Wall clock time and date at job start Mon Mar 30 2020 04:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.50370 * 2 1 4 4 C 1.53040 * 109.53560 * 239.89878 * 2 1 3 5 5 N 1.46839 * 109.52544 * 180.86134 * 4 2 1 6 6 C 1.46901 * 111.00234 * 185.84103 * 5 4 2 7 7 C 1.53000 * 109.46769 * 301.83737 * 6 5 4 8 8 O 1.42899 * 109.47405 * 64.99669 * 7 6 5 9 9 C 1.42901 * 113.99649 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.46545 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00589 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99844 * 180.02562 * 10 9 8 13 13 N 1.31502 * 119.99832 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99825 * 180.02562 * 12 10 9 15 15 H 1.48509 * 109.47160 * 60.00527 * 14 12 10 16 16 H 1.48501 * 109.46721 * 180.02562 * 14 12 10 17 17 H 1.48490 * 109.47451 * 300.00244 * 14 12 10 18 18 C 1.46846 * 111.20112 * 61.74326 * 5 4 2 19 19 C 1.53041 * 109.52003 * 298.26039 * 18 5 4 20 20 C 1.53120 * 109.28215 * 59.17728 * 19 18 5 21 21 H 1.08994 * 109.51809 * 62.24931 * 20 19 18 22 22 N 1.46902 * 109.52351 * 182.43979 * 20 19 18 23 23 H 1.09008 * 109.46748 * 299.92243 * 1 2 3 24 24 H 1.08992 * 109.47084 * 59.92032 * 1 2 3 25 25 H 1.09001 * 109.47085 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46004 * 60.84155 * 4 2 1 27 27 H 1.09001 * 109.46412 * 300.87813 * 4 2 1 28 28 H 1.09002 * 109.47401 * 181.83444 * 6 5 4 29 29 H 1.09001 * 109.46874 * 61.83457 * 6 5 4 30 30 H 1.09002 * 109.46642 * 184.99944 * 7 6 5 31 31 H 1.09002 * 109.47069 * 304.99474 * 7 6 5 32 32 H 1.08990 * 109.47463 * 299.99806 * 9 8 7 33 33 H 1.08992 * 109.47069 * 60.00902 * 9 8 7 34 34 H 0.97004 * 120.00403 * 179.97438 * 13 12 10 35 35 H 1.09002 * 109.46476 * 58.27156 * 18 5 4 36 36 H 1.09003 * 109.46821 * 178.25438 * 18 5 4 37 37 H 1.09001 * 109.50321 * 179.12207 * 19 18 5 38 38 H 1.08999 * 109.50410 * 299.19360 * 19 18 5 39 39 H 1.00895 * 110.99974 * 299.99841 * 22 20 19 40 40 H 1.00899 * 111.00061 * 63.95142 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0417 -0.7234 -1.2478 5 7 3.5100 -0.7413 -1.2372 6 6 4.0387 -1.3049 -2.4865 7 6 3.4951 -2.7224 -2.6766 8 8 2.0784 -2.6693 -2.8556 9 6 1.4680 -3.9477 -3.0432 10 6 -0.0184 -3.7733 -3.2202 11 1 -0.4534 -2.7852 -3.1926 12 6 -0.8232 -4.8755 -3.4173 13 7 -0.2936 -6.0787 -3.4504 14 14 -2.6655 -4.6593 -3.6375 15 1 -2.9255 -3.8081 -4.8263 16 1 -3.3001 -5.9879 -3.8311 17 1 -3.2356 -4.0103 -2.4297 18 6 4.0238 -1.4717 -0.0715 19 6 3.5712 -0.7707 1.2114 20 6 2.0412 -0.7234 1.2490 21 1 1.6458 -1.7389 1.2693 22 7 1.6017 0.0000 2.4497 23 1 -0.3633 0.5127 0.8908 24 1 -0.3633 0.5150 -0.8892 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6913 -0.2025 -2.1388 27 1 1.6661 -1.7466 -1.2541 28 1 5.1272 -1.3365 -2.4389 29 1 3.7297 -0.6816 -3.3256 30 1 3.9558 -3.1732 -3.5557 31 1 3.7280 -3.3219 -1.7966 32 1 1.8865 -4.4235 -3.9299 33 1 1.6587 -4.5728 -2.1710 34 1 -0.8598 -6.8542 -3.5887 35 1 3.6389 -2.4914 -0.0832 36 1 5.1129 -1.4942 -0.1080 37 1 3.9396 -1.3218 2.0767 38 1 3.9678 0.2444 1.2308 39 1 1.9315 -0.4557 3.2873 40 1 1.9000 0.9634 2.4209 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385182560.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:45 Heat of formation + Delta-G solvation = -56.568154 kcal Electronic energy + Delta-G solvation = -18724.457794 eV Core-core repulsion = 15959.472078 eV Total energy + Delta-G solvation = -2764.985716 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.42710 -36.91545 -34.89206 -32.69977 -32.20812 -30.57299 -28.09552 -26.87469 -25.60850 -23.19700 -22.36523 -22.05214 -20.58020 -19.45467 -16.45892 -15.93119 -15.68243 -15.59211 -15.13469 -14.78613 -14.38746 -14.00769 -13.78909 -13.61255 -12.71701 -12.66909 -12.19692 -12.10335 -11.89844 -11.72641 -11.43526 -11.10850 -10.99728 -10.93247 -10.84670 -10.65986 -10.52196 -10.30933 -10.10824 -9.93206 -9.14646 -8.83734 -8.57181 -8.24423 -7.72505 -6.12991 -4.15049 3.31233 3.34058 3.37801 4.21082 4.34290 4.60840 4.85613 4.90655 5.02875 5.23708 5.24804 5.41060 5.54738 5.60545 5.66580 5.74882 5.83915 5.86150 5.95169 6.03745 6.07450 6.10726 6.25233 6.27242 6.36147 6.49031 6.60029 6.72892 6.92739 7.06315 7.20044 7.37593 7.40821 7.48622 7.51479 7.76332 8.11742 8.51287 8.97398 9.50069 10.98476 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.022475 B = 0.007010 C = 0.005894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.515025 B = 3993.441389 C = 4749.627333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.078 4.078 3 H 0.064 0.936 4 C 0.052 3.948 5 N -0.536 5.536 6 C 0.059 3.941 7 C 0.023 3.977 8 O -0.384 6.384 9 C 0.193 3.807 10 C -0.514 4.514 11 H 0.066 0.934 12 C 0.057 3.943 13 N -0.899 5.899 14 Si 0.906 3.094 15 H -0.274 1.274 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.054 3.946 19 C -0.146 4.146 20 C 0.092 3.908 21 H 0.080 0.920 22 N -0.841 5.841 23 H 0.060 0.940 24 H 0.048 0.952 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.039 0.961 31 H 0.036 0.964 32 H 0.003 0.997 33 H 0.002 0.998 34 H 0.264 0.736 35 H 0.038 0.962 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.336 0.664 40 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.930 10.321 8.205 15.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.097 4.097 3 H 0.082 0.918 4 C -0.075 4.075 5 N -0.260 5.260 6 C -0.069 4.069 7 C -0.056 4.056 8 O -0.304 6.304 9 C 0.119 3.881 10 C -0.552 4.552 11 H 0.084 0.916 12 C -0.144 4.144 13 N -0.538 5.538 14 Si 0.733 3.267 15 H -0.200 1.200 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.075 4.075 19 C -0.185 4.185 20 C -0.019 4.019 21 H 0.098 0.902 22 N -0.368 5.368 23 H 0.079 0.921 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.092 0.908 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.021 0.979 33 H 0.020 0.980 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.148 0.852 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.174 10.617 7.978 15.094 hybrid contribution 0.120 -1.163 -0.075 1.172 sum 7.294 9.454 7.902 14.319 Atomic orbital electron populations 1.21657 0.94367 1.02384 1.01054 1.21169 0.96071 0.98951 0.93496 0.91806 1.22482 0.85711 1.02654 0.96696 1.62189 1.09861 1.52401 1.01503 1.22245 0.98502 0.93346 0.92811 1.23006 0.85692 0.97803 0.99096 1.87977 1.16551 1.33227 1.92692 1.20185 0.93163 0.79930 0.94842 1.20992 0.90798 0.93833 1.49569 0.91557 1.24940 0.99444 0.94826 0.95175 1.69947 1.36016 0.98076 1.49760 0.86428 0.84075 0.77239 0.78974 1.19983 1.21173 1.19901 1.22000 0.99083 0.95876 0.90536 1.22401 0.97963 1.01072 0.97106 1.21588 0.91694 0.98353 0.90287 0.90229 1.58918 1.67606 1.06232 1.04080 0.92122 0.93298 0.92447 0.90835 0.89786 0.90422 0.90112 0.94251 0.94603 0.97900 0.98035 0.92604 0.94392 0.91555 0.92245 0.91666 0.85246 0.85232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.07 37.16 0.34 -1.75 16 2 C -0.08 -1.14 2.51 -90.54 -0.23 -1.37 16 3 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 4 C 0.05 0.89 3.51 -3.84 -0.01 0.88 16 5 N -0.54 -8.19 4.86 -234.67 -1.14 -9.33 16 6 C 0.06 0.90 5.93 -3.82 -0.02 0.87 16 7 C 0.02 0.42 5.75 37.16 0.21 0.64 16 8 O -0.38 -8.84 6.77 -35.23 -0.24 -9.08 16 9 C 0.19 5.21 5.69 36.01 0.20 5.42 16 10 C -0.51 -14.88 9.43 -34.44 -0.32 -15.20 16 11 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.90 -26.88 13.28 55.43 0.74 -26.14 16 14 Si 0.91 21.84 29.54 -169.99 -5.02 16.82 16 15 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 18 C 0.05 0.74 5.06 -3.83 -0.02 0.72 16 19 C -0.15 -1.75 5.67 -26.65 -0.15 -1.90 16 20 C 0.09 1.23 2.74 -67.59 -0.18 1.04 16 21 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 22 N -0.84 -9.36 8.61 -4.56 -0.04 -9.40 16 23 H 0.06 0.86 7.68 -51.92 -0.40 0.46 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.07 1.34 8.12 -51.93 -0.42 0.92 16 27 H 0.08 1.74 5.58 -51.93 -0.29 1.45 16 28 H 0.08 0.98 8.06 -51.93 -0.42 0.56 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.04 0.66 6.46 -51.93 -0.34 0.32 16 32 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 33 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 35 H 0.04 0.59 6.65 -51.93 -0.35 0.25 16 36 H 0.07 0.81 8.06 -51.93 -0.42 0.39 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.34 3.19 9.04 -39.29 -0.36 2.83 16 40 H 0.34 3.31 8.98 -39.29 -0.35 2.96 16 LS Contribution 311.37 15.07 4.69 4.69 Total: -1.00 -29.83 311.37 -8.40 -38.24 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -7.11 Total: 3.29 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -0.29 Total: -9.09 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: -0.44 Total: -44.87 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -0.24 Total: -9.08 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.83 -8.40 -38.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385182560.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.329 kcal (2) G-P(sol) polarization free energy of solvation -29.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds