Wall clock time and date at job start Mon Mar 30 2020 04:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.50370 * 2 1 4 4 C 1.53040 * 109.53560 * 239.89878 * 2 1 3 5 5 N 1.46839 * 109.52544 * 180.86134 * 4 2 1 6 6 C 1.46901 * 111.00234 * 185.84103 * 5 4 2 7 7 C 1.53000 * 109.46769 * 301.83737 * 6 5 4 8 8 O 1.42899 * 109.47405 * 64.99669 * 7 6 5 9 9 C 1.42901 * 113.99649 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.46545 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00589 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99844 * 180.02562 * 10 9 8 13 13 N 1.31502 * 119.99832 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99825 * 180.02562 * 12 10 9 15 15 H 1.48509 * 109.47160 * 60.00527 * 14 12 10 16 16 H 1.48501 * 109.46721 * 180.02562 * 14 12 10 17 17 H 1.48490 * 109.47451 * 300.00244 * 14 12 10 18 18 C 1.46846 * 111.20112 * 61.74326 * 5 4 2 19 19 C 1.53041 * 109.52003 * 298.26039 * 18 5 4 20 20 C 1.53120 * 109.28215 * 59.17728 * 19 18 5 21 21 H 1.08994 * 109.51809 * 62.24931 * 20 19 18 22 22 N 1.46902 * 109.52351 * 182.43979 * 20 19 18 23 23 H 1.09008 * 109.46748 * 299.92243 * 1 2 3 24 24 H 1.08992 * 109.47084 * 59.92032 * 1 2 3 25 25 H 1.09001 * 109.47085 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46004 * 60.84155 * 4 2 1 27 27 H 1.09001 * 109.46412 * 300.87813 * 4 2 1 28 28 H 1.09002 * 109.47401 * 181.83444 * 6 5 4 29 29 H 1.09001 * 109.46874 * 61.83457 * 6 5 4 30 30 H 1.09002 * 109.46642 * 184.99944 * 7 6 5 31 31 H 1.09002 * 109.47069 * 304.99474 * 7 6 5 32 32 H 1.08990 * 109.47463 * 299.99806 * 9 8 7 33 33 H 1.08992 * 109.47069 * 60.00902 * 9 8 7 34 34 H 0.97004 * 120.00403 * 179.97438 * 13 12 10 35 35 H 1.09002 * 109.46476 * 58.27156 * 18 5 4 36 36 H 1.09003 * 109.46821 * 178.25438 * 18 5 4 37 37 H 1.09001 * 109.50321 * 179.12207 * 19 18 5 38 38 H 1.08999 * 109.50410 * 299.19360 * 19 18 5 39 39 H 1.00895 * 110.99974 * 299.99841 * 22 20 19 40 40 H 1.00899 * 111.00061 * 63.95142 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0417 -0.7234 -1.2478 5 7 3.5100 -0.7413 -1.2372 6 6 4.0387 -1.3049 -2.4865 7 6 3.4951 -2.7224 -2.6766 8 8 2.0784 -2.6693 -2.8556 9 6 1.4680 -3.9477 -3.0432 10 6 -0.0184 -3.7733 -3.2202 11 1 -0.4534 -2.7852 -3.1926 12 6 -0.8232 -4.8755 -3.4173 13 7 -0.2936 -6.0787 -3.4504 14 14 -2.6655 -4.6593 -3.6375 15 1 -2.9255 -3.8081 -4.8263 16 1 -3.3001 -5.9879 -3.8311 17 1 -3.2356 -4.0103 -2.4297 18 6 4.0238 -1.4717 -0.0715 19 6 3.5712 -0.7707 1.2114 20 6 2.0412 -0.7234 1.2490 21 1 1.6458 -1.7389 1.2693 22 7 1.6017 0.0000 2.4497 23 1 -0.3633 0.5127 0.8908 24 1 -0.3633 0.5150 -0.8892 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6913 -0.2025 -2.1388 27 1 1.6661 -1.7466 -1.2541 28 1 5.1272 -1.3365 -2.4389 29 1 3.7297 -0.6816 -3.3256 30 1 3.9558 -3.1732 -3.5557 31 1 3.7280 -3.3219 -1.7966 32 1 1.8865 -4.4235 -3.9299 33 1 1.6587 -4.5728 -2.1710 34 1 -0.8598 -6.8542 -3.5887 35 1 3.6389 -2.4914 -0.0832 36 1 5.1129 -1.4942 -0.1080 37 1 3.9396 -1.3218 2.0767 38 1 3.9678 0.2444 1.2308 39 1 1.9315 -0.4557 3.2873 40 1 1.9000 0.9634 2.4209 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385182560.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:44 Heat of formation + Delta-G solvation = -78.780869 kcal Electronic energy + Delta-G solvation = -18725.421010 eV Core-core repulsion = 15959.472078 eV Total energy + Delta-G solvation = -2765.948931 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.69103 -38.53972 -36.26636 -34.85488 -33.37840 -31.79410 -29.74287 -28.64837 -26.90455 -24.74690 -24.24788 -23.27104 -21.84738 -20.67896 -18.63833 -17.52597 -17.26513 -16.76739 -16.59096 -16.19916 -15.94407 -15.40222 -15.21492 -15.04331 -14.36866 -13.83323 -13.61781 -13.51428 -13.38372 -13.21435 -12.89003 -12.78456 -12.75403 -12.59950 -12.22866 -12.16113 -11.99826 -11.72533 -11.62960 -11.29182 -11.12290 -10.85468 -10.22312 -9.50213 -9.11540 -8.34936 -6.47048 1.36899 1.41344 1.49523 2.31341 2.93299 2.99171 3.23706 3.65184 3.77765 3.93216 4.11141 4.13137 4.24178 4.30739 4.44307 4.52171 4.59703 4.62823 4.71153 4.78964 4.80069 4.89577 4.95431 4.97753 5.05225 5.12001 5.16109 5.25112 5.32103 5.41589 5.51880 5.58812 5.92828 6.12861 6.19954 6.29863 6.49243 6.70751 6.77297 7.24723 8.77263 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.022475 B = 0.007010 C = 0.005894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.515025 B = 3993.441389 C = 4749.627333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.072 4.072 3 H 0.079 0.921 4 C 0.060 3.940 5 N -0.529 5.529 6 C 0.065 3.935 7 C 0.015 3.985 8 O -0.389 6.389 9 C 0.210 3.790 10 C -0.542 4.542 11 H 0.062 0.938 12 C 0.008 3.992 13 N -0.932 5.932 14 Si 0.977 3.023 15 H -0.264 1.264 16 H -0.275 1.275 17 H -0.266 1.266 18 C 0.050 3.950 19 C -0.136 4.136 20 C 0.098 3.902 21 H 0.049 0.951 22 N -0.841 5.841 23 H 0.074 0.926 24 H 0.047 0.953 25 H 0.028 0.972 26 H 0.056 0.944 27 H 0.042 0.958 28 H 0.115 0.885 29 H 0.079 0.921 30 H 0.044 0.956 31 H 0.034 0.966 32 H -0.019 1.019 33 H -0.023 1.023 34 H 0.270 0.730 35 H 0.012 0.988 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.348 0.652 40 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.287 11.921 9.102 17.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.091 4.091 3 H 0.097 0.903 4 C -0.068 4.068 5 N -0.252 5.252 6 C -0.063 4.063 7 C -0.063 4.063 8 O -0.309 6.309 9 C 0.135 3.865 10 C -0.580 4.580 11 H 0.080 0.920 12 C -0.191 4.191 13 N -0.571 5.571 14 Si 0.800 3.200 15 H -0.189 1.189 16 H -0.200 1.200 17 H -0.190 1.190 18 C -0.078 4.078 19 C -0.176 4.176 20 C -0.014 4.014 21 H 0.067 0.933 22 N -0.371 5.371 23 H 0.093 0.907 24 H 0.066 0.934 25 H 0.047 0.953 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.133 0.867 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.052 0.948 32 H -0.001 1.001 33 H -0.005 1.005 34 H 0.079 0.921 35 H 0.030 0.970 36 H 0.109 0.891 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.161 0.839 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.559 12.233 8.890 16.906 hybrid contribution 0.098 -1.659 -0.334 1.695 sum 7.656 10.574 8.556 15.609 Atomic orbital electron populations 1.21615 0.95034 1.00638 1.01692 1.21103 0.95480 0.99449 0.93075 0.90277 1.22259 0.87040 1.00158 0.97356 1.62252 1.08415 1.52324 1.02167 1.22349 1.00366 0.90697 0.92889 1.23338 0.83197 1.00568 0.99222 1.87995 1.19422 1.30801 1.92679 1.19746 0.93011 0.81150 0.92590 1.21305 0.92012 0.94043 1.50610 0.91967 1.25927 1.04782 0.94225 0.94148 1.70059 1.38119 0.98970 1.49947 0.85316 0.77457 0.77814 0.79396 1.18878 1.19976 1.19050 1.22132 1.00382 0.94544 0.90758 1.22344 0.96589 1.01914 0.96724 1.21361 0.92720 0.96738 0.90570 0.93312 1.58801 1.67809 1.06843 1.03640 0.90680 0.93396 0.95298 0.92553 0.93985 0.86703 0.90217 0.93734 0.94782 1.00100 1.00510 0.92089 0.96963 0.89086 0.90353 0.90197 0.83894 0.83919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.04 9.07 71.98 0.65 -3.39 16 2 C -0.07 -2.07 2.51 -10.74 -0.03 -2.09 16 3 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 4 C 0.06 2.09 3.51 86.33 0.30 2.39 16 5 N -0.53 -15.52 4.86 -896.36 -4.35 -19.87 16 6 C 0.07 1.89 5.93 86.30 0.51 2.40 16 7 C 0.02 0.57 5.75 71.98 0.41 0.98 16 8 O -0.39 -18.70 6.77 -148.98 -1.01 -19.71 16 9 C 0.21 11.94 5.69 71.24 0.41 12.35 16 10 C -0.54 -32.49 9.43 25.60 0.24 -32.24 16 11 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 12 C 0.01 0.45 5.46 84.66 0.46 0.91 16 13 N -0.93 -56.81 13.28 21.45 0.28 -56.52 16 14 Si 0.98 44.99 29.54 68.60 2.03 47.02 16 15 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 16 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 17 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 18 C 0.05 1.31 5.06 86.33 0.44 1.75 16 19 C -0.14 -2.93 5.67 30.65 0.17 -2.76 16 20 C 0.10 2.51 2.74 45.00 0.12 2.63 16 21 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 22 N -0.84 -16.96 8.61 -168.35 -1.45 -18.41 16 23 H 0.07 2.05 7.68 -2.38 -0.02 2.03 16 24 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.06 2.11 8.12 -2.39 -0.02 2.09 16 27 H 0.04 1.84 5.58 -2.39 -0.01 1.83 16 28 H 0.11 2.53 8.06 -2.39 -0.02 2.51 16 29 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.03 1.28 6.46 -2.39 -0.02 1.27 16 32 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 33 H -0.02 -1.38 8.14 -2.39 -0.02 -1.40 16 34 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 35 H 0.01 0.38 6.65 -2.39 -0.02 0.37 16 36 H 0.09 1.94 8.06 -2.39 -0.02 1.92 16 37 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.35 5.78 9.04 -89.70 -0.81 4.97 16 40 H 0.35 5.80 8.98 -89.69 -0.81 5.00 16 Total: -1.00 -66.11 311.37 -1.41 -67.52 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -0.60 Total: 17.05 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: 3.70 Total: -17.07 kcal Atomic # 7 Polarization: -89.28 SS G_CDS: -5.52 Total: -94.80 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -1.01 Total: -19.71 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -66.11 -1.41 -67.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385182560.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.264 kcal (2) G-P(sol) polarization free energy of solvation -66.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds