Wall clock time and date at job start Mon Mar 30 2020 04:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.57453 * 2 1 4 4 C 1.53117 * 109.51995 * 120.15666 * 2 1 3 5 5 C 1.53041 * 109.27708 * 177.56056 * 4 2 1 6 6 N 1.46848 * 109.51872 * 300.81629 * 5 4 2 7 7 C 1.46905 * 110.99586 * 185.83988 * 6 5 4 8 8 C 1.52997 * 109.47150 * 66.04973 * 7 6 5 9 9 O 1.42898 * 109.47319 * 64.99949 * 8 7 6 10 10 C 1.42902 * 114.00186 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47205 * 179.97438 * 10 9 8 12 12 H 1.08008 * 120.00105 * 359.97438 * 11 10 9 13 13 C 1.37873 * 120.00129 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99722 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00218 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47019 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47128 * 119.99695 * 15 13 11 18 18 H 1.48494 * 109.47116 * 239.99833 * 15 13 11 19 19 C 1.46850 * 111.19931 * 61.74443 * 6 5 4 20 20 C 1.53031 * 109.52300 * 298.25753 * 19 6 5 21 21 H 1.09000 * 109.54027 * 179.13696 * 20 19 6 22 22 N 1.46906 * 109.50204 * 299.23834 * 20 19 6 23 23 H 1.09004 * 109.47097 * 299.84541 * 1 2 3 24 24 H 1.08998 * 109.47468 * 59.84449 * 1 2 3 25 25 H 1.09001 * 109.47563 * 179.84921 * 1 2 3 26 26 H 1.08999 * 109.50687 * 57.61537 * 4 2 1 27 27 H 1.09004 * 109.53628 * 297.51449 * 4 2 1 28 28 H 1.09002 * 109.45902 * 180.80447 * 5 4 2 29 29 H 1.08996 * 109.46339 * 60.83425 * 5 4 2 30 30 H 1.09001 * 109.47063 * 306.04369 * 7 6 5 31 31 H 1.09004 * 109.46681 * 186.04994 * 7 6 5 32 32 H 1.09002 * 109.47153 * 304.99641 * 8 7 6 33 33 H 1.09001 * 109.46832 * 184.99832 * 8 7 6 34 34 H 1.09001 * 109.46918 * 299.99649 * 10 9 8 35 35 H 1.08999 * 109.46857 * 59.99535 * 10 9 8 36 36 H 0.96998 * 119.99585 * 180.02562 * 14 13 11 37 37 H 1.09000 * 109.46048 * 58.26724 * 19 6 5 38 38 H 1.09000 * 109.46252 * 178.24098 * 19 6 5 39 39 H 1.00897 * 110.99723 * 299.80010 * 22 20 19 40 40 H 1.00894 * 111.00150 * 63.75925 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0416 -0.7250 1.2478 5 6 3.5708 -0.7751 1.2117 6 7 4.0101 -1.4790 0.0001 7 6 5.4670 -1.6679 0.0002 8 6 5.8582 -2.6171 1.1346 9 8 5.3091 -3.9121 0.8828 10 6 5.6166 -4.8795 1.8887 11 6 4.9904 -6.2006 1.5232 12 1 4.4147 -6.2923 0.6140 13 6 5.1515 -7.2920 2.3501 14 7 5.8520 -7.1803 3.4575 15 14 4.3747 -8.9295 1.8975 16 1 3.6433 -8.7920 0.6124 17 1 5.4359 -9.9585 1.7560 18 1 3.4268 -9.3394 2.9645 19 6 3.5708 -0.7753 -1.2116 20 6 2.0417 -0.7251 -1.2478 21 1 1.7155 -0.1895 -2.1393 22 7 1.5066 -2.0930 -1.2741 23 1 -0.3633 0.5114 0.8914 24 1 -0.3634 0.5162 -0.8885 25 1 -0.3634 -1.0276 -0.0027 26 1 1.6446 -1.7399 1.2676 27 1 1.7161 -0.1895 2.1397 28 1 3.9377 -1.3033 2.0918 29 1 3.9674 0.2401 1.2060 30 1 5.9581 -0.7057 0.1458 31 1 5.7781 -2.0939 -0.9537 32 1 5.4695 -2.2349 2.0785 33 1 6.9444 -2.6877 1.1909 34 1 6.6978 -4.9971 1.9611 35 1 5.2225 -4.5439 2.8479 36 1 5.9656 -7.9482 4.0391 37 1 3.9674 0.2399 -1.2060 38 1 3.9377 -1.3036 -2.0916 39 1 1.8303 -2.5923 -2.0889 40 1 1.7423 -2.5899 -0.4282 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385181342.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:59 Heat of formation + Delta-G solvation = -78.448697 kcal Electronic energy + Delta-G solvation = -18297.656053 eV Core-core repulsion = 15531.721526 eV Total energy + Delta-G solvation = -2765.934527 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.61966 -38.53575 -36.08751 -34.81866 -33.42740 -31.14617 -30.00676 -29.01405 -27.07475 -24.48920 -24.23805 -23.42227 -22.00409 -19.83985 -18.61852 -17.70896 -17.37030 -16.80521 -16.40880 -16.02596 -15.67404 -15.61057 -15.16733 -14.74929 -14.60609 -13.96261 -13.73917 -13.66346 -13.44208 -13.08363 -12.87001 -12.82944 -12.67144 -12.52269 -12.45488 -12.20266 -11.85698 -11.57861 -11.29259 -11.21313 -11.04297 -10.83860 -10.17266 -9.50362 -9.10460 -8.31374 -6.42997 1.40246 1.41580 1.56494 2.35575 2.88324 3.02644 3.23124 3.78367 3.80347 3.91722 4.04331 4.12707 4.24967 4.36130 4.44555 4.45574 4.56955 4.59047 4.67212 4.75523 4.82412 4.85822 4.88054 4.90363 4.96176 5.09628 5.19063 5.24392 5.25300 5.40260 5.56651 5.63831 5.98081 6.12429 6.19150 6.45333 6.57613 6.68945 6.86715 7.29366 8.81332 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.026717 B = 0.005394 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.756592 B = 5189.805083 C = 5645.449510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.081 4.081 3 H 0.078 0.922 4 C -0.111 4.111 5 C 0.053 3.947 6 N -0.544 5.544 7 C 0.072 3.928 8 C 0.057 3.943 9 O -0.392 6.392 10 C 0.210 3.790 11 C -0.542 4.542 12 H 0.060 0.940 13 C 0.006 3.994 14 N -0.932 5.932 15 Si 0.982 3.018 16 H -0.264 1.264 17 H -0.271 1.271 18 H -0.272 1.272 19 C 0.024 3.976 20 C 0.101 3.899 21 H 0.092 0.908 22 N -0.838 5.838 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.037 0.963 33 H 0.044 0.956 34 H -0.018 1.018 35 H -0.019 1.019 36 H 0.270 0.730 37 H 0.043 0.957 38 H 0.070 0.930 39 H 0.337 0.663 40 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.337 16.217 -7.644 19.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.100 4.100 3 H 0.097 0.903 4 C -0.149 4.149 5 C -0.074 4.074 6 N -0.269 5.269 7 C -0.056 4.056 8 C -0.020 4.020 9 O -0.311 6.311 10 C 0.135 3.865 11 C -0.579 4.579 12 H 0.078 0.922 13 C -0.192 4.192 14 N -0.572 5.572 15 Si 0.805 3.195 16 H -0.189 1.189 17 H -0.196 1.196 18 H -0.197 1.197 19 C -0.106 4.106 20 C -0.011 4.011 21 H 0.110 0.890 22 N -0.367 5.367 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.055 0.945 33 H 0.062 0.938 34 H -0.001 1.001 35 H -0.002 1.002 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.089 0.911 39 H 0.149 0.851 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.331 15.976 -7.698 19.189 hybrid contribution 1.706 -0.391 0.572 1.841 sum -5.625 15.584 -7.126 18.036 Atomic orbital electron populations 1.21620 0.94051 1.01955 1.01221 1.21183 0.96737 0.98550 0.93523 0.90338 1.21625 0.93683 1.00931 0.98617 1.22140 0.96629 0.96027 0.92629 1.61670 1.12300 1.50310 1.02616 1.22004 0.88033 0.96915 0.98655 1.22597 0.96482 0.84877 0.98051 1.87892 1.75920 1.19253 1.48066 1.19771 0.93292 0.87202 0.86232 1.21384 1.33501 0.94741 1.08293 0.92159 1.25942 0.95545 1.03331 0.94369 1.70081 1.41104 1.32589 1.13417 0.85153 0.78287 0.77423 0.78654 1.18852 1.19642 1.19701 1.22969 0.98469 0.96875 0.92274 1.21538 0.89801 0.91170 0.98632 0.88994 1.59122 1.65228 1.03943 1.08388 0.92795 0.92413 0.92917 0.92699 0.90514 0.92446 0.93903 0.91589 0.90461 0.94453 0.93798 1.00054 1.00168 0.92119 0.93875 0.91110 0.85070 0.84450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.02 71.98 0.65 -1.84 16 2 C -0.08 -1.61 2.61 -10.71 -0.03 -1.64 16 3 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 4 C -0.11 -2.62 5.05 30.65 0.15 -2.47 16 5 C 0.05 1.39 5.30 86.33 0.46 1.85 16 6 N -0.54 -15.31 4.05 -896.34 -3.63 -18.94 16 7 C 0.07 2.08 5.34 86.30 0.46 2.54 16 8 C 0.06 2.16 6.00 71.98 0.43 2.59 16 9 O -0.39 -19.47 10.27 -148.98 -1.53 -21.00 16 10 C 0.21 12.08 5.69 71.24 0.41 12.49 16 11 C -0.54 -32.86 9.43 25.60 0.24 -32.62 16 12 H 0.06 3.65 7.81 -2.91 -0.02 3.62 16 13 C 0.01 0.37 5.46 84.65 0.46 0.83 16 14 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16 15 Si 0.98 45.12 29.54 68.60 2.03 47.14 16 16 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 19 C 0.02 0.53 5.09 86.32 0.44 0.97 16 20 C 0.10 2.12 3.18 44.96 0.14 2.26 16 21 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 22 N -0.84 -20.84 8.36 -168.46 -1.41 -22.24 16 23 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.05 1.19 7.54 -2.39 -0.02 1.17 16 26 H 0.05 1.57 6.71 -2.39 -0.02 1.55 16 27 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.06 1.75 6.13 -2.39 -0.01 1.73 16 29 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 1.55 8.12 -2.39 -0.02 1.53 16 31 H 0.08 2.27 7.98 -2.39 -0.02 2.25 16 32 H 0.04 1.40 6.23 -2.39 -0.01 1.38 16 33 H 0.04 1.58 8.14 -2.39 -0.02 1.57 16 34 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 35 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 36 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 37 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.07 1.60 8.01 -2.39 -0.02 1.58 16 39 H 0.34 8.10 9.04 -89.70 -0.81 7.29 16 40 H 0.34 10.28 6.63 -89.70 -0.59 9.68 16 Total: -1.00 -65.63 312.95 -0.84 -66.47 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -0.39 Total: 20.17 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: 3.82 Total: -15.04 kcal Atomic # 7 Polarization: -92.99 SS G_CDS: -4.76 Total: -97.74 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -1.53 Total: -21.00 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -65.63 -0.84 -66.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385181342.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.981 kcal (2) G-P(sol) polarization free energy of solvation -65.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds