Delta-G solvation = -56.365957 kcal Electronic energy + Delta-G solvation = -18296.698474 eV Core-core repulsion = 15531.721526 eV Total energy + Delta-G solvation = -2764.976948 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.58396 -36.80889 -34.82245 -32.64120 -32.46080 -29.79309 -28.92499 -27.08396 -25.84966 -23.15241 -22.45894 -22.22084 -20.77710 -18.89136 -16.61555 -16.34554 -15.64280 -15.48883 -15.01721 -14.56820 -14.34859 -14.14463 -14.00439 -13.54772 -13.04889 -12.90303 -12.48631 -12.25234 -12.03665 -11.93713 -11.58215 -11.48776 -11.16541 -10.79079 -10.76498 -10.64794 -10.54186 -10.30290 -10.10304 -9.91301 -9.04155 -8.77023 -8.48680 -8.12557 -8.03653 -6.07632 -4.08515 3.31637 3.38115 3.44996 3.97148 4.38253 4.69349 4.76075 4.86272 4.89407 5.04497 5.24037 5.29153 5.41044 5.44727 5.46944 5.57413 5.62389 5.71395 5.74950 5.78353 5.85954 5.94041 6.04206 6.05243 6.15744 6.23156 6.29291 6.33862 6.53902 7.13449 7.22120 7.25588 7.46051 7.47006 7.76758 7.84313 8.20352 8.64990 9.06366 9.56459 11.04135 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.026717 B = 0.005394 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.756592 B = 5189.805083 C = 5645.449510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 H 0.062 0.938 4 C -0.114 4.114 5 C 0.052 3.948 6 N -0.522 5.522 7 C 0.063 3.937 8 C 0.066 3.934 9 O -0.379 6.379 10 C 0.194 3.806 11 C -0.509 4.509 12 H 0.067 0.933 13 C 0.055 3.945 14 N -0.900 5.900 15 Si 0.906 3.094 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.283 1.283 19 C 0.020 3.980 20 C 0.101 3.899 21 H 0.076 0.924 22 N -0.836 5.836 23 H 0.044 0.956 24 H 0.047 0.953 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.025 0.975 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.036 0.964 33 H 0.038 0.962 34 H 0.001 0.999 35 H 0.002 0.998 36 H 0.262 0.738 37 H 0.028 0.972 38 H 0.072 0.928 39 H 0.337 0.663 40 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.636 15.519 -6.696 17.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.105 4.105 3 H 0.081 0.919 4 C -0.152 4.152 5 C -0.076 4.076 6 N -0.247 5.247 7 C -0.065 4.065 8 C -0.012 4.012 9 O -0.299 6.299 10 C 0.120 3.880 11 C -0.547 4.547 12 H 0.085 0.915 13 C -0.146 4.146 14 N -0.540 5.540 15 Si 0.734 3.266 16 H -0.194 1.194 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.110 4.110 20 C -0.012 4.012 21 H 0.094 0.906 22 N -0.366 5.366 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.043 0.957 30 H 0.055 0.945 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.019 0.981 35 H 0.020 0.980 36 H 0.072 0.928 37 H 0.046 0.954 38 H 0.090 0.910 39 H 0.148 0.852 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.632 15.244 -6.735 17.937 hybrid contribution 1.459 -0.262 0.257 1.504 sum -5.173 14.982 -6.478 17.123 Atomic orbital electron populations 1.21676 0.94509 1.02835 1.00289 1.21192 0.96432 0.98163 0.94691 0.91908 1.21664 0.94549 1.01865 0.97123 1.22177 0.95880 0.95691 0.93864 1.61734 1.12728 1.48840 1.01353 1.22114 0.87064 0.96795 1.00537 1.22260 0.96167 0.86713 0.96040 1.87935 1.75329 1.17471 1.49149 1.20175 0.94942 0.86536 0.86370 1.21088 1.32436 0.93265 1.07910 0.91503 1.24946 0.95500 0.99295 0.94821 1.69978 1.40493 1.30988 1.12543 0.86303 0.78945 0.82781 0.78609 1.19448 1.20934 1.20874 1.22968 0.98049 0.96445 0.93580 1.21434 0.90260 0.91796 0.97692 0.90573 1.59098 1.65049 1.03341 1.09118 0.93696 0.93366 0.91160 0.90304 0.91730 0.90106 0.95657 0.94543 0.90306 0.94567 0.94422 0.98105 0.97972 0.92803 0.95414 0.90959 0.85166 0.82902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.02 37.16 0.34 -1.08 16 2 C -0.09 -0.94 2.61 -90.50 -0.24 -1.18 16 3 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.11 -1.40 5.05 -26.65 -0.13 -1.54 16 5 C 0.05 0.70 5.30 -3.83 -0.02 0.68 16 6 N -0.52 -7.60 4.05 -234.66 -0.95 -8.56 16 7 C 0.06 0.95 5.34 -3.82 -0.02 0.93 16 8 C 0.07 1.24 6.00 37.16 0.22 1.46 16 9 O -0.38 -9.18 10.27 -35.23 -0.36 -9.55 16 10 C 0.19 5.38 5.69 36.00 0.20 5.59 16 11 C -0.51 -15.11 9.43 -34.44 -0.32 -15.44 16 12 H 0.07 1.98 7.81 -52.48 -0.41 1.57 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 15 Si 0.91 22.07 29.54 -169.99 -5.02 17.05 16 16 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 19 C 0.02 0.24 5.09 -3.84 -0.02 0.22 16 20 C 0.10 1.15 3.18 -67.63 -0.22 0.94 16 21 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 22 N -0.84 -10.64 8.36 -4.60 -0.04 -10.68 16 23 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.83 7.54 -51.93 -0.39 0.43 16 26 H 0.08 1.11 6.71 -51.93 -0.35 0.76 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.08 1.22 6.13 -51.93 -0.32 0.90 16 29 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.04 0.48 8.12 -51.93 -0.42 0.05 16 31 H 0.08 1.20 7.98 -51.93 -0.41 0.79 16 32 H 0.04 0.66 6.23 -51.93 -0.32 0.34 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 35 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.88 8.01 -51.93 -0.42 0.47 16 39 H 0.34 4.13 9.04 -39.29 -0.36 3.77 16 40 H 0.36 5.28 6.63 -39.29 -0.26 5.02 16 LS Contribution 312.95 15.07 4.72 4.72 Total: -1.00 -30.50 312.95 -8.25 -38.75 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -7.02 Total: 2.65 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -0.31 Total: -7.92 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: -0.25 Total: -45.70 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -0.36 Total: -9.55 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.50 -8.25 -38.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385181342.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.615 kcal (2) G-P(sol) polarization free energy of solvation -30.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds